Wall clock time and date at job start Mon Mar 30 2020 02:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.69891 * 2 1 4 4 C 1.52762 * 109.50903 * 239.87689 * 2 1 3 5 5 C 1.53042 * 109.37765 * 185.70536 * 4 2 1 6 6 C 1.53042 * 109.53952 * 61.24478 * 5 4 2 7 7 H 1.08999 * 109.49514 * 178.68060 * 6 5 4 8 8 N 1.46900 * 109.52357 * 58.59755 * 6 5 4 9 9 C 1.53187 * 109.30750 * 298.63063 * 6 5 4 10 10 N 1.46927 * 108.78119 * 54.63797 * 9 6 5 11 11 C 1.36936 * 120.63374 * 126.36298 * 10 9 6 12 12 H 1.07996 * 120.00181 * 212.72415 * 11 10 9 13 13 C 1.38808 * 119.99801 * 32.72566 * 11 10 9 14 14 N 1.31621 * 119.99940 * 197.65008 * 13 11 10 15 15 Si 1.86802 * 120.00212 * 17.65712 * 13 11 10 16 16 H 1.48500 * 109.46842 * 269.99990 * 15 13 11 17 17 H 1.48497 * 109.47150 * 29.99308 * 15 13 11 18 18 H 1.48493 * 109.47188 * 149.99987 * 15 13 11 19 19 H 1.09001 * 109.47285 * 299.64652 * 1 2 3 20 20 H 1.09002 * 109.46826 * 59.64845 * 1 2 3 21 21 H 1.09002 * 109.46923 * 179.64821 * 1 2 3 22 22 H 1.09000 * 109.56316 * 65.66946 * 4 2 1 23 23 H 1.08995 * 109.38970 * 305.63205 * 4 2 1 24 24 H 1.09002 * 109.46453 * 301.21644 * 5 4 2 25 25 H 1.09002 * 109.44190 * 181.25718 * 5 4 2 26 26 H 1.00896 * 110.99826 * 180.14614 * 8 6 5 27 27 H 1.00896 * 110.99935 * 304.09986 * 8 6 5 28 28 H 1.09001 * 109.59111 * 294.84181 * 9 6 5 29 29 H 1.09004 * 109.58393 * 174.42420 * 9 6 5 30 30 H 0.96999 * 119.99991 * 355.08979 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0402 -0.7226 -1.2455 5 6 3.5638 -0.8462 -1.1725 6 6 3.9523 -1.6686 0.0584 7 1 5.0363 -1.7760 0.0968 8 7 3.3305 -2.9971 -0.0226 9 6 3.4644 -0.9518 1.3211 10 7 2.0225 -0.6994 1.1946 11 6 1.1535 -1.1133 2.1686 12 1 0.1527 -1.4210 1.9042 13 6 1.5592 -1.1374 3.4959 14 7 0.8828 -1.8422 4.3781 15 14 3.0650 -0.1696 4.0302 16 1 4.2729 -1.0241 3.9043 17 1 3.2147 1.0293 3.1668 18 1 2.9043 0.2553 5.4439 19 1 -0.3634 0.5083 0.8931 20 1 -0.3633 0.5193 -0.8868 21 1 -0.3633 -1.0277 -0.0063 22 1 1.7632 -0.1567 -2.1349 23 1 1.5964 -1.7170 -1.2941 24 1 4.0058 0.1475 -1.0995 25 1 3.9311 -1.3418 -2.0711 26 1 3.5706 -3.5582 0.7808 27 1 2.3296 -2.9221 -0.1253 28 1 3.9928 -0.0048 1.4311 29 1 3.6503 -1.5796 2.1926 30 1 0.0613 -2.2867 4.1167 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575481403.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:19 Heat of formation + Delta-G solvation = 9.539331 kcal Electronic energy + Delta-G solvation = -12215.325765 eV Core-core repulsion = 10238.501734 eV Total energy + Delta-G solvation = -1976.824031 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.50216 -33.90587 -32.69951 -30.61879 -29.12489 -25.90750 -24.45421 -22.43423 -20.19383 -18.85629 -17.05319 -15.80848 -14.80728 -14.62232 -13.72352 -13.56703 -13.34846 -13.13702 -12.22610 -11.95621 -11.63940 -11.44524 -11.20253 -10.80108 -10.48620 -10.20817 -9.91471 -9.85277 -9.60598 -9.01770 -8.58948 -8.05777 -6.97611 -6.21019 -3.37110 3.38078 3.52336 3.67990 4.56611 4.94841 5.25176 5.38734 5.47549 5.50061 5.64270 5.92956 6.06672 6.10642 6.22802 6.27722 6.37837 6.43702 6.56254 6.58063 6.69709 6.71324 6.99944 7.09586 7.82017 8.08171 8.11991 8.46106 9.06446 9.60901 10.22860 11.13651 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.040208 B = 0.019456 C = 0.016546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.217626 B = 1438.825907 C = 1691.856695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.165 3.835 3 H 0.025 0.975 4 C -0.132 4.132 5 C -0.103 4.103 6 C 0.070 3.930 7 H 0.067 0.933 8 N -0.838 5.838 9 C 0.093 3.907 10 N -0.600 5.600 11 C -0.341 4.341 12 H 0.070 0.930 13 C -0.015 4.015 14 N -0.924 5.924 15 Si 1.067 2.933 16 H -0.296 1.296 17 H -0.286 1.286 18 H -0.301 1.301 19 H 0.060 0.940 20 H 0.038 0.962 21 H 0.052 0.948 22 H 0.051 0.949 23 H 0.063 0.937 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.333 0.667 27 H 0.346 0.654 28 H 0.024 0.976 29 H 0.071 0.929 30 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.949 2.502 -8.744 9.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.059 3.941 3 H 0.043 0.957 4 C -0.171 4.171 5 C -0.141 4.141 6 C -0.043 4.043 7 H 0.085 0.915 8 N -0.367 5.367 9 C -0.034 4.034 10 N -0.326 5.326 11 C -0.470 4.470 12 H 0.087 0.913 13 C -0.217 4.217 14 N -0.563 5.563 15 Si 0.899 3.101 16 H -0.224 1.224 17 H -0.213 1.213 18 H -0.229 1.229 19 H 0.079 0.921 20 H 0.057 0.943 21 H 0.071 0.929 22 H 0.070 0.930 23 H 0.081 0.919 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.144 0.856 27 H 0.160 0.840 28 H 0.042 0.958 29 H 0.089 0.911 30 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.318 2.742 -8.113 10.081 hybrid contribution -1.430 0.015 -0.364 1.476 sum 3.888 2.757 -8.477 9.725 Atomic orbital electron populations 1.21772 0.95730 1.01395 1.00158 1.20436 0.93264 0.93499 0.86875 0.95713 1.21984 0.95746 1.01058 0.98315 1.21401 0.96444 0.98795 0.97438 1.21844 0.97427 0.89580 0.95496 0.91469 1.59263 1.16797 1.13873 1.46807 1.22158 0.86126 0.97712 0.97416 1.44403 1.01732 1.65672 1.20757 1.20221 0.97740 1.42168 0.86835 0.91277 1.26248 1.04769 0.98834 0.91814 1.70907 1.17137 1.30853 1.37447 0.83717 0.74863 0.76673 0.74811 1.22435 1.21280 1.22891 0.92091 0.94264 0.92915 0.93019 0.91864 0.92575 0.92594 0.85550 0.83971 0.95821 0.91090 0.92771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.55 7.96 37.16 0.30 -2.25 16 2 C 0.17 3.33 3.48 -67.82 -0.24 3.09 16 3 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 4 C -0.13 -2.27 5.03 -26.83 -0.13 -2.40 16 5 C -0.10 -1.71 5.61 -26.69 -0.15 -1.86 16 6 C 0.07 1.29 3.71 -67.59 -0.25 1.04 16 7 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 8 N -0.84 -15.42 9.22 -4.57 -0.04 -15.46 16 9 C 0.09 2.02 3.81 -3.71 -0.01 2.01 16 10 N -0.60 -14.00 2.28 -165.03 -0.38 -14.38 16 11 C -0.34 -9.23 8.80 -15.06 -0.13 -9.36 16 12 H 0.07 1.99 6.52 -52.49 -0.34 1.65 16 13 C -0.02 -0.43 5.24 -17.43 -0.09 -0.53 16 14 N -0.92 -28.38 13.70 55.49 0.76 -27.62 16 15 Si 1.07 26.68 24.75 -169.99 -4.21 22.47 16 16 H -0.30 -7.02 6.61 56.52 0.37 -6.64 16 17 H -0.29 -6.95 6.79 56.52 0.38 -6.56 16 18 H -0.30 -7.69 7.11 56.52 0.40 -7.29 16 19 H 0.06 1.27 7.65 -51.93 -0.40 0.88 16 20 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 21 H 0.05 1.05 7.43 -51.93 -0.39 0.66 16 22 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 23 H 0.06 1.14 6.49 -51.93 -0.34 0.80 16 24 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 25 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.33 6.12 9.04 -39.29 -0.36 5.77 16 27 H 0.35 6.84 6.55 -39.29 -0.26 6.58 16 28 H 0.02 0.52 7.07 -51.93 -0.37 0.15 16 29 H 0.07 1.67 4.94 -51.93 -0.26 1.41 16 30 H 0.26 7.99 8.73 -40.82 -0.36 7.64 16 LS Contribution 227.36 15.07 3.43 3.43 Total: -1.00 -28.93 227.36 -5.58 -34.51 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -4.43 Total: 7.30 kcal Atomic # 6 Polarization: -9.54 SS G_CDS: -0.71 Total: -10.26 kcal Atomic # 7 Polarization: -57.80 SS G_CDS: 0.34 Total: -57.46 kcal Atomic # 14 Polarization: 26.68 SS G_CDS: -4.21 Total: 22.47 kcal Total LS contribution 3.43 Total: 3.43 kcal Total: -28.93 -5.58 -34.51 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575481403.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.050 kcal (2) G-P(sol) polarization free energy of solvation -28.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds