Wall clock time and date at job start Mon Mar 30 2020 02:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.69891 * 2 1 4 4 C 1.52762 * 109.50903 * 239.87689 * 2 1 3 5 5 C 1.53042 * 109.37765 * 185.70536 * 4 2 1 6 6 C 1.53042 * 109.53952 * 61.24478 * 5 4 2 7 7 H 1.08999 * 109.49514 * 178.68060 * 6 5 4 8 8 N 1.46900 * 109.52357 * 58.59755 * 6 5 4 9 9 C 1.53187 * 109.30750 * 298.63063 * 6 5 4 10 10 N 1.46927 * 108.78119 * 54.63797 * 9 6 5 11 11 C 1.36936 * 120.63374 * 126.36298 * 10 9 6 12 12 H 1.07996 * 120.00181 * 212.72415 * 11 10 9 13 13 C 1.38808 * 119.99801 * 32.72566 * 11 10 9 14 14 N 1.31621 * 119.99940 * 197.65008 * 13 11 10 15 15 Si 1.86802 * 120.00212 * 17.65712 * 13 11 10 16 16 H 1.48500 * 109.46842 * 269.99990 * 15 13 11 17 17 H 1.48497 * 109.47150 * 29.99308 * 15 13 11 18 18 H 1.48493 * 109.47188 * 149.99987 * 15 13 11 19 19 H 1.09001 * 109.47285 * 299.64652 * 1 2 3 20 20 H 1.09002 * 109.46826 * 59.64845 * 1 2 3 21 21 H 1.09002 * 109.46923 * 179.64821 * 1 2 3 22 22 H 1.09000 * 109.56316 * 65.66946 * 4 2 1 23 23 H 1.08995 * 109.38970 * 305.63205 * 4 2 1 24 24 H 1.09002 * 109.46453 * 301.21644 * 5 4 2 25 25 H 1.09002 * 109.44190 * 181.25718 * 5 4 2 26 26 H 1.00896 * 110.99826 * 180.14614 * 8 6 5 27 27 H 1.00896 * 110.99935 * 304.09986 * 8 6 5 28 28 H 1.09001 * 109.59111 * 294.84181 * 9 6 5 29 29 H 1.09004 * 109.58393 * 174.42420 * 9 6 5 30 30 H 0.96999 * 119.99991 * 355.08979 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0402 -0.7226 -1.2455 5 6 3.5638 -0.8462 -1.1725 6 6 3.9523 -1.6686 0.0584 7 1 5.0363 -1.7760 0.0968 8 7 3.3305 -2.9971 -0.0226 9 6 3.4644 -0.9518 1.3211 10 7 2.0225 -0.6994 1.1946 11 6 1.1535 -1.1133 2.1686 12 1 0.1527 -1.4210 1.9042 13 6 1.5592 -1.1374 3.4959 14 7 0.8828 -1.8422 4.3781 15 14 3.0650 -0.1696 4.0302 16 1 4.2729 -1.0241 3.9043 17 1 3.2147 1.0293 3.1668 18 1 2.9043 0.2553 5.4439 19 1 -0.3634 0.5083 0.8931 20 1 -0.3633 0.5193 -0.8868 21 1 -0.3633 -1.0277 -0.0063 22 1 1.7632 -0.1567 -2.1349 23 1 1.5964 -1.7170 -1.2941 24 1 4.0058 0.1475 -1.0995 25 1 3.9311 -1.3418 -2.0711 26 1 3.5706 -3.5582 0.7808 27 1 2.3296 -2.9221 -0.1253 28 1 3.9928 -0.0048 1.4311 29 1 3.6503 -1.5796 2.1926 30 1 0.0613 -2.2867 4.1167 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575481403.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:18 Heat of formation + Delta-G solvation = -11.607475 kcal Electronic energy + Delta-G solvation = -12216.242760 eV Core-core repulsion = 10238.501734 eV Total energy + Delta-G solvation = -1977.741026 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.10021 -35.63867 -34.48074 -32.49877 -30.60707 -27.59362 -26.21030 -24.15521 -21.84136 -20.55124 -18.95195 -17.40784 -16.55547 -16.28444 -15.43286 -15.19196 -15.11690 -14.74026 -13.95963 -13.58367 -13.32013 -13.13794 -12.72326 -12.35875 -12.17576 -11.84260 -11.65577 -11.50335 -11.29524 -10.97280 -10.61490 -9.66082 -8.98052 -8.36667 -5.53339 1.38152 1.51698 1.69357 2.51814 3.12417 3.33846 3.83311 4.01940 4.05341 4.17376 4.41863 4.55181 4.56809 4.71122 4.77819 4.86130 4.93813 5.07935 5.11815 5.24530 5.31248 5.41768 5.59732 5.89896 6.29280 6.35734 6.56945 6.95922 7.61460 8.14483 8.90736 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.040208 B = 0.019456 C = 0.016546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.217626 B = 1438.825907 C = 1691.856695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.156 3.844 3 H 0.031 0.969 4 C -0.123 4.123 5 C -0.099 4.099 6 C 0.073 3.927 7 H 0.088 0.912 8 N -0.832 5.832 9 C 0.087 3.913 10 N -0.613 5.613 11 C -0.312 4.312 12 H 0.042 0.958 13 C -0.072 4.072 14 N -0.963 5.963 15 Si 1.106 2.894 16 H -0.276 1.276 17 H -0.273 1.273 18 H -0.312 1.312 19 H 0.033 0.967 20 H 0.077 0.923 21 H 0.036 0.964 22 H 0.082 0.918 23 H 0.052 0.948 24 H 0.070 0.930 25 H 0.075 0.925 26 H 0.332 0.668 27 H 0.337 0.663 28 H 0.031 0.969 29 H 0.048 0.952 30 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.526 3.429 -10.910 12.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.051 3.949 3 H 0.049 0.951 4 C -0.162 4.162 5 C -0.137 4.137 6 C -0.041 4.041 7 H 0.106 0.894 8 N -0.360 5.360 9 C -0.039 4.039 10 N -0.339 5.339 11 C -0.442 4.442 12 H 0.060 0.940 13 C -0.266 4.266 14 N -0.607 5.607 15 Si 0.934 3.066 16 H -0.203 1.203 17 H -0.198 1.198 18 H -0.241 1.241 19 H 0.052 0.948 20 H 0.095 0.905 21 H 0.055 0.945 22 H 0.100 0.900 23 H 0.071 0.929 24 H 0.088 0.912 25 H 0.094 0.906 26 H 0.142 0.858 27 H 0.150 0.850 28 H 0.049 0.951 29 H 0.067 0.933 30 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 6.918 3.674 -10.336 12.969 hybrid contribution -1.978 -0.262 0.203 2.006 sum 4.940 3.412 -10.133 11.778 Atomic orbital electron populations 1.21706 0.95500 1.00547 1.00659 1.20701 0.93637 0.93821 0.86764 0.95126 1.21876 0.96239 1.00457 0.97618 1.21416 0.95819 0.99382 0.97110 1.21909 0.98476 0.89114 0.94600 0.89363 1.59306 1.16088 1.14031 1.46567 1.22257 0.85065 0.98044 0.98565 1.44521 1.02118 1.66328 1.20905 1.20079 0.97091 1.39426 0.87635 0.94025 1.27272 1.07164 0.99751 0.92459 1.71012 1.17690 1.33610 1.38369 0.83189 0.73262 0.76231 0.73933 1.20320 1.19817 1.24140 0.94817 0.90470 0.94467 0.89970 0.92895 0.91185 0.90612 0.85752 0.84967 0.95077 0.93326 0.94350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.67 7.96 71.98 0.57 -4.10 16 2 C 0.16 5.88 3.48 44.83 0.16 6.04 16 3 H 0.03 1.15 8.14 -2.39 -0.02 1.14 16 4 C -0.12 -3.76 5.03 30.53 0.15 -3.60 16 5 C -0.10 -2.85 5.61 30.62 0.17 -2.68 16 6 C 0.07 2.41 3.71 44.99 0.17 2.58 16 7 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 8 N -0.83 -28.83 9.22 -168.36 -1.55 -30.38 16 9 C 0.09 3.58 3.81 86.36 0.33 3.91 16 10 N -0.61 -27.76 2.28 -676.03 -1.54 -29.30 16 11 C -0.31 -17.08 8.80 84.03 0.74 -16.35 16 12 H 0.04 2.49 6.52 -2.91 -0.02 2.47 16 13 C -0.07 -4.18 5.24 84.86 0.45 -3.74 16 14 N -0.96 -61.07 13.70 21.65 0.30 -60.77 16 15 Si 1.11 53.91 24.75 68.60 1.70 55.61 16 16 H -0.28 -12.46 6.61 99.48 0.66 -11.80 16 17 H -0.27 -12.50 6.79 99.48 0.68 -11.83 16 18 H -0.31 -15.73 7.11 99.48 0.71 -15.02 16 19 H 0.03 1.39 7.65 -2.39 -0.02 1.37 16 20 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 21 H 0.04 1.46 7.43 -2.39 -0.02 1.44 16 22 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 23 H 0.05 1.75 6.49 -2.39 -0.02 1.73 16 24 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 25 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 26 H 0.33 11.72 9.04 -89.70 -0.81 10.91 16 27 H 0.34 12.82 6.55 -89.70 -0.59 12.24 16 28 H 0.03 1.25 7.07 -2.39 -0.02 1.23 16 29 H 0.05 2.21 4.94 -2.38 -0.01 2.20 16 30 H 0.25 15.79 8.73 -92.71 -0.81 14.98 16 Total: -1.00 -62.37 227.36 1.25 -61.12 By element: Atomic # 1 Polarization: 22.04 SS G_CDS: -0.38 Total: 21.65 kcal Atomic # 6 Polarization: -20.66 SS G_CDS: 2.73 Total: -17.93 kcal Atomic # 7 Polarization: -117.66 SS G_CDS: -2.80 Total: -120.45 kcal Atomic # 14 Polarization: 53.91 SS G_CDS: 1.70 Total: 55.61 kcal Total: -62.37 1.25 -61.12 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575481403.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.516 kcal (2) G-P(sol) polarization free energy of solvation -62.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds