Wall clock time and date at job start Mon Mar 30 2020 02:33:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08991 * 109.43126 * 2 1 4 4 C 1.47547 * 109.42593 * 119.84357 * 2 1 3 5 5 N 1.46266 * 114.37233 * 182.29714 * 4 2 1 6 6 C 1.44757 * 110.64296 * 272.24800 * 5 4 2 7 7 C 1.54410 * 109.82601 * 94.06496 * 6 5 4 8 8 N 1.47778 * 111.34566 * 320.28823 * 7 6 5 9 9 C 1.36934 * 118.54790 * 137.99194 * 8 7 6 10 10 H 1.07997 * 119.99875 * 207.27798 * 9 8 7 11 11 C 1.38814 * 120.00147 * 27.27605 * 9 8 7 12 12 N 1.31620 * 119.99693 * 27.37057 * 11 9 8 13 13 Si 1.86794 * 119.99985 * 207.09590 * 11 9 8 14 14 H 1.48501 * 109.47455 * 90.00132 * 13 11 9 15 15 H 1.48511 * 109.47099 * 210.00167 * 13 11 9 16 16 H 1.48502 * 109.47367 * 329.99607 * 13 11 9 17 17 C 1.44673 * 122.90311 * 317.71172 * 8 7 6 18 18 H 1.09005 * 109.47026 * 179.88866 * 1 2 3 19 19 H 1.08999 * 109.47216 * 299.89369 * 1 2 3 20 20 H 1.09001 * 109.47104 * 59.88973 * 1 2 3 21 21 H 1.09006 * 108.49625 * 303.55835 * 4 2 1 22 22 H 1.08994 * 108.50625 * 61.18647 * 4 2 1 23 23 H 1.00900 * 111.00254 * 35.95149 * 5 4 2 24 24 H 1.08995 * 109.43889 * 214.22764 * 6 5 4 25 25 H 1.09002 * 109.43960 * 334.10181 * 6 5 4 26 26 H 1.08998 * 109.26616 * 199.75120 * 7 6 5 27 27 H 1.09002 * 109.07106 * 80.69530 * 7 6 5 28 28 H 0.97002 * 120.00049 * 4.81315 * 12 11 9 29 29 H 1.09003 * 109.46112 * 209.37780 * 17 8 7 30 30 H 1.08999 * 109.46803 * 329.34691 * 17 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8926 1.0278 0.0000 4 6 2.0207 -0.6924 1.2069 5 7 3.4769 -0.7091 1.3432 6 6 4.0407 -1.8519 0.6566 7 6 4.4614 -1.4486 -0.7733 8 7 3.4743 -0.5362 -1.3872 9 6 3.9323 0.5352 -2.1065 10 1 3.3291 1.4272 -2.1899 11 6 5.1718 0.4750 -2.7284 12 7 5.6645 -0.6868 -3.1027 13 14 6.1372 2.0433 -3.0409 14 1 7.0129 2.3262 -1.8754 15 1 6.9716 1.8767 -4.2581 16 1 5.1947 3.1738 -3.2379 17 6 2.0454 -0.7283 -1.2669 18 1 -0.3633 -1.0277 -0.0020 19 1 -0.3633 0.5122 0.8909 20 1 -0.3633 0.5155 -0.8890 21 1 1.5968 -0.2021 2.0834 22 1 1.6660 -1.7228 1.1830 23 1 3.8816 0.1514 1.0057 24 1 4.9127 -2.2100 1.2039 25 1 3.2961 -2.6461 0.6022 26 1 4.5492 -2.3442 -1.3884 27 1 5.4298 -0.9500 -0.7324 28 1 5.1326 -1.4924 -3.0078 29 1 1.5487 -0.3207 -2.1475 30 1 1.8274 -1.7933 -1.1875 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307330230.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:27 Heat of formation + Delta-G solvation = -6.169890 kcal Electronic energy + Delta-G solvation = -12054.091779 eV Core-core repulsion = 10076.586545 eV Total energy + Delta-G solvation = -1977.505234 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.13565 -36.33322 -34.86498 -32.77023 -29.45491 -27.12805 -26.09314 -24.50363 -22.04523 -21.03680 -19.33028 -17.20902 -16.47662 -16.26428 -15.67133 -15.46522 -14.66362 -14.29410 -13.95501 -13.83272 -13.19701 -12.90835 -12.74524 -12.46433 -12.30262 -12.06062 -11.91550 -11.78678 -11.55987 -11.28341 -10.41344 -9.32536 -8.96816 -8.27434 -5.45603 1.56633 1.63083 1.80704 2.62332 3.12217 3.41435 3.64646 3.85044 4.04531 4.14633 4.40020 4.47868 4.61233 4.65239 4.75034 4.84762 4.91415 4.97908 5.12115 5.15954 5.21670 5.33669 5.45455 5.84194 6.24060 6.34262 6.44360 7.07040 7.76477 8.12767 8.94268 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.047386 B = 0.014688 C = 0.013165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.749257 B = 1905.816353 C = 2126.366432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.139 4.139 3 H 0.047 0.953 4 C 0.070 3.930 5 N -0.673 5.673 6 C 0.052 3.948 7 C 0.132 3.868 8 N -0.612 5.612 9 C -0.364 4.364 10 H 0.046 0.954 11 C -0.069 4.069 12 N -0.938 5.938 13 Si 1.114 2.886 14 H -0.282 1.282 15 H -0.295 1.295 16 H -0.275 1.275 17 C 0.158 3.842 18 H 0.062 0.938 19 H 0.069 0.931 20 H 0.049 0.951 21 H 0.075 0.925 22 H 0.062 0.938 23 H 0.339 0.661 24 H 0.081 0.919 25 H 0.065 0.935 26 H -0.001 1.001 27 H 0.037 0.963 28 H 0.254 0.746 29 H 0.031 0.969 30 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.154 0.361 7.382 10.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.162 4.162 3 H 0.065 0.935 4 C -0.059 4.059 5 N -0.301 5.301 6 C -0.080 4.080 7 C 0.005 3.995 8 N -0.336 5.336 9 C -0.494 4.494 10 H 0.064 0.936 11 C -0.266 4.266 12 N -0.580 5.580 13 Si 0.939 3.061 14 H -0.208 1.208 15 H -0.222 1.222 16 H -0.200 1.200 17 C 0.032 3.968 18 H 0.081 0.919 19 H 0.088 0.912 20 H 0.068 0.932 21 H 0.093 0.907 22 H 0.080 0.920 23 H 0.157 0.843 24 H 0.099 0.901 25 H 0.083 0.917 26 H 0.017 0.983 27 H 0.056 0.944 28 H 0.064 0.936 29 H 0.050 0.950 30 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -5.748 0.615 7.441 9.422 hybrid contribution -1.359 -0.487 -0.867 1.684 sum -7.107 0.128 6.574 9.682 Atomic orbital electron populations 1.21625 0.92895 1.02213 1.02027 1.21671 0.97334 0.99772 0.97384 0.93454 1.20936 0.87952 1.00434 0.96578 1.60603 1.05413 1.06279 1.57811 1.22407 1.00115 0.93783 0.91684 1.21871 0.92536 0.91990 0.93071 1.44012 1.00883 1.30129 1.58555 1.20160 1.05976 0.93536 1.29737 0.93572 1.27135 0.99119 1.05189 0.95184 1.70897 1.42437 1.00068 1.44568 0.82863 0.75022 0.71933 0.76302 1.20824 1.22184 1.19998 1.20958 0.83593 0.96637 0.95631 0.91938 0.91199 0.93161 0.90683 0.91959 0.84276 0.90125 0.91662 0.98296 0.94405 0.93592 0.95019 0.94743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.35 9.14 71.98 0.66 -2.70 16 2 C -0.14 -4.73 2.69 -11.83 -0.03 -4.76 16 3 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 4 C 0.07 2.23 5.04 84.72 0.43 2.65 16 5 N -0.67 -24.29 6.78 -527.10 -3.57 -27.86 16 6 C 0.05 1.93 6.40 87.18 0.56 2.49 16 7 C 0.13 6.27 4.62 86.61 0.40 6.67 16 8 N -0.61 -30.48 2.15 -696.61 -1.50 -31.98 16 9 C -0.36 -20.37 9.28 84.03 0.78 -19.59 16 10 H 0.05 2.63 7.96 -2.91 -0.02 2.60 16 11 C -0.07 -3.94 4.52 84.86 0.38 -3.55 16 12 N -0.94 -57.53 12.61 21.65 0.27 -57.26 16 13 Si 1.11 51.36 30.00 68.60 2.06 53.41 16 14 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 15 H -0.30 -13.78 7.11 99.48 0.71 -13.08 16 16 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 17 C 0.16 6.64 5.01 87.39 0.44 7.08 16 18 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 19 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 20 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 21 H 0.07 2.10 8.12 -2.38 -0.02 2.08 16 22 H 0.06 1.86 7.17 -2.39 -0.02 1.84 16 23 H 0.34 13.82 7.86 -89.69 -0.71 13.11 16 24 H 0.08 2.77 8.14 -2.39 -0.02 2.76 16 25 H 0.06 2.25 7.13 -2.39 -0.02 2.23 16 26 H 0.00 -0.04 7.19 -2.39 -0.02 -0.06 16 27 H 0.04 2.02 6.75 -2.39 -0.02 2.00 16 28 H 0.25 15.93 6.45 -92.71 -0.60 15.33 16 29 H 0.03 1.40 7.96 -2.39 -0.02 1.38 16 30 H 0.03 1.38 8.09 -2.39 -0.02 1.36 16 Total: -1.00 -61.99 234.94 1.45 -60.54 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: 0.57 Total: 14.86 kcal Atomic # 6 Polarization: -15.33 SS G_CDS: 3.61 Total: -11.72 kcal Atomic # 7 Polarization: -112.30 SS G_CDS: -4.80 Total: -117.10 kcal Atomic # 14 Polarization: 51.36 SS G_CDS: 2.06 Total: 53.41 kcal Total: -61.99 1.45 -60.54 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307330230.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.372 kcal (2) G-P(sol) polarization free energy of solvation -61.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds