Wall clock time and date at job start Mon Mar 30 2020 02:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.51269 * 2 1 4 4 C 1.53235 * 109.49185 * 239.93190 * 2 1 3 5 5 N 1.47079 * 108.52078 * 293.86784 * 4 2 1 6 6 C 1.36939 * 120.88157 * 128.84198 * 5 4 2 7 7 H 1.08004 * 119.99670 * 333.66720 * 6 5 4 8 8 C 1.38806 * 120.00437 * 153.67124 * 6 5 4 9 9 N 1.31616 * 120.00290 * 159.61583 * 8 6 5 10 10 Si 1.86804 * 119.99870 * 339.62424 * 8 6 5 11 11 H 1.48500 * 109.47134 * 94.33134 * 10 8 6 12 12 H 1.48495 * 109.46843 * 214.33437 * 10 8 6 13 13 H 1.48500 * 109.46835 * 334.32902 * 10 8 6 14 14 C 1.47076 * 118.23990 * 308.81620 * 5 4 2 15 15 C 1.53246 * 108.52119 * 51.18562 * 14 5 4 16 16 N 1.46903 * 109.33789 * 306.16902 * 15 14 5 17 17 H 1.09003 * 109.46734 * 299.93236 * 1 2 3 18 18 H 1.09004 * 109.47089 * 59.93541 * 1 2 3 19 19 H 1.08995 * 109.47049 * 179.97438 * 1 2 3 20 20 H 1.08997 * 109.47156 * 180.02562 * 3 2 1 21 21 H 1.09003 * 109.46840 * 300.06217 * 3 2 1 22 22 H 1.08993 * 109.47495 * 60.06829 * 3 2 1 23 23 H 1.08995 * 109.63184 * 53.58271 * 4 2 1 24 24 H 1.09005 * 109.62861 * 173.96601 * 4 2 1 25 25 H 0.97004 * 120.00530 * 180.02562 * 9 8 6 26 26 H 1.09004 * 109.63141 * 291.48001 * 14 5 4 27 27 H 1.09000 * 109.62867 * 170.89460 * 14 5 4 28 28 H 1.08990 * 109.49263 * 66.12927 * 15 14 5 29 29 H 1.08994 * 109.49200 * 186.19039 * 15 14 5 30 30 H 1.00894 * 111.00068 * 187.25153 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0411 1.4421 0.0000 4 6 2.0414 -0.7238 -1.2501 5 7 1.6653 -2.1425 -1.1553 6 6 1.0190 -2.7688 -2.1873 7 1 0.4115 -2.1950 -2.8716 8 6 1.1444 -4.1411 -2.3541 9 7 0.2494 -4.8034 -3.0560 10 14 2.5835 -5.0481 -1.5819 11 1 2.1761 -5.5889 -0.2603 12 1 2.9970 -6.1656 -2.4680 13 1 3.7213 -4.1106 -1.4039 14 6 2.0023 -2.8708 0.0772 15 6 1.4924 -2.0625 1.2752 16 7 2.0202 -0.6937 1.1986 17 1 -0.3633 0.5128 0.8906 18 1 -0.3633 0.5149 -0.8894 19 1 -0.3633 -1.0276 -0.0005 20 1 3.1311 1.4414 -0.0005 21 1 1.6772 1.9565 -0.8895 22 1 1.6792 1.9559 0.8905 23 1 1.5890 -0.2837 -2.1388 24 1 3.1260 -0.6326 -1.3081 25 1 0.3369 -5.7624 -3.1722 26 1 3.0835 -2.9889 0.1488 27 1 1.5240 -3.8502 0.0662 28 1 0.4031 -2.0338 1.2575 29 1 1.8290 -2.5312 2.1999 30 1 1.7981 -0.1732 2.0338 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307552569.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:53 Heat of formation + Delta-G solvation = 28.150617 kcal Electronic energy + Delta-G solvation = -12101.709990 eV Core-core repulsion = 10125.693004 eV Total energy + Delta-G solvation = -1976.016985 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.69186 -34.27369 -32.05591 -31.17819 -27.03585 -26.83233 -25.85624 -22.43063 -21.31099 -18.25391 -16.79564 -15.57364 -14.77884 -14.50061 -14.19955 -13.84791 -13.18055 -12.64063 -12.33185 -12.00206 -11.76723 -11.53965 -11.40646 -11.09376 -10.61189 -10.54580 -10.15642 -9.99538 -9.72426 -9.41681 -8.62987 -7.97177 -6.88833 -5.91234 -3.25695 3.35766 3.52124 3.57313 4.56604 4.61322 4.99914 5.30622 5.41452 5.58876 5.64669 5.88049 5.93804 6.01932 6.08004 6.19257 6.20453 6.31867 6.42256 6.50342 6.67352 6.72729 6.78221 6.98291 7.57077 7.85651 7.98673 8.36037 8.97440 9.76084 10.16407 11.24847 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.056589 B = 0.015487 C = 0.014099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 494.679817 B = 1807.560166 C = 1985.410905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.088 3.912 3 C -0.135 4.135 4 C 0.165 3.835 5 N -0.606 5.606 6 C -0.256 4.256 7 H 0.085 0.915 8 C 0.021 3.979 9 N -0.911 5.911 10 Si 0.884 3.116 11 H -0.290 1.290 12 H -0.304 1.304 13 H -0.269 1.269 14 C 0.129 3.871 15 C 0.039 3.961 16 N -0.676 5.676 17 H 0.037 0.963 18 H 0.054 0.946 19 H 0.073 0.927 20 H 0.059 0.941 21 H 0.058 0.942 22 H 0.047 0.953 23 H 0.061 0.939 24 H 0.028 0.972 25 H 0.262 0.738 26 H 0.031 0.969 27 H 0.071 0.929 28 H 0.037 0.963 29 H 0.062 0.938 30 H 0.326 0.674 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.517 8.523 7.843 11.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.004 4.004 3 C -0.193 4.193 4 C 0.038 3.962 5 N -0.330 5.330 6 C -0.384 4.384 7 H 0.103 0.897 8 C -0.178 4.178 9 N -0.555 5.555 10 Si 0.714 3.286 11 H -0.218 1.218 12 H -0.233 1.233 13 H -0.194 1.194 14 C 0.004 3.996 15 C -0.091 4.091 16 N -0.307 5.307 17 H 0.056 0.944 18 H 0.073 0.927 19 H 0.092 0.908 20 H 0.078 0.922 21 H 0.077 0.923 22 H 0.066 0.934 23 H 0.080 0.920 24 H 0.046 0.954 25 H 0.072 0.928 26 H 0.049 0.951 27 H 0.089 0.911 28 H 0.055 0.945 29 H 0.081 0.919 30 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 3.053 8.161 7.435 11.454 hybrid contribution -0.215 -0.499 0.692 0.880 sum 2.838 7.661 8.127 11.524 Atomic orbital electron populations 1.22371 0.97007 1.03085 1.00293 1.21503 0.92743 0.93263 0.92918 1.21772 1.01503 0.94988 1.01044 1.20994 0.96788 0.84611 0.93798 1.44367 1.68188 1.06799 1.13620 1.18929 1.21685 0.91391 1.06420 0.89733 1.25248 0.98105 0.96535 0.97896 1.69834 1.33944 1.07839 1.43857 0.86934 0.85267 0.79054 0.77305 1.21773 1.23281 1.19376 1.21411 0.97695 0.95063 0.85480 1.22497 0.97767 0.89659 0.99206 1.60529 1.62891 1.03136 1.04139 0.94438 0.92713 0.90845 0.92158 0.92325 0.93416 0.92009 0.95435 0.92849 0.95066 0.91083 0.94478 0.91924 0.85728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.88 8.05 37.16 0.30 -2.58 16 2 C 0.09 1.51 0.96 -131.47 -0.13 1.38 16 3 C -0.13 -1.85 8.71 37.16 0.32 -1.52 16 4 C 0.16 3.42 5.37 -3.60 -0.02 3.40 16 5 N -0.61 -14.89 2.29 -172.01 -0.39 -15.28 16 6 C -0.26 -7.29 10.08 -15.06 -0.15 -7.44 16 7 H 0.09 2.56 8.05 -52.48 -0.42 2.13 16 8 C 0.02 0.61 5.25 -17.43 -0.09 0.52 16 9 N -0.91 -28.33 13.97 55.49 0.78 -27.56 16 10 Si 0.88 22.96 24.32 -169.99 -4.13 18.83 16 11 H -0.29 -7.26 6.68 56.52 0.38 -6.88 16 12 H -0.30 -8.03 7.11 56.52 0.40 -7.62 16 13 H -0.27 -6.95 6.42 56.52 0.36 -6.58 16 14 C 0.13 2.96 4.34 -3.60 -0.02 2.94 16 15 C 0.04 0.73 6.33 -3.70 -0.02 0.71 16 16 N -0.68 -11.47 6.30 -99.70 -0.63 -12.10 16 17 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 18 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 19 H 0.07 1.48 5.92 -51.93 -0.31 1.17 16 20 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 21 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 22 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.06 1.27 7.95 -51.93 -0.41 0.86 16 24 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 26 H 0.03 0.73 6.84 -51.93 -0.36 0.38 16 27 H 0.07 1.75 4.63 -51.93 -0.24 1.51 16 28 H 0.04 0.71 6.10 -51.93 -0.32 0.39 16 29 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.33 4.67 8.77 -39.29 -0.34 4.32 16 LS Contribution 229.75 15.07 3.46 3.46 Total: -1.00 -30.65 229.75 -5.28 -35.93 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: -4.56 Total: -0.69 kcal Atomic # 6 Polarization: -2.79 SS G_CDS: 0.20 Total: -2.59 kcal Atomic # 7 Polarization: -54.69 SS G_CDS: -0.25 Total: -54.94 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -4.13 Total: 18.83 kcal Total LS contribution 3.46 Total: 3.46 kcal Total: -30.65 -5.28 -35.93 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307552569.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.076 kcal (2) G-P(sol) polarization free energy of solvation -30.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds