Wall clock time and date at job start Mon Mar 30 2020 02:33:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08991 * 109.43126 * 2 1 4 4 C 1.47547 * 109.42593 * 119.84357 * 2 1 3 5 5 N 1.46266 * 114.37233 * 182.29714 * 4 2 1 6 6 C 1.44757 * 110.64296 * 272.24800 * 5 4 2 7 7 C 1.54410 * 109.82601 * 94.06496 * 6 5 4 8 8 N 1.47778 * 111.34566 * 320.28823 * 7 6 5 9 9 C 1.36934 * 118.54790 * 137.99194 * 8 7 6 10 10 H 1.07997 * 119.99875 * 207.27798 * 9 8 7 11 11 C 1.38814 * 120.00147 * 27.27605 * 9 8 7 12 12 N 1.31620 * 119.99693 * 27.37057 * 11 9 8 13 13 Si 1.86794 * 119.99985 * 207.09590 * 11 9 8 14 14 H 1.48501 * 109.47455 * 90.00132 * 13 11 9 15 15 H 1.48511 * 109.47099 * 210.00167 * 13 11 9 16 16 H 1.48502 * 109.47367 * 329.99607 * 13 11 9 17 17 C 1.44673 * 122.90311 * 317.71172 * 8 7 6 18 18 H 1.09005 * 109.47026 * 179.88866 * 1 2 3 19 19 H 1.08999 * 109.47216 * 299.89369 * 1 2 3 20 20 H 1.09001 * 109.47104 * 59.88973 * 1 2 3 21 21 H 1.09006 * 108.49625 * 303.55835 * 4 2 1 22 22 H 1.08994 * 108.50625 * 61.18647 * 4 2 1 23 23 H 1.00900 * 111.00254 * 35.95149 * 5 4 2 24 24 H 1.08995 * 109.43889 * 214.22764 * 6 5 4 25 25 H 1.09002 * 109.43960 * 334.10181 * 6 5 4 26 26 H 1.08998 * 109.26616 * 199.75120 * 7 6 5 27 27 H 1.09002 * 109.07106 * 80.69530 * 7 6 5 28 28 H 0.97002 * 120.00049 * 4.81315 * 12 11 9 29 29 H 1.09003 * 109.46112 * 209.37780 * 17 8 7 30 30 H 1.08999 * 109.46803 * 329.34691 * 17 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8926 1.0278 0.0000 4 6 2.0207 -0.6924 1.2069 5 7 3.4769 -0.7091 1.3432 6 6 4.0407 -1.8519 0.6566 7 6 4.4614 -1.4486 -0.7733 8 7 3.4743 -0.5362 -1.3872 9 6 3.9323 0.5352 -2.1065 10 1 3.3291 1.4272 -2.1899 11 6 5.1718 0.4750 -2.7284 12 7 5.6645 -0.6868 -3.1027 13 14 6.1372 2.0433 -3.0409 14 1 7.0129 2.3262 -1.8754 15 1 6.9716 1.8767 -4.2581 16 1 5.1947 3.1738 -3.2379 17 6 2.0454 -0.7283 -1.2669 18 1 -0.3633 -1.0277 -0.0020 19 1 -0.3633 0.5122 0.8909 20 1 -0.3633 0.5155 -0.8890 21 1 1.5968 -0.2021 2.0834 22 1 1.6660 -1.7228 1.1830 23 1 3.8816 0.1514 1.0057 24 1 4.9127 -2.2100 1.2039 25 1 3.2961 -2.6461 0.6022 26 1 4.5492 -2.3442 -1.3884 27 1 5.4298 -0.9500 -0.7324 28 1 5.1326 -1.4924 -3.0078 29 1 1.5487 -0.3207 -2.1475 30 1 1.8274 -1.7933 -1.1875 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307330230.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:27 Heat of formation + Delta-G solvation = 13.386595 kcal Electronic energy + Delta-G solvation = -12053.243746 eV Core-core repulsion = 10076.586545 eV Total energy + Delta-G solvation = -1976.657201 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.49264 -34.46246 -33.32884 -30.75845 -27.84982 -25.26775 -24.50484 -22.73661 -20.45546 -19.29781 -17.29430 -15.57508 -14.90822 -14.44847 -13.86865 -13.63051 -13.06704 -12.59014 -12.31404 -12.26683 -11.63852 -11.37444 -11.10362 -10.75357 -10.67520 -10.29884 -10.11285 -10.04130 -9.94904 -9.36397 -8.30638 -7.76428 -6.91510 -6.09377 -3.27640 3.50202 3.51123 3.67989 4.57433 4.97911 5.21653 5.34892 5.45801 5.49440 5.72533 5.82767 5.96297 6.09039 6.20567 6.23622 6.28413 6.43938 6.46361 6.62273 6.77018 6.83540 6.97242 7.09702 7.75228 8.03242 8.07533 8.56381 9.14037 9.83733 10.21134 11.16863 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.047386 B = 0.014688 C = 0.013165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.749257 B = 1905.816353 C = 2126.366432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.153 4.153 3 H 0.070 0.930 4 C 0.073 3.927 5 N -0.676 5.676 6 C 0.038 3.962 7 C 0.122 3.878 8 N -0.599 5.599 9 C -0.364 4.364 10 H 0.056 0.944 11 C -0.019 4.019 12 N -0.911 5.911 13 Si 1.065 2.935 14 H -0.292 1.292 15 H -0.290 1.290 16 H -0.292 1.292 17 C 0.164 3.836 18 H 0.047 0.953 19 H 0.046 0.954 20 H 0.051 0.949 21 H 0.052 0.948 22 H 0.050 0.950 23 H 0.351 0.649 24 H 0.065 0.935 25 H 0.050 0.950 26 H 0.020 0.980 27 H 0.071 0.929 28 H 0.269 0.731 29 H 0.048 0.952 30 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.046 -0.069 6.000 8.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.176 4.176 3 H 0.088 0.912 4 C -0.057 4.057 5 N -0.305 5.305 6 C -0.094 4.094 7 C -0.004 4.004 8 N -0.321 5.321 9 C -0.493 4.493 10 H 0.073 0.927 11 C -0.222 4.222 12 N -0.550 5.550 13 Si 0.895 3.105 14 H -0.219 1.219 15 H -0.217 1.217 16 H -0.219 1.219 17 C 0.036 3.964 18 H 0.066 0.934 19 H 0.066 0.934 20 H 0.070 0.930 21 H 0.071 0.929 22 H 0.069 0.931 23 H 0.170 0.830 24 H 0.083 0.917 25 H 0.068 0.932 26 H 0.038 0.962 27 H 0.089 0.911 28 H 0.080 0.920 29 H 0.066 0.934 30 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -4.592 0.191 6.030 7.582 hybrid contribution -1.627 -0.321 -0.434 1.714 sum -6.219 -0.130 5.596 8.367 Atomic orbital electron populations 1.21680 0.95964 1.00902 1.00925 1.21872 0.94876 1.01766 0.99093 0.91183 1.20830 0.89051 0.99578 0.96243 1.60530 1.04289 1.07142 1.58552 1.22506 0.99023 0.93284 0.94575 1.22005 0.94018 0.93612 0.90795 1.43827 0.99349 1.30548 1.58414 1.19990 1.05982 0.93083 1.30265 0.92660 1.25838 0.97784 1.03354 0.95195 1.70771 1.42342 0.99879 1.42055 0.83526 0.75884 0.74684 0.76456 1.21925 1.21663 1.21870 1.20780 0.85471 0.95765 0.94402 0.93361 0.93448 0.93024 0.92937 0.93125 0.82993 0.91655 0.93158 0.96214 0.91091 0.91960 0.93405 0.95576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.14 37.16 0.34 -1.65 16 2 C -0.15 -2.77 2.69 -92.22 -0.25 -3.01 16 3 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 4 C 0.07 1.27 5.04 -6.80 -0.03 1.23 16 5 N -0.68 -12.90 6.78 -117.96 -0.80 -13.70 16 6 C 0.04 0.73 6.40 -4.23 -0.03 0.71 16 7 C 0.12 2.87 4.62 -2.60 -0.01 2.86 16 8 N -0.60 -14.79 2.15 -171.53 -0.37 -15.16 16 9 C -0.36 -10.06 9.28 -15.06 -0.14 -10.20 16 10 H 0.06 1.56 7.96 -52.49 -0.42 1.14 16 11 C -0.02 -0.53 4.52 -17.43 -0.08 -0.61 16 12 N -0.91 -27.26 12.61 55.49 0.70 -26.56 16 13 Si 1.06 25.29 30.00 -169.99 -5.10 20.19 16 14 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 15 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 16 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 17 C 0.16 3.49 5.01 -3.99 -0.02 3.47 16 18 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 19 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 20 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 21 H 0.05 0.84 8.12 -51.93 -0.42 0.42 16 22 H 0.05 0.86 7.17 -51.93 -0.37 0.48 16 23 H 0.35 7.34 7.86 -39.29 -0.31 7.03 16 24 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 25 H 0.05 0.93 7.13 -51.93 -0.37 0.56 16 26 H 0.02 0.49 7.19 -51.93 -0.37 0.12 16 27 H 0.07 1.85 6.75 -51.93 -0.35 1.50 16 28 H 0.27 8.14 6.45 -40.82 -0.26 7.88 16 29 H 0.05 1.06 7.96 -51.93 -0.41 0.65 16 30 H 0.03 0.54 8.09 -51.93 -0.42 0.12 16 LS Contribution 234.94 15.07 3.54 3.54 Total: -1.00 -28.81 234.94 -6.87 -35.68 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -4.62 Total: 3.20 kcal Atomic # 6 Polarization: -6.98 SS G_CDS: -0.22 Total: -7.20 kcal Atomic # 7 Polarization: -54.95 SS G_CDS: -0.47 Total: -55.42 kcal Atomic # 14 Polarization: 25.29 SS G_CDS: -5.10 Total: 20.19 kcal Total LS contribution 3.54 Total: 3.54 kcal Total: -28.81 -6.87 -35.68 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307330230.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.066 kcal (2) G-P(sol) polarization free energy of solvation -28.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds