Wall clock time and date at job start Mon Mar 30 2020 02:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46900 * 111.00321 * 2 1 4 4 C 1.46898 * 111.00353 * 123.95852 * 2 1 3 5 5 C 1.52998 * 109.47199 * 66.03959 * 4 2 1 6 6 C 1.53497 * 114.20630 * 175.00254 * 5 4 2 7 7 N 1.47068 * 87.98647 * 87.71965 * 6 5 4 8 8 C 1.36929 * 136.05715 * 207.08312 * 7 6 5 9 9 H 1.07998 * 120.00301 * 7.07086 * 8 7 6 10 10 C 1.38816 * 120.00010 * 187.06995 * 8 7 6 11 11 N 1.31614 * 120.00188 * 172.39295 * 10 8 7 12 12 Si 1.86802 * 119.99933 * 352.38748 * 10 8 7 13 13 H 1.48497 * 109.47522 * 175.32155 * 12 10 8 14 14 H 1.48501 * 109.47162 * 295.32896 * 12 10 8 15 15 H 1.48504 * 109.46907 * 55.32524 * 12 10 8 16 16 C 1.47075 * 87.88242 * 27.34179 * 7 6 5 17 17 H 1.09003 * 109.46665 * 296.04197 * 1 2 3 18 18 H 1.09001 * 109.47304 * 56.03840 * 1 2 3 19 19 H 1.09002 * 109.47428 * 176.04812 * 1 2 3 20 20 H 1.08996 * 109.47647 * 183.95420 * 3 2 1 21 21 H 1.09007 * 109.47234 * 303.96047 * 3 2 1 22 22 H 1.09006 * 109.46760 * 63.95340 * 3 2 1 23 23 H 1.09010 * 109.46840 * 306.04308 * 4 2 1 24 24 H 1.08995 * 109.47426 * 186.04483 * 4 2 1 25 25 H 1.09005 * 113.28007 * 41.93753 * 5 4 2 26 26 H 1.09003 * 113.46858 * 332.94222 * 6 5 4 27 27 H 1.09004 * 113.46682 * 202.49971 * 6 5 4 28 28 H 0.97001 * 120.00381 * 4.55231 * 11 10 8 29 29 H 1.08996 * 113.46654 * 87.43765 * 16 7 6 30 30 H 1.09001 * 113.46269 * 217.87572 * 16 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 1.6314 -2.2426 0.9702 6 6 2.2333 -3.1643 2.0400 7 7 1.0499 -2.8892 2.8687 8 6 0.7674 -2.8691 4.2084 9 1 1.5626 -2.9859 4.9298 10 6 -0.5411 -2.6985 4.6393 11 7 -0.8359 -2.8281 5.9155 12 14 -1.8836 -2.2848 3.4080 13 1 -3.1989 -2.2669 4.0970 14 1 -1.6171 -0.9496 2.8151 15 1 -1.9019 -3.3091 2.3329 16 6 0.3017 -2.6515 1.6249 17 1 -0.3633 0.4512 0.9234 18 1 -0.3634 0.5741 -0.8524 19 1 -0.3634 -1.0252 -0.0708 20 1 3.0828 1.3432 -0.0709 21 1 1.5898 1.9164 -0.8524 22 1 1.7044 1.8723 0.9234 23 1 1.5612 -0.3873 2.0628 24 1 3.0797 -0.6612 1.1755 25 1 1.7540 -2.6036 -0.0510 26 1 3.1609 -2.7845 2.4683 27 1 2.3093 -4.2047 1.7237 28 1 -0.1298 -2.9773 6.5637 29 1 -0.1314 -3.5567 1.1993 30 1 -0.4163 -1.8349 1.6997 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307759495.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:26 Heat of formation + Delta-G solvation = 67.995295 kcal Electronic energy + Delta-G solvation = -11774.660599 eV Core-core repulsion = 9800.371408 eV Total energy + Delta-G solvation = -1974.289190 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.03714 -36.28517 -32.39809 -29.14153 -27.51906 -26.37867 -25.11594 -22.53112 -21.00865 -18.84729 -17.41009 -15.56495 -15.14239 -15.08078 -14.33577 -13.97979 -13.63162 -13.08670 -12.37037 -12.12611 -11.80874 -11.53563 -11.36438 -11.06980 -10.88908 -10.49002 -10.26045 -10.10130 -9.15755 -9.03125 -8.81083 -8.12963 -7.07080 -6.28726 -3.17439 3.40509 3.44846 3.66035 4.19545 4.61502 4.87601 5.08309 5.31579 5.36756 5.48876 5.60177 5.72666 5.85035 5.93120 6.00819 6.07550 6.15913 6.24619 6.33739 6.37020 6.47163 6.50657 6.93067 7.19588 7.27448 7.30888 8.27285 9.02094 9.55248 10.44264 11.24441 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.044843 B = 0.014730 C = 0.012940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.251785 B = 1900.408569 C = 2163.376139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.548 5.548 3 C 0.025 3.975 4 C 0.081 3.919 5 C -0.126 4.126 6 C 0.126 3.874 7 N -0.630 5.630 8 C -0.301 4.301 9 H 0.081 0.919 10 C -0.028 4.028 11 N -0.937 5.937 12 Si 1.071 2.929 13 H -0.296 1.296 14 H -0.295 1.295 15 H -0.287 1.287 16 C 0.098 3.902 17 H 0.027 0.973 18 H 0.061 0.939 19 H 0.074 0.926 20 H 0.065 0.935 21 H 0.064 0.936 22 H 0.023 0.977 23 H 0.048 0.952 24 H 0.070 0.930 25 H 0.080 0.920 26 H 0.043 0.957 27 H 0.039 0.961 28 H 0.260 0.740 29 H 0.043 0.957 30 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.967 5.324 -12.460 14.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.272 5.272 3 C -0.124 4.124 4 C -0.047 4.047 5 C -0.146 4.146 6 C -0.001 4.001 7 N -0.359 5.359 8 C -0.427 4.427 9 H 0.099 0.901 10 C -0.226 4.226 11 N -0.580 5.580 12 Si 0.904 3.096 13 H -0.224 1.224 14 H -0.224 1.224 15 H -0.213 1.213 16 C -0.028 4.028 17 H 0.046 0.954 18 H 0.080 0.920 19 H 0.093 0.907 20 H 0.084 0.916 21 H 0.082 0.918 22 H 0.042 0.958 23 H 0.066 0.934 24 H 0.089 0.911 25 H 0.099 0.901 26 H 0.061 0.939 27 H 0.056 0.944 28 H 0.070 0.930 29 H 0.060 0.940 30 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.445 5.351 -12.758 14.050 hybrid contribution 1.380 0.026 0.978 1.691 sum 3.824 5.377 -11.780 13.503 Atomic orbital electron populations 1.22519 0.87644 1.02726 1.00082 1.62059 1.08055 1.13179 1.43868 1.22347 1.00445 0.89383 1.00190 1.21768 0.99196 0.92314 0.91373 1.22920 0.98764 0.94675 0.98226 1.22364 0.92224 0.95889 0.89626 1.46050 1.07813 1.81758 1.00274 1.20135 0.95392 1.48354 0.78848 0.90114 1.25709 0.97101 0.99626 1.00196 1.70918 1.34377 1.51767 1.00966 0.83681 0.75858 0.76034 0.73987 1.22360 1.22351 1.21349 1.22954 0.94576 0.97848 0.87374 0.95404 0.91990 0.90739 0.91632 0.91768 0.95797 0.93398 0.91115 0.90139 0.93865 0.94362 0.93020 0.93969 0.93197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 8.55 60.06 0.51 0.80 16 2 N -0.55 -8.44 5.02 -251.25 -1.26 -9.70 16 3 C 0.02 0.32 9.57 60.06 0.57 0.89 16 4 C 0.08 1.40 4.84 -3.83 -0.02 1.39 16 5 C -0.13 -2.30 3.73 -89.97 -0.34 -2.63 16 6 C 0.13 2.57 8.25 -8.50 -0.07 2.50 16 7 N -0.63 -16.01 3.54 -184.57 -0.65 -16.67 16 8 C -0.30 -8.93 11.08 -15.06 -0.17 -9.09 16 9 H 0.08 2.52 8.05 -52.49 -0.42 2.09 16 10 C -0.03 -0.86 5.50 -17.43 -0.10 -0.95 16 11 N -0.94 -30.31 13.70 55.49 0.76 -29.55 16 12 Si 1.07 27.64 25.14 -169.99 -4.27 23.37 16 13 H -0.30 -7.74 7.11 56.52 0.40 -7.34 16 14 H -0.30 -7.17 6.63 56.52 0.37 -6.80 16 15 H -0.29 -6.92 6.14 56.52 0.35 -6.57 16 16 C 0.10 2.14 4.23 -8.36 -0.04 2.10 16 17 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 18 H 0.06 0.78 8.12 -51.93 -0.42 0.36 16 19 H 0.07 1.18 5.80 -51.93 -0.30 0.88 16 20 H 0.06 0.75 8.12 -51.93 -0.42 0.33 16 21 H 0.06 0.70 8.12 -51.93 -0.42 0.28 16 22 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 23 H 0.05 0.98 7.91 -51.92 -0.41 0.57 16 24 H 0.07 1.12 8.06 -51.93 -0.42 0.70 16 25 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 26 H 0.04 0.85 8.12 -51.93 -0.42 0.43 16 27 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.26 8.28 8.73 -40.82 -0.36 7.93 16 29 H 0.04 0.91 7.71 -51.93 -0.40 0.51 16 30 H 0.05 1.13 3.05 -51.93 -0.16 0.97 16 LS Contribution 237.38 15.07 3.58 3.58 Total: -1.00 -32.30 237.38 -6.21 -38.50 By element: Atomic # 1 Polarization: 0.20 SS G_CDS: -4.72 Total: -4.52 kcal Atomic # 6 Polarization: -5.37 SS G_CDS: 0.37 Total: -5.01 kcal Atomic # 7 Polarization: -54.77 SS G_CDS: -1.15 Total: -55.92 kcal Atomic # 14 Polarization: 27.64 SS G_CDS: -4.27 Total: 23.37 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -32.30 -6.21 -38.50 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307759495.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.498 kcal (2) G-P(sol) polarization free energy of solvation -32.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds