Wall clock time and date at job start Mon Mar 30 2020 02:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.51269 * 2 1 4 4 C 1.53235 * 109.49185 * 239.93190 * 2 1 3 5 5 N 1.47079 * 108.52078 * 293.86784 * 4 2 1 6 6 C 1.36939 * 120.88157 * 128.84198 * 5 4 2 7 7 H 1.08004 * 119.99670 * 333.66720 * 6 5 4 8 8 C 1.38806 * 120.00437 * 153.67124 * 6 5 4 9 9 N 1.31616 * 120.00290 * 159.61583 * 8 6 5 10 10 Si 1.86804 * 119.99870 * 339.62424 * 8 6 5 11 11 H 1.48500 * 109.47134 * 94.33134 * 10 8 6 12 12 H 1.48495 * 109.46843 * 214.33437 * 10 8 6 13 13 H 1.48500 * 109.46835 * 334.32902 * 10 8 6 14 14 C 1.47076 * 118.23990 * 308.81620 * 5 4 2 15 15 C 1.53246 * 108.52119 * 51.18562 * 14 5 4 16 16 N 1.46903 * 109.33789 * 306.16902 * 15 14 5 17 17 H 1.09003 * 109.46734 * 299.93236 * 1 2 3 18 18 H 1.09004 * 109.47089 * 59.93541 * 1 2 3 19 19 H 1.08995 * 109.47049 * 179.97438 * 1 2 3 20 20 H 1.08997 * 109.47156 * 180.02562 * 3 2 1 21 21 H 1.09003 * 109.46840 * 300.06217 * 3 2 1 22 22 H 1.08993 * 109.47495 * 60.06829 * 3 2 1 23 23 H 1.08995 * 109.63184 * 53.58271 * 4 2 1 24 24 H 1.09005 * 109.62861 * 173.96601 * 4 2 1 25 25 H 0.97004 * 120.00530 * 180.02562 * 9 8 6 26 26 H 1.09004 * 109.63141 * 291.48001 * 14 5 4 27 27 H 1.09000 * 109.62867 * 170.89460 * 14 5 4 28 28 H 1.08990 * 109.49263 * 66.12927 * 15 14 5 29 29 H 1.08994 * 109.49200 * 186.19039 * 15 14 5 30 30 H 1.00894 * 111.00068 * 187.25153 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0411 1.4421 0.0000 4 6 2.0414 -0.7238 -1.2501 5 7 1.6653 -2.1425 -1.1553 6 6 1.0190 -2.7688 -2.1873 7 1 0.4115 -2.1950 -2.8716 8 6 1.1444 -4.1411 -2.3541 9 7 0.2494 -4.8034 -3.0560 10 14 2.5835 -5.0481 -1.5819 11 1 2.1761 -5.5889 -0.2603 12 1 2.9970 -6.1656 -2.4680 13 1 3.7213 -4.1106 -1.4039 14 6 2.0023 -2.8708 0.0772 15 6 1.4924 -2.0625 1.2752 16 7 2.0202 -0.6937 1.1986 17 1 -0.3633 0.5128 0.8906 18 1 -0.3633 0.5149 -0.8894 19 1 -0.3633 -1.0276 -0.0005 20 1 3.1311 1.4414 -0.0005 21 1 1.6772 1.9565 -0.8895 22 1 1.6792 1.9559 0.8905 23 1 1.5890 -0.2837 -2.1388 24 1 3.1260 -0.6326 -1.3081 25 1 0.3369 -5.7624 -3.1722 26 1 3.0835 -2.9889 0.1488 27 1 1.5240 -3.8502 0.0662 28 1 0.4031 -2.0338 1.2575 29 1 1.8290 -2.5312 2.1999 30 1 1.7981 -0.1732 2.0338 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307552569.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:53 Heat of formation + Delta-G solvation = 5.149024 kcal Electronic energy + Delta-G solvation = -12102.707414 eV Core-core repulsion = 10125.693004 eV Total energy + Delta-G solvation = -1977.014409 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.23692 -36.11293 -33.67960 -33.17397 -28.58138 -28.10281 -27.77172 -24.19147 -23.06561 -19.79777 -18.82922 -17.40210 -16.27732 -16.16685 -15.99170 -15.51626 -14.67551 -14.47534 -14.00455 -13.92459 -13.26877 -12.97385 -12.89165 -12.52665 -12.41777 -12.04844 -12.00359 -11.74850 -11.46800 -11.44355 -10.73419 -9.43076 -8.85775 -8.18026 -5.48605 1.27840 1.39805 1.49726 2.39990 3.03585 3.21795 3.38527 4.00734 4.17464 4.25771 4.35009 4.42125 4.56466 4.74143 4.75992 4.85087 4.94979 4.99270 5.01905 5.16597 5.20480 5.30958 5.53479 5.81434 6.09883 6.15154 6.66389 6.88569 7.60206 8.03599 9.01938 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.056589 B = 0.015487 C = 0.014099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 494.679817 B = 1807.560166 C = 1985.410905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.092 3.908 3 C -0.127 4.127 4 C 0.157 3.843 5 N -0.619 5.619 6 C -0.245 4.245 7 H 0.052 0.948 8 C -0.036 4.036 9 N -0.958 5.958 10 Si 0.949 3.051 11 H -0.274 1.274 12 H -0.310 1.310 13 H -0.265 1.265 14 C 0.123 3.877 15 C 0.048 3.952 16 N -0.674 5.674 17 H 0.066 0.934 18 H 0.052 0.948 19 H 0.036 0.964 20 H 0.062 0.938 21 H 0.066 0.934 22 H 0.072 0.928 23 H 0.054 0.946 24 H 0.028 0.972 25 H 0.262 0.738 26 H 0.030 0.970 27 H 0.050 0.950 28 H 0.030 0.970 29 H 0.093 0.907 30 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.592 9.935 10.013 14.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.000 4.000 3 C -0.185 4.185 4 C 0.032 3.968 5 N -0.343 5.343 6 C -0.374 4.374 7 H 0.070 0.930 8 C -0.231 4.231 9 N -0.604 5.604 10 Si 0.778 3.222 11 H -0.201 1.201 12 H -0.239 1.239 13 H -0.190 1.190 14 C -0.003 4.003 15 C -0.082 4.082 16 N -0.307 5.307 17 H 0.085 0.915 18 H 0.071 0.929 19 H 0.055 0.945 20 H 0.081 0.919 21 H 0.085 0.915 22 H 0.091 0.909 23 H 0.072 0.928 24 H 0.046 0.954 25 H 0.070 0.930 26 H 0.048 0.952 27 H 0.069 0.931 28 H 0.048 0.952 29 H 0.111 0.889 30 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 4.144 9.618 9.652 14.243 hybrid contribution -0.585 -0.846 -0.006 1.028 sum 3.559 8.773 9.646 13.516 Atomic orbital electron populations 1.22291 0.97050 1.01065 1.01680 1.21418 0.92589 0.94807 0.91178 1.21705 1.01635 0.92371 1.02749 1.21206 0.96807 0.82876 0.95956 1.44479 1.68179 1.08280 1.13411 1.18863 1.20623 0.91346 1.06600 0.93041 1.25857 1.00319 0.97513 0.99397 1.69957 1.35814 1.08108 1.46567 0.85881 0.81846 0.77518 0.76965 1.20079 1.23937 1.19015 1.21455 0.97391 0.94952 0.86455 1.22308 0.97278 0.90390 0.98254 1.60438 1.62637 1.02553 1.05043 0.91526 0.92865 0.94491 0.91891 0.91528 0.90890 0.92755 0.95402 0.92954 0.95188 0.93142 0.95169 0.88897 0.83168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.19 8.05 71.98 0.58 -4.61 16 2 C 0.09 2.91 0.96 3.61 0.00 2.91 16 3 C -0.13 -2.96 8.71 71.98 0.63 -2.33 16 4 C 0.16 6.36 5.37 86.35 0.46 6.83 16 5 N -0.62 -30.28 2.29 -698.13 -1.60 -31.88 16 6 C -0.24 -14.28 10.08 84.03 0.85 -13.43 16 7 H 0.05 3.27 8.05 -2.91 -0.02 3.25 16 8 C -0.04 -2.18 5.25 84.86 0.45 -1.73 16 9 N -0.96 -61.33 13.97 21.65 0.30 -61.03 16 10 Si 0.95 48.11 24.32 68.60 1.67 49.78 16 11 H -0.27 -13.07 6.68 99.48 0.66 -12.40 16 12 H -0.31 -15.91 7.11 99.48 0.71 -15.21 16 13 H -0.27 -13.15 6.42 99.48 0.64 -12.51 16 14 C 0.12 5.43 4.34 86.35 0.37 5.80 16 15 C 0.05 1.67 6.33 86.39 0.55 2.22 16 16 N -0.67 -20.37 6.30 -469.35 -2.96 -23.33 16 17 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 18 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 19 H 0.04 1.45 5.92 -2.39 -0.01 1.44 16 20 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 21 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 22 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 23 H 0.05 2.23 7.95 -2.39 -0.02 2.21 16 24 H 0.03 1.13 8.14 -2.38 -0.02 1.11 16 25 H 0.26 15.89 8.31 -92.71 -0.77 15.12 16 26 H 0.03 1.34 6.84 -2.38 -0.02 1.33 16 27 H 0.05 2.43 4.63 -2.39 -0.01 2.42 16 28 H 0.03 1.10 6.10 -2.39 -0.01 1.08 16 29 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 30 H 0.35 8.28 8.77 -89.70 -0.79 7.49 16 Total: -1.00 -66.72 229.75 1.52 -65.20 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: 0.22 Total: 5.61 kcal Atomic # 6 Polarization: -8.24 SS G_CDS: 3.89 Total: -4.35 kcal Atomic # 7 Polarization: -111.99 SS G_CDS: -4.25 Total: -116.24 kcal Atomic # 14 Polarization: 48.11 SS G_CDS: 1.67 Total: 49.78 kcal Total: -66.72 1.52 -65.20 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307552569.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.351 kcal (2) G-P(sol) polarization free energy of solvation -66.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds