Wall clock time and date at job start Mon Mar 30 2020 02:12:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46902 * 110.78325 * 2 1 4 4 C 1.54590 * 110.72464 * 123.24792 * 2 1 3 5 5 C 1.53996 * 105.13781 * 140.31513 * 4 2 1 6 6 N 1.47895 * 107.22792 * 1.12901 * 5 4 2 7 7 C 1.46896 * 111.00234 * 214.25294 * 6 5 4 8 8 C 1.50703 * 109.47569 * 175.75475 * 7 6 5 9 9 H 1.08008 * 119.99069 * 5.23184 * 8 7 6 10 10 C 1.37865 * 120.00320 * 185.22527 * 8 7 6 11 11 N 1.31515 * 120.00266 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00037 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.47210 * 0.02562 * 12 10 8 14 14 H 1.48507 * 109.46963 * 120.00246 * 12 10 8 15 15 H 1.48506 * 109.47331 * 240.00205 * 12 10 8 16 16 C 1.48814 * 105.67865 * 334.90157 * 6 5 4 17 17 H 1.08997 * 109.47332 * 298.20411 * 1 2 3 18 18 H 1.09002 * 109.47370 * 58.20148 * 1 2 3 19 19 H 1.08999 * 109.47430 * 178.20262 * 1 2 3 20 20 H 1.00900 * 111.00015 * 61.79036 * 3 2 1 21 21 H 1.00896 * 110.99929 * 185.75079 * 3 2 1 22 22 H 1.09003 * 110.30662 * 21.40113 * 4 2 1 23 23 H 1.08998 * 110.39744 * 259.27618 * 4 2 1 24 24 H 1.09002 * 109.91307 * 120.58257 * 5 4 2 25 25 H 1.09002 * 109.91858 * 241.67174 * 5 4 2 26 26 H 1.09002 * 109.47185 * 295.75798 * 7 6 5 27 27 H 1.09008 * 109.46851 * 55.75627 * 7 6 5 28 28 H 0.96998 * 120.00415 * 179.97438 * 11 10 8 29 29 H 1.08996 * 110.52502 * 280.54704 * 16 6 5 30 30 H 1.09001 * 110.70130 * 157.48912 * 16 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0513 1.3734 0.0000 4 6 2.0771 -0.7927 1.2092 5 6 3.2893 -1.5708 0.6648 6 7 3.4338 -1.2136 -0.7631 7 6 3.9219 -2.3573 -1.5452 8 6 3.9572 -1.9886 -3.0060 9 1 3.7293 -0.9787 -3.3136 10 6 4.2804 -2.9404 -3.9496 11 7 4.5575 -4.1703 -3.5750 12 14 4.3248 -2.4832 -5.7602 13 1 3.9774 -1.0480 -5.9170 14 1 5.6880 -2.7237 -6.2982 15 1 3.3450 -3.3144 -6.5049 16 6 2.0783 -0.7945 -1.2119 17 1 -0.3634 0.4857 0.9056 18 1 -0.3634 0.5415 -0.8734 19 1 -0.3634 -1.0271 -0.0322 20 1 1.7633 1.8695 0.8301 21 1 3.0558 1.3789 -0.0944 22 1 1.3207 -1.4833 1.5823 23 1 2.3893 -0.1112 2.0004 24 1 4.1886 -1.2870 1.2114 25 1 3.1176 -2.6427 0.7639 26 1 4.9256 -2.6227 -1.2131 27 1 3.2548 -3.2072 -1.4010 28 1 4.7846 -4.8400 -4.2389 29 1 1.4560 -1.6663 -1.4137 30 1 2.1444 -0.1556 -2.0926 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000405755689.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:30 Heat of formation + Delta-G solvation = -4.560046 kcal Electronic energy + Delta-G solvation = -11599.277217 eV Core-core repulsion = 9621.841791 eV Total energy + Delta-G solvation = -1977.435426 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.77458 -34.23208 -32.34012 -29.58986 -28.85836 -26.68150 -25.09178 -22.15346 -20.01228 -19.05553 -16.36085 -15.49675 -15.24866 -14.62571 -13.91839 -13.80951 -13.00372 -12.75139 -12.31947 -11.94364 -11.70466 -11.51007 -11.11681 -11.01069 -10.59911 -10.58108 -10.45317 -10.07556 -9.83486 -9.09644 -8.45355 -8.32715 -7.30733 -6.02689 -4.04097 3.31980 3.39273 3.45231 4.44144 4.78746 4.98558 5.05282 5.26406 5.34169 5.46910 5.65660 5.84672 5.94251 6.08041 6.23386 6.29108 6.37924 6.45126 6.54443 6.82183 7.21380 7.35108 7.58070 7.77871 7.85332 7.99894 8.18789 8.52285 9.04972 9.60836 11.08623 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.056895 B = 0.010901 C = 0.009986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.015949 B = 2567.983013 C = 2803.192065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.106 3.894 3 N -0.830 5.830 4 C -0.158 4.158 5 C 0.032 3.968 6 N -0.518 5.518 7 C 0.184 3.816 8 C -0.509 4.509 9 H 0.064 0.936 10 C 0.055 3.945 11 N -0.899 5.899 12 Si 0.897 3.103 13 H -0.271 1.271 14 H -0.284 1.284 15 H -0.285 1.285 16 C 0.065 3.935 17 H 0.048 0.952 18 H 0.063 0.937 19 H 0.057 0.943 20 H 0.329 0.671 21 H 0.352 0.648 22 H 0.063 0.937 23 H 0.060 0.940 24 H 0.063 0.937 25 H 0.036 0.964 26 H 0.028 0.972 27 H -0.004 1.004 28 H 0.260 0.740 29 H 0.043 0.957 30 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.839 6.334 7.547 11.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.012 3.988 3 N -0.360 5.360 4 C -0.199 4.199 5 C -0.097 4.097 6 N -0.243 5.243 7 C 0.058 3.942 8 C -0.547 4.547 9 H 0.083 0.917 10 C -0.146 4.146 11 N -0.539 5.539 12 Si 0.725 3.275 13 H -0.195 1.195 14 H -0.210 1.210 15 H -0.211 1.211 16 C -0.064 4.064 17 H 0.067 0.933 18 H 0.082 0.918 19 H 0.076 0.924 20 H 0.140 0.860 21 H 0.166 0.834 22 H 0.082 0.918 23 H 0.078 0.922 24 H 0.082 0.918 25 H 0.054 0.946 26 H 0.046 0.954 27 H 0.014 0.986 28 H 0.070 0.930 29 H 0.061 0.939 30 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -5.817 6.662 6.721 11.108 hybrid contribution 0.101 -1.036 0.054 1.042 sum -5.716 5.626 6.775 10.499 Atomic orbital electron populations 1.21694 0.94049 1.01490 1.01681 1.21793 0.94032 0.88220 0.94709 1.58783 1.18167 1.14248 1.44787 1.23266 0.98297 0.99826 0.98477 1.22799 0.96784 0.97652 0.92467 1.64893 1.21942 1.37153 1.00276 1.19891 0.95219 0.86231 0.92830 1.21214 1.46301 0.96547 0.90651 0.91738 1.25001 0.95425 0.94888 0.99325 1.69973 1.47588 1.02383 1.33927 0.86443 0.77567 0.78658 0.84801 1.19547 1.21016 1.21106 1.23088 0.89739 0.97252 0.96295 0.93283 0.91831 0.92411 0.85963 0.83370 0.91838 0.92167 0.91816 0.94563 0.95426 0.98644 0.92999 0.93903 0.89659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.78 8.81 37.16 0.33 -1.45 16 2 C 0.11 1.68 1.20 -129.74 -0.16 1.52 16 3 N -0.83 -12.19 9.01 2.24 0.02 -12.17 16 4 C -0.16 -2.39 6.23 -25.38 -0.16 -2.55 16 5 C 0.03 0.59 6.69 -2.76 -0.02 0.57 16 6 N -0.52 -11.45 5.24 -231.64 -1.21 -12.66 16 7 C 0.18 4.92 4.61 -4.98 -0.02 4.90 16 8 C -0.51 -14.55 8.55 -34.44 -0.29 -14.85 16 9 H 0.06 1.84 7.05 -52.48 -0.37 1.47 16 10 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 11 N -0.90 -27.09 13.29 55.43 0.74 -26.35 16 12 Si 0.90 21.96 29.54 -169.99 -5.02 16.94 16 13 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 14 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 15 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 16 C 0.06 1.31 4.78 -1.74 -0.01 1.30 16 17 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 18 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 19 H 0.06 0.77 8.12 -51.93 -0.42 0.35 16 20 H 0.33 3.98 9.05 -39.29 -0.36 3.62 16 21 H 0.35 5.52 8.85 -39.29 -0.35 5.17 16 22 H 0.06 0.90 7.85 -51.93 -0.41 0.49 16 23 H 0.06 0.80 8.05 -51.93 -0.42 0.38 16 24 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 25 H 0.04 0.70 7.66 -51.93 -0.40 0.30 16 26 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.00 -0.12 7.98 -51.92 -0.41 -0.54 16 28 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 29 H 0.04 0.92 7.91 -51.93 -0.41 0.51 16 30 H 0.09 1.87 7.48 -51.93 -0.39 1.48 16 LS Contribution 245.61 15.07 3.70 3.70 Total: -1.00 -29.79 245.61 -6.96 -36.76 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -4.76 Total: 2.86 kcal Atomic # 6 Polarization: -8.65 SS G_CDS: -0.43 Total: -9.08 kcal Atomic # 7 Polarization: -50.73 SS G_CDS: -0.46 Total: -51.18 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -29.79 -6.96 -36.76 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405755689.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.196 kcal (2) G-P(sol) polarization free energy of solvation -29.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds