Wall clock time and date at job start Mon Mar 30 2020 02:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.69802 * 2 1 4 4 C 1.53629 * 109.66156 * 120.58905 * 2 1 3 5 5 H 1.08991 * 109.66098 * 54.54416 * 4 2 1 6 6 N 1.46894 * 109.43314 * 294.41778 * 4 2 1 7 7 C 1.53042 * 109.23893 * 174.54903 * 4 2 1 8 8 C 1.53042 * 109.53866 * 298.51488 * 7 4 2 9 9 C 1.53187 * 109.31465 * 61.36407 * 8 7 4 10 10 N 1.46921 * 108.77705 * 305.36760 * 9 8 7 11 11 C 1.36938 * 120.62964 * 233.59104 * 10 9 8 12 12 H 1.08001 * 120.00408 * 150.44049 * 11 10 9 13 13 C 1.38809 * 119.99825 * 330.43014 * 11 10 9 14 14 N 1.31624 * 120.00279 * 344.31554 * 13 11 10 15 15 Si 1.86799 * 119.99872 * 164.03486 * 13 11 10 16 16 H 1.48508 * 109.47457 * 266.60329 * 15 13 11 17 17 H 1.48501 * 109.47469 * 26.60164 * 15 13 11 18 18 H 1.48498 * 109.47233 * 146.60409 * 15 13 11 19 19 H 1.09004 * 109.46767 * 180.35656 * 1 2 3 20 20 H 1.09003 * 109.46722 * 300.35809 * 1 2 3 21 21 H 1.08999 * 109.46738 * 60.35675 * 1 2 3 22 22 H 1.00901 * 111.00161 * 180.29305 * 6 4 2 23 23 H 1.00903 * 111.00091 * 304.24019 * 6 4 2 24 24 H 1.08995 * 109.46177 * 178.48760 * 7 4 2 25 25 H 1.09008 * 109.45214 * 58.52576 * 7 4 2 26 26 H 1.09005 * 109.49516 * 301.41082 * 8 7 4 27 27 H 1.09004 * 109.52056 * 181.33365 * 8 7 4 28 28 H 1.09007 * 109.58544 * 185.57972 * 9 8 7 29 29 H 1.08998 * 109.70538 * 65.22645 * 9 8 7 30 30 H 0.96998 * 119.99987 * 179.72183 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0470 -0.7362 1.2454 5 1 1.6097 -1.7336 1.2897 6 7 1.6721 0.0174 2.4493 7 6 3.5712 -0.8497 1.1677 8 6 3.9615 -1.6627 -0.0688 9 6 3.4657 -0.9420 -1.3263 10 7 2.0227 -0.6995 -1.1944 11 6 1.1538 -1.1128 -2.1689 12 1 0.1397 -1.3797 -1.9105 13 6 1.5765 -1.1885 -3.4889 14 7 2.6855 -0.5847 -3.8605 15 14 0.5756 -2.1537 -4.7362 16 1 1.0994 -3.5405 -4.8248 17 1 -0.8465 -2.1881 -4.3098 18 1 0.6780 -1.5001 -6.0656 19 1 -0.3633 -1.0277 0.0064 20 1 -0.3633 0.5194 0.8868 21 1 -0.3633 0.5083 -0.8932 22 1 2.0049 -0.4438 3.2828 23 1 2.0108 0.9667 2.4018 24 1 3.9443 -1.3478 2.0625 25 1 4.0064 0.1473 1.0990 26 1 3.5062 -2.6515 -0.0127 27 1 5.0461 -1.7635 -0.1109 28 1 3.6533 -1.5638 -2.2017 29 1 3.9876 0.0088 -1.4348 30 1 2.9829 -0.6410 -4.7821 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307044593.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:44 Heat of formation + Delta-G solvation = -10.618787 kcal Electronic energy + Delta-G solvation = -11985.059121 eV Core-core repulsion = 10007.360969 eV Total energy + Delta-G solvation = -1977.698153 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.75169 -35.75956 -33.80674 -33.10146 -29.92770 -27.40272 -26.63535 -23.29108 -22.16942 -20.87300 -18.31209 -17.17594 -16.62196 -15.85300 -15.45102 -15.11731 -14.83422 -14.31599 -14.19218 -13.26524 -13.16786 -12.80634 -12.62289 -12.42460 -12.29646 -11.96432 -11.79327 -11.68526 -11.57013 -11.01673 -10.52565 -9.45428 -8.62885 -7.84836 -5.31363 1.46421 1.47470 1.56716 2.51694 3.29674 3.53279 3.91288 4.00648 4.11079 4.30311 4.41655 4.66210 4.75675 4.84326 4.92658 5.05803 5.07404 5.18205 5.30760 5.44106 5.51062 5.58684 5.71855 5.76448 6.29716 6.45414 6.74343 7.17945 7.89889 8.41795 9.22014 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.053823 B = 0.014441 C = 0.012372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.094682 B = 1938.520756 C = 2262.603753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.170 3.830 3 H 0.009 0.991 4 C 0.091 3.909 5 H 0.065 0.935 6 N -0.837 5.837 7 C -0.135 4.135 8 C -0.130 4.130 9 C 0.174 3.826 10 N -0.605 5.605 11 C -0.252 4.252 12 H 0.072 0.928 13 C -0.054 4.054 14 N -0.939 5.939 15 Si 0.964 3.036 16 H -0.287 1.287 17 H -0.267 1.267 18 H -0.296 1.296 19 H 0.042 0.958 20 H 0.074 0.926 21 H 0.033 0.967 22 H 0.349 0.651 23 H 0.342 0.658 24 H 0.075 0.925 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.067 0.933 28 H 0.051 0.949 29 H -0.008 1.008 30 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.293 -0.801 10.058 10.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.064 3.936 3 H 0.026 0.974 4 C -0.022 4.022 5 H 0.083 0.917 6 N -0.366 5.366 7 C -0.174 4.174 8 C -0.170 4.170 9 C 0.049 3.951 10 N -0.329 5.329 11 C -0.382 4.382 12 H 0.090 0.910 13 C -0.249 4.249 14 N -0.586 5.586 15 Si 0.792 3.208 16 H -0.214 1.214 17 H -0.192 1.192 18 H -0.223 1.223 19 H 0.061 0.939 20 H 0.093 0.907 21 H 0.052 0.948 22 H 0.162 0.838 23 H 0.155 0.845 24 H 0.094 0.906 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.085 0.915 28 H 0.069 0.931 29 H 0.010 0.990 30 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -0.441 -0.922 9.698 9.752 hybrid contribution 0.891 -0.205 -1.054 1.396 sum 0.450 -1.127 8.644 8.729 Atomic orbital electron populations 1.21590 0.94739 1.00754 1.00338 1.20639 0.94233 0.92409 0.86334 0.97384 1.21797 0.92820 0.97210 0.90402 0.91699 1.58831 1.67734 1.06454 1.03624 1.22207 0.97456 0.99855 0.97917 1.21985 0.99921 0.98998 0.96046 1.20597 0.83392 0.95641 0.95503 1.44405 1.02975 1.65913 1.19613 1.19523 0.95608 1.36333 0.86759 0.91020 1.25843 0.99295 1.00980 0.98793 1.70194 1.26067 1.45627 1.16670 0.85298 0.78972 0.78198 0.78300 1.21353 1.19175 1.22299 0.93871 0.90707 0.94833 0.83781 0.84542 0.90638 0.92966 0.93066 0.91473 0.93101 0.98981 0.94316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.66 7.84 71.98 0.56 -4.10 16 2 C 0.17 7.22 3.12 45.12 0.14 7.36 16 3 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 4 C 0.09 3.08 2.81 45.14 0.13 3.21 16 5 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 6 N -0.84 -21.99 8.78 -167.76 -1.47 -23.46 16 7 C -0.13 -4.30 5.45 30.62 0.17 -4.13 16 8 C -0.13 -4.94 6.08 30.67 0.19 -4.75 16 9 C 0.17 8.65 5.28 86.36 0.46 9.11 16 10 N -0.60 -30.97 2.98 -674.43 -2.01 -32.98 16 11 C -0.25 -14.02 8.57 84.03 0.72 -13.30 16 12 H 0.07 3.89 6.24 -2.91 -0.02 3.88 16 13 C -0.05 -3.09 4.94 84.86 0.42 -2.67 16 14 N -0.94 -56.79 11.22 21.65 0.24 -56.55 16 15 Si 0.96 45.76 29.58 68.60 2.03 47.79 16 16 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 17 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 18 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 19 H 0.04 1.74 7.44 -2.38 -0.02 1.72 16 20 H 0.07 2.56 7.82 -2.39 -0.02 2.54 16 21 H 0.03 1.44 7.63 -2.39 -0.02 1.42 16 22 H 0.35 7.33 9.04 -89.69 -0.81 6.52 16 23 H 0.34 8.36 8.98 -89.69 -0.81 7.55 16 24 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 25 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 26 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 27 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 28 H 0.05 2.85 6.13 -2.38 -0.01 2.84 16 29 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 30 H 0.25 14.53 8.31 -92.71 -0.77 13.75 16 Total: -1.00 -62.75 236.56 1.08 -61.67 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -0.49 Total: 12.80 kcal Atomic # 6 Polarization: -12.05 SS G_CDS: 2.78 Total: -9.27 kcal Atomic # 7 Polarization: -109.75 SS G_CDS: -3.24 Total: -112.99 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Total: -62.75 1.08 -61.67 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307044593.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.053 kcal (2) G-P(sol) polarization free energy of solvation -62.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds