Wall clock time and date at job start Mon Mar 30 2020 02:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 110.36574 * 2 1 4 4 C 1.54379 * 110.40784 * 237.52500 * 2 1 3 5 5 C 1.54257 * 105.05982 * 217.36744 * 4 2 1 6 6 H 1.08994 * 110.32740 * 241.10711 * 5 4 2 7 7 N 1.46906 * 110.32425 * 118.99981 * 5 4 2 8 8 C 1.54377 * 105.06196 * 0.02562 * 5 4 2 9 9 N 1.48558 * 110.40806 * 122.35360 * 2 1 3 10 10 C 1.46893 * 111.00057 * 277.81323 * 9 2 1 11 11 C 1.50706 * 109.47176 * 170.00138 * 10 9 2 12 12 H 1.07999 * 119.99515 * 0.02562 * 11 10 9 13 13 C 1.37870 * 120.00176 * 180.02562 * 11 10 9 14 14 N 1.31520 * 119.99883 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00043 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47288 * 59.99994 * 15 13 11 17 17 H 1.48503 * 109.47086 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.46819 * 299.99648 * 15 13 11 19 19 H 1.09002 * 109.47178 * 297.64586 * 1 2 3 20 20 H 1.09004 * 109.47240 * 57.64588 * 1 2 3 21 21 H 1.08992 * 109.47458 * 177.64496 * 1 2 3 22 22 H 1.09001 * 110.32793 * 336.26551 * 4 2 1 23 23 H 1.09002 * 110.32217 * 98.37099 * 4 2 1 24 24 H 1.00890 * 110.99881 * 180.02562 * 7 5 4 25 25 H 1.00898 * 110.99783 * 303.95741 * 7 5 4 26 26 H 1.09005 * 110.41050 * 265.07534 * 8 5 4 27 27 H 1.08995 * 110.41769 * 142.63097 * 8 5 4 28 28 H 1.09001 * 109.46739 * 50.00547 * 10 9 2 29 29 H 1.09000 * 109.47767 * 290.00806 * 10 9 2 30 30 H 0.97004 * 119.99507 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0218 0.0000 4 6 2.0684 -0.7769 -1.2206 5 6 3.3177 -1.5196 -0.7039 6 1 4.2040 -1.1936 -1.2480 7 7 3.1412 -2.9716 -0.8409 8 6 3.4288 -1.1296 0.7857 9 7 2.0481 -0.7451 1.1762 10 6 2.0569 0.1038 2.3750 11 6 2.3503 -0.7420 3.5873 12 1 2.5142 -1.8039 3.4780 13 6 2.4094 -0.1602 4.8359 14 7 2.2093 1.1328 4.9689 15 14 2.7738 -1.2085 6.3385 16 1 4.1012 -1.8552 6.1808 17 1 2.7826 -0.3503 7.5504 18 1 1.7276 -2.2531 6.4786 19 1 -0.3634 0.4768 0.9104 20 1 -0.3634 0.5500 -0.8681 21 1 -0.3634 -1.0267 -0.0422 22 1 1.3235 -1.4897 -1.5744 23 1 2.3398 -0.0864 -2.0192 24 1 3.9530 -3.4677 -0.5052 25 1 2.3066 -3.2808 -0.3657 26 1 4.1069 -0.2849 0.9079 27 1 3.7686 -1.9797 1.3770 28 1 1.0829 0.5791 2.4907 29 1 2.8252 0.8701 2.2720 30 1 2.2513 1.5422 5.8474 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575588044.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:42 Heat of formation + Delta-G solvation = -5.700861 kcal Electronic energy + Delta-G solvation = -11592.226579 eV Core-core repulsion = 9614.741683 eV Total energy + Delta-G solvation = -1977.484896 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.65601 -33.84967 -32.60152 -30.83162 -28.31313 -26.23532 -24.67995 -22.10709 -19.87346 -19.47465 -16.29365 -15.91242 -14.79886 -14.67899 -14.27748 -13.75935 -13.15146 -12.73519 -12.22434 -11.69521 -11.46187 -11.42529 -11.13222 -10.85567 -10.74211 -10.55543 -10.35253 -10.19450 -9.82027 -9.21624 -8.48692 -8.30219 -7.42094 -6.03854 -4.05361 3.31785 3.35792 3.38718 4.41047 4.87578 4.90178 5.22526 5.29988 5.35600 5.61593 5.73151 5.90593 6.01169 6.13680 6.23356 6.38184 6.42235 6.52548 6.64156 6.76470 7.13808 7.28949 7.47973 7.73009 7.79483 8.00489 8.16255 8.50539 9.01774 9.58810 11.07063 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.050156 B = 0.011512 C = 0.010111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.126056 B = 2431.604919 C = 2768.706374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.050 3.950 3 H 0.041 0.959 4 C -0.112 4.112 5 C 0.082 3.918 6 H 0.075 0.925 7 N -0.840 5.840 8 C 0.013 3.987 9 N -0.501 5.501 10 C 0.183 3.817 11 C -0.506 4.506 12 H 0.060 0.940 13 C 0.055 3.945 14 N -0.899 5.899 15 Si 0.898 3.102 16 H -0.278 1.278 17 H -0.288 1.288 18 H -0.276 1.276 19 H 0.057 0.943 20 H 0.047 0.953 21 H 0.057 0.943 22 H 0.075 0.925 23 H 0.061 0.939 24 H 0.335 0.665 25 H 0.346 0.654 26 H 0.036 0.964 27 H 0.073 0.927 28 H 0.031 0.969 29 H -0.008 1.008 30 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.503 -3.433 -9.065 9.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.059 4.059 3 H 0.059 0.941 4 C -0.150 4.150 5 C -0.030 4.030 6 H 0.094 0.906 7 N -0.368 5.368 8 C -0.118 4.118 9 N -0.226 5.226 10 C 0.057 3.943 11 C -0.544 4.544 12 H 0.078 0.922 13 C -0.147 4.147 14 N -0.539 5.539 15 Si 0.726 3.274 16 H -0.204 1.204 17 H -0.213 1.213 18 H -0.202 1.202 19 H 0.076 0.924 20 H 0.066 0.934 21 H 0.076 0.924 22 H 0.094 0.906 23 H 0.080 0.920 24 H 0.146 0.854 25 H 0.159 0.841 26 H 0.055 0.945 27 H 0.092 0.908 28 H 0.049 0.951 29 H 0.010 0.990 30 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.102 -3.597 -9.575 10.229 hybrid contribution 0.851 0.382 1.939 2.151 sum 0.953 -3.215 -7.636 8.340 Atomic orbital electron populations 1.21648 0.94533 1.01719 1.00882 1.22624 0.95913 0.95794 0.91575 0.94121 1.22416 0.97175 0.98536 0.96872 1.22238 0.97801 0.88429 0.94537 0.90647 1.59099 1.08426 1.04249 1.65068 1.23761 0.92303 1.00648 0.95076 1.65431 1.15897 1.38513 1.02774 1.19880 0.96619 0.91307 0.86487 1.21075 1.47578 0.94826 0.90939 0.92194 1.24995 0.95569 0.95008 0.99084 1.69953 1.50198 1.09944 1.23799 0.86555 0.78830 0.80093 0.81889 1.20351 1.21321 1.20152 0.92405 0.93445 0.92369 0.90613 0.92011 0.85352 0.84075 0.94537 0.90818 0.95103 0.99046 0.92874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.18 9.36 37.16 0.35 -1.84 16 2 C 0.05 0.92 2.88 -66.07 -0.19 0.73 16 3 H 0.04 0.78 7.99 -51.93 -0.42 0.37 16 4 C -0.11 -1.72 6.29 -25.35 -0.16 -1.88 16 5 C 0.08 1.29 4.19 -66.33 -0.28 1.01 16 6 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 7 N -0.84 -11.95 9.16 -3.50 -0.03 -11.98 16 8 C 0.01 0.24 5.82 -2.19 -0.01 0.23 16 9 N -0.50 -10.88 5.01 -223.58 -1.12 -12.00 16 10 C 0.18 4.84 4.54 -4.98 -0.02 4.82 16 11 C -0.51 -14.43 8.97 -34.44 -0.31 -14.74 16 12 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 13 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 14 N -0.90 -27.03 13.29 55.43 0.74 -26.29 16 15 Si 0.90 21.87 29.54 -169.99 -5.02 16.85 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 H 0.06 1.07 7.28 -51.93 -0.38 0.69 16 20 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 21 H 0.06 0.95 8.09 -51.93 -0.42 0.53 16 22 H 0.08 1.14 7.62 -51.93 -0.40 0.74 16 23 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 24 H 0.33 4.27 9.08 -39.30 -0.36 3.91 16 25 H 0.35 5.14 8.98 -39.29 -0.35 4.79 16 26 H 0.04 0.75 7.75 -51.93 -0.40 0.34 16 27 H 0.07 1.47 8.06 -51.93 -0.42 1.05 16 28 H 0.03 0.87 7.16 -51.93 -0.37 0.50 16 29 H -0.01 -0.23 7.77 -51.93 -0.40 -0.64 16 30 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 246.14 15.07 3.71 3.71 Total: -1.00 -29.69 246.14 -7.18 -36.86 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -4.73 Total: 3.04 kcal Atomic # 6 Polarization: -9.47 SS G_CDS: -0.72 Total: -10.19 kcal Atomic # 7 Polarization: -49.85 SS G_CDS: -0.42 Total: -50.27 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -29.69 -7.18 -36.86 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575588044.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.163 kcal (2) G-P(sol) polarization free energy of solvation -29.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds