Wall clock time and date at job start Mon Mar 30 2020 02:36:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46898 * 109.47049 * 2 1 4 4 C 1.47480 * 111.00405 * 265.97434 * 3 2 1 5 5 C 1.53515 * 87.93275 * 221.29694 * 4 3 2 6 6 N 1.46905 * 114.17241 * 139.66772 * 5 4 3 7 7 C 1.46897 * 110.99773 * 111.15700 * 6 5 4 8 8 C 1.50703 * 109.46634 * 180.02562 * 7 6 5 9 9 H 1.08000 * 120.00313 * 0.02562 * 8 7 6 10 10 C 1.37884 * 119.99746 * 180.02562 * 8 7 6 11 11 N 1.31508 * 119.99954 * 180.02562 * 10 8 7 12 12 Si 1.86802 * 119.99647 * 0.02562 * 10 8 7 13 13 H 1.48502 * 109.46837 * 90.00319 * 12 10 8 14 14 H 1.48507 * 109.46520 * 209.99821 * 12 10 8 15 15 H 1.48497 * 109.47528 * 329.99948 * 12 10 8 16 16 C 1.47486 * 110.99952 * 170.00069 * 3 2 1 17 17 H 1.09001 * 109.47065 * 299.99843 * 1 2 3 18 18 H 1.09005 * 109.47224 * 59.99614 * 1 2 3 19 19 H 1.09001 * 109.46851 * 179.97438 * 1 2 3 20 20 H 1.09001 * 109.47065 * 240.00156 * 2 1 3 21 21 H 1.09005 * 109.47224 * 120.00386 * 2 1 3 22 22 H 1.09005 * 113.47310 * 336.06042 * 4 3 2 23 23 H 1.08990 * 113.48150 * 106.52863 * 4 3 2 24 24 H 1.08994 * 114.17159 * 272.37520 * 5 4 3 25 25 H 1.00896 * 110.99579 * 235.11674 * 6 5 4 26 26 H 1.08994 * 109.47274 * 300.00304 * 7 6 5 27 27 H 1.08995 * 109.46769 * 60.00606 * 7 6 5 28 28 H 0.96998 * 120.00188 * 180.02562 * 11 10 8 29 29 H 1.09005 * 113.47586 * 253.47470 * 16 3 2 30 30 H 1.08996 * 113.47223 * 23.93957 * 16 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 2.2870 1.8511 -1.3734 5 6 3.5605 2.5211 -0.8386 6 7 4.7238 2.3976 -1.7272 7 6 5.0858 3.6989 -2.3046 8 6 6.2799 3.5326 -3.2087 9 1 6.7251 2.5576 -3.3415 10 6 6.8041 4.6252 -3.8664 11 7 7.8459 4.4800 -4.6558 12 14 6.0345 6.3116 -3.6362 13 1 6.6847 7.0005 -2.4925 14 1 6.2242 7.1150 -4.8707 15 1 4.5828 6.1602 -3.3624 16 6 3.4743 1.4313 0.2391 17 1 -0.3633 0.5138 0.8900 18 1 -0.3634 0.5139 -0.8900 19 1 -0.3633 -1.0277 -0.0005 20 1 1.8934 -0.5138 -0.8900 21 1 1.8934 -0.5139 0.8900 22 1 2.4846 1.0415 -2.0760 23 1 1.5462 2.5598 -1.7434 24 1 3.4085 3.5330 -0.4633 25 1 5.5072 1.9866 -1.2421 26 1 4.2457 4.0872 -2.8804 27 1 5.3305 4.3963 -1.5035 28 1 8.2149 5.2487 -5.1182 29 1 3.7395 1.7842 1.2357 30 1 3.9886 0.5097 -0.0332 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307681065.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:29 Heat of formation + Delta-G solvation = 10.272823 kcal Electronic energy + Delta-G solvation = -11097.142596 eV Core-core repulsion = 9120.350371 eV Total energy + Delta-G solvation = -1976.792225 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.08562 -36.48094 -34.49674 -32.89172 -29.38205 -27.05377 -26.46471 -23.39254 -22.32151 -20.83585 -18.90169 -16.97513 -16.90347 -16.58826 -16.17744 -15.36122 -14.69340 -14.51068 -14.12746 -13.76259 -13.50072 -13.30936 -12.85320 -12.63180 -12.43915 -11.85746 -11.84691 -11.74682 -11.41027 -11.30242 -10.82751 -9.93873 -9.22238 -8.31192 -6.35972 1.34760 1.36980 1.48324 2.33643 2.98942 3.03340 3.50967 3.52657 4.00049 4.11756 4.26504 4.36282 4.52689 4.64175 4.68115 4.75328 4.84983 4.90468 4.98308 5.01299 5.10551 5.28738 5.42940 5.52353 5.95247 6.10210 6.52588 6.62906 6.74276 7.29347 8.85528 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.084784 B = 0.007792 C = 0.007537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 330.172649 B = 3592.370874 C = 3714.111002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.011 3.989 3 N -0.479 5.479 4 C 0.012 3.988 5 C 0.043 3.957 6 N -0.674 5.674 7 C 0.175 3.825 8 C -0.530 4.530 9 H 0.038 0.962 10 C 0.009 3.991 11 N -0.947 5.947 12 Si 0.951 3.049 13 H -0.265 1.265 14 H -0.280 1.280 15 H -0.251 1.251 16 C 0.005 3.995 17 H 0.059 0.941 18 H 0.046 0.954 19 H 0.073 0.927 20 H 0.044 0.956 21 H 0.081 0.919 22 H 0.071 0.929 23 H 0.077 0.923 24 H 0.075 0.925 25 H 0.341 0.659 26 H 0.024 0.976 27 H -0.012 1.012 28 H 0.268 0.732 29 H 0.094 0.906 30 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.662 -5.203 10.250 17.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.117 4.117 3 N -0.202 5.202 4 C -0.118 4.118 5 C -0.068 4.068 6 N -0.305 5.305 7 C 0.046 3.954 8 C -0.568 4.568 9 H 0.057 0.943 10 C -0.189 4.189 11 N -0.587 5.587 12 Si 0.774 3.226 13 H -0.190 1.190 14 H -0.206 1.206 15 H -0.175 1.175 16 C -0.125 4.125 17 H 0.078 0.922 18 H 0.065 0.935 19 H 0.092 0.908 20 H 0.062 0.938 21 H 0.099 0.901 22 H 0.089 0.911 23 H 0.096 0.904 24 H 0.093 0.907 25 H 0.159 0.841 26 H 0.042 0.958 27 H 0.006 0.994 28 H 0.077 0.923 29 H 0.112 0.888 30 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -13.415 -4.988 10.042 17.484 hybrid contribution 1.097 0.574 -0.151 1.248 sum -12.318 -4.414 9.892 16.403 Atomic orbital electron populations 1.21627 0.93692 1.02172 1.01971 1.22730 0.97803 0.89572 1.01612 1.68853 1.13841 1.20664 1.16808 1.24002 0.96429 0.99761 0.91584 1.23210 0.92278 0.98164 0.93126 1.60491 1.08667 1.25212 1.36149 1.19796 0.94632 0.87605 0.93328 1.21350 1.13094 0.95361 1.27034 0.94342 1.25875 0.95101 1.03633 0.94265 1.70046 1.25060 1.32465 1.31171 0.85661 0.80107 0.78671 0.78153 1.19011 1.20583 1.17502 1.24054 0.90194 0.98434 0.99791 0.92223 0.93490 0.90796 0.93801 0.90055 0.91078 0.90425 0.90736 0.84052 0.95815 0.99408 0.92298 0.88813 0.90274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 10.24 71.98 0.74 -1.80 16 2 C 0.01 0.25 5.54 86.30 0.48 0.72 16 3 N -0.48 -12.52 6.33 -927.82 -5.88 -18.39 16 4 C 0.01 0.36 7.52 83.58 0.63 0.99 16 5 C 0.04 1.41 4.48 45.37 0.20 1.61 16 6 N -0.67 -27.31 6.58 -494.66 -3.25 -30.56 16 7 C 0.18 8.41 4.35 85.56 0.37 8.79 16 8 C -0.53 -30.92 9.87 25.60 0.25 -30.67 16 9 H 0.04 2.48 8.06 -2.91 -0.02 2.45 16 10 C 0.01 0.52 5.47 84.66 0.46 0.99 16 11 N -0.95 -59.43 13.96 21.45 0.30 -59.13 16 12 Si 0.95 44.25 27.47 68.60 1.88 46.14 16 13 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 14 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 15 H -0.25 -11.00 6.54 99.48 0.65 -10.35 16 16 C 0.00 0.12 7.28 83.58 0.61 0.73 16 17 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 18 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 19 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 20 H 0.04 0.97 7.30 -2.39 -0.02 0.95 16 21 H 0.08 1.54 8.08 -2.38 -0.02 1.52 16 22 H 0.07 2.20 7.42 -2.38 -0.02 2.18 16 23 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 24 H 0.07 2.51 7.88 -2.39 -0.02 2.49 16 25 H 0.34 13.32 8.56 -89.70 -0.77 12.55 16 26 H 0.02 1.16 7.20 -2.39 -0.02 1.14 16 27 H -0.01 -0.55 7.57 -2.39 -0.02 -0.57 16 28 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 29 H 0.09 2.21 8.14 -2.38 -0.02 2.19 16 30 H 0.08 2.00 7.91 -2.39 -0.02 1.98 16 Total: -1.00 -64.05 248.84 -2.92 -66.97 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: 0.28 Total: 13.62 kcal Atomic # 6 Polarization: -22.38 SS G_CDS: 3.74 Total: -18.64 kcal Atomic # 7 Polarization: -99.26 SS G_CDS: -8.83 Total: -108.08 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 1.88 Total: 46.14 kcal Total: -64.05 -2.92 -66.97 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307681065.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.241 kcal (2) G-P(sol) polarization free energy of solvation -64.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds