Wall clock time and date at job start Mon Mar 30 2020 02:12:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46902 * 110.78325 * 2 1 4 4 C 1.54590 * 110.72464 * 123.24792 * 2 1 3 5 5 C 1.53996 * 105.13781 * 140.31513 * 4 2 1 6 6 N 1.47895 * 107.22792 * 1.12901 * 5 4 2 7 7 C 1.46896 * 111.00234 * 214.25294 * 6 5 4 8 8 C 1.50703 * 109.47569 * 175.75475 * 7 6 5 9 9 H 1.08008 * 119.99069 * 5.23184 * 8 7 6 10 10 C 1.37865 * 120.00320 * 185.22527 * 8 7 6 11 11 N 1.31515 * 120.00266 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00037 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.47210 * 0.02562 * 12 10 8 14 14 H 1.48507 * 109.46963 * 120.00246 * 12 10 8 15 15 H 1.48506 * 109.47331 * 240.00205 * 12 10 8 16 16 C 1.48814 * 105.67865 * 334.90157 * 6 5 4 17 17 H 1.08997 * 109.47332 * 298.20411 * 1 2 3 18 18 H 1.09002 * 109.47370 * 58.20148 * 1 2 3 19 19 H 1.08999 * 109.47430 * 178.20262 * 1 2 3 20 20 H 1.00900 * 111.00015 * 61.79036 * 3 2 1 21 21 H 1.00896 * 110.99929 * 185.75079 * 3 2 1 22 22 H 1.09003 * 110.30662 * 21.40113 * 4 2 1 23 23 H 1.08998 * 110.39744 * 259.27618 * 4 2 1 24 24 H 1.09002 * 109.91307 * 120.58257 * 5 4 2 25 25 H 1.09002 * 109.91858 * 241.67174 * 5 4 2 26 26 H 1.09002 * 109.47185 * 295.75798 * 7 6 5 27 27 H 1.09008 * 109.46851 * 55.75627 * 7 6 5 28 28 H 0.96998 * 120.00415 * 179.97438 * 11 10 8 29 29 H 1.08996 * 110.52502 * 280.54704 * 16 6 5 30 30 H 1.09001 * 110.70130 * 157.48912 * 16 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0513 1.3734 0.0000 4 6 2.0771 -0.7927 1.2092 5 6 3.2893 -1.5708 0.6648 6 7 3.4338 -1.2136 -0.7631 7 6 3.9219 -2.3573 -1.5452 8 6 3.9572 -1.9886 -3.0060 9 1 3.7293 -0.9787 -3.3136 10 6 4.2804 -2.9404 -3.9496 11 7 4.5575 -4.1703 -3.5750 12 14 4.3248 -2.4832 -5.7602 13 1 3.9774 -1.0480 -5.9170 14 1 5.6880 -2.7237 -6.2982 15 1 3.3450 -3.3144 -6.5049 16 6 2.0783 -0.7945 -1.2119 17 1 -0.3634 0.4857 0.9056 18 1 -0.3634 0.5415 -0.8734 19 1 -0.3634 -1.0271 -0.0322 20 1 1.7633 1.8695 0.8301 21 1 3.0558 1.3789 -0.0944 22 1 1.3207 -1.4833 1.5823 23 1 2.3893 -0.1112 2.0004 24 1 4.1886 -1.2870 1.2114 25 1 3.1176 -2.6427 0.7639 26 1 4.9256 -2.6227 -1.2131 27 1 3.2548 -3.2072 -1.4010 28 1 4.7846 -4.8400 -4.2389 29 1 1.4560 -1.6663 -1.4137 30 1 2.1444 -0.1556 -2.0926 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000405755689.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:30 Heat of formation + Delta-G solvation = -27.834385 kcal Electronic energy + Delta-G solvation = -11600.286469 eV Core-core repulsion = 9621.841791 eV Total energy + Delta-G solvation = -1978.444677 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.27216 -35.97397 -34.32725 -31.16120 -30.08606 -28.56343 -26.76007 -23.99848 -21.73129 -20.40854 -18.49280 -17.03210 -16.75359 -16.39727 -15.47728 -15.40496 -14.58339 -14.34079 -13.88004 -13.71633 -13.30183 -12.89955 -12.83222 -12.57212 -12.54018 -12.32435 -11.88105 -11.75874 -11.49176 -11.22028 -10.66924 -9.53530 -9.12967 -8.25203 -6.35647 1.38677 1.39228 1.53652 2.37924 3.08027 3.33946 3.61715 3.70762 3.87604 4.15407 4.37078 4.52125 4.77226 4.79238 4.84847 4.93424 5.01270 5.02430 5.12774 5.19243 5.28913 5.38085 5.60627 5.94409 6.18363 6.36888 6.50675 6.77310 6.81285 7.34901 8.86909 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.056895 B = 0.010901 C = 0.009986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.015949 B = 2567.983013 C = 2803.192065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.116 3.884 3 N -0.832 5.832 4 C -0.146 4.146 5 C 0.026 3.974 6 N -0.525 5.525 7 C 0.199 3.801 8 C -0.526 4.526 9 H 0.061 0.939 10 C 0.001 3.999 11 N -0.934 5.934 12 Si 0.971 3.029 13 H -0.264 1.264 14 H -0.276 1.276 15 H -0.276 1.276 16 C 0.063 3.937 17 H 0.077 0.923 18 H 0.059 0.941 19 H 0.057 0.943 20 H 0.349 0.651 21 H 0.347 0.653 22 H 0.078 0.922 23 H 0.089 0.911 24 H 0.074 0.926 25 H 0.022 0.978 26 H 0.000 1.000 27 H -0.035 1.035 28 H 0.265 0.735 29 H 0.024 0.976 30 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.734 7.752 7.952 12.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.022 3.978 3 N -0.363 5.363 4 C -0.186 4.186 5 C -0.102 4.102 6 N -0.249 5.249 7 C 0.072 3.928 8 C -0.564 4.564 9 H 0.079 0.921 10 C -0.197 4.197 11 N -0.575 5.575 12 Si 0.795 3.205 13 H -0.188 1.188 14 H -0.202 1.202 15 H -0.202 1.202 16 C -0.066 4.066 17 H 0.096 0.904 18 H 0.078 0.922 19 H 0.076 0.924 20 H 0.163 0.837 21 H 0.160 0.840 22 H 0.097 0.903 23 H 0.107 0.893 24 H 0.093 0.907 25 H 0.040 0.960 26 H 0.018 0.982 27 H -0.017 1.017 28 H 0.074 0.926 29 H 0.042 0.958 30 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.727 8.102 7.154 12.731 hybrid contribution 0.397 -1.479 -0.025 1.531 sum -6.331 6.624 7.130 11.609 Atomic orbital electron populations 1.21671 0.91923 1.01931 1.02992 1.21681 0.95472 0.88277 0.92356 1.58713 1.17760 1.13590 1.46191 1.23226 0.96762 0.99993 0.98636 1.22919 0.99315 0.97581 0.90425 1.64762 1.23389 1.34835 1.01881 1.19533 0.93217 0.86886 0.93124 1.21469 1.46608 0.96531 0.91813 0.92073 1.25945 0.94668 0.94680 1.04385 1.70093 1.48126 1.03491 1.35753 0.85309 0.77939 0.78679 0.78566 1.18777 1.20177 1.20200 1.23061 0.88699 0.96863 0.97937 0.90407 0.92199 0.92372 0.83722 0.84013 0.90347 0.89270 0.90747 0.95980 0.98157 1.01720 0.92598 0.95778 0.91807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.09 8.81 71.98 0.63 -2.46 16 2 C 0.12 3.43 1.20 4.73 0.01 3.43 16 3 N -0.83 -22.30 9.01 -146.84 -1.32 -23.63 16 4 C -0.15 -4.01 6.23 31.47 0.20 -3.81 16 5 C 0.03 0.95 6.69 86.45 0.58 1.53 16 6 N -0.52 -23.59 5.24 -886.79 -4.64 -28.23 16 7 C 0.20 11.12 4.61 85.56 0.39 11.51 16 8 C -0.53 -30.88 8.55 25.60 0.22 -30.67 16 9 H 0.06 3.56 7.05 -2.91 -0.02 3.54 16 10 C 0.00 0.07 5.46 84.65 0.46 0.54 16 11 N -0.93 -57.44 13.29 21.44 0.28 -57.16 16 12 Si 0.97 45.32 29.54 68.60 2.03 47.34 16 13 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 14 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 15 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 16 C 0.06 2.56 4.78 86.60 0.41 2.98 16 17 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 18 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 19 H 0.06 1.41 8.12 -2.39 -0.02 1.39 16 20 H 0.35 7.12 9.05 -89.69 -0.81 6.31 16 21 H 0.35 10.19 8.85 -89.70 -0.79 9.40 16 22 H 0.08 1.96 7.85 -2.39 -0.02 1.94 16 23 H 0.09 1.99 8.05 -2.39 -0.02 1.97 16 24 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 25 H 0.02 0.86 7.66 -2.39 -0.02 0.84 16 26 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 27 H -0.03 -2.12 7.98 -2.38 -0.02 -2.13 16 28 H 0.27 15.22 8.31 -92.71 -0.77 14.44 16 29 H 0.02 1.06 7.91 -2.39 -0.02 1.04 16 30 H 0.06 2.84 7.48 -2.39 -0.02 2.82 16 Total: -1.00 -65.11 245.61 -1.24 -66.35 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -0.49 Total: 12.27 kcal Atomic # 6 Polarization: -19.85 SS G_CDS: 2.90 Total: -16.95 kcal Atomic # 7 Polarization: -103.33 SS G_CDS: -5.68 Total: -109.01 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.34 kcal Total: -65.11 -1.24 -66.35 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405755689.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.511 kcal (2) G-P(sol) polarization free energy of solvation -65.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds