Wall clock time and date at job start Mon Mar 30 2020 02:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 110.36574 * 2 1 4 4 C 1.54379 * 110.40784 * 237.52500 * 2 1 3 5 5 C 1.54257 * 105.05982 * 217.36744 * 4 2 1 6 6 H 1.08994 * 110.32740 * 241.10711 * 5 4 2 7 7 N 1.46906 * 110.32425 * 118.99981 * 5 4 2 8 8 C 1.54377 * 105.06196 * 0.02562 * 5 4 2 9 9 N 1.48558 * 110.40806 * 122.35360 * 2 1 3 10 10 C 1.46893 * 111.00057 * 277.81323 * 9 2 1 11 11 C 1.50706 * 109.47176 * 170.00138 * 10 9 2 12 12 H 1.07999 * 119.99515 * 0.02562 * 11 10 9 13 13 C 1.37870 * 120.00176 * 180.02562 * 11 10 9 14 14 N 1.31520 * 119.99883 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00043 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47288 * 59.99994 * 15 13 11 17 17 H 1.48503 * 109.47086 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.46819 * 299.99648 * 15 13 11 19 19 H 1.09002 * 109.47178 * 297.64586 * 1 2 3 20 20 H 1.09004 * 109.47240 * 57.64588 * 1 2 3 21 21 H 1.08992 * 109.47458 * 177.64496 * 1 2 3 22 22 H 1.09001 * 110.32793 * 336.26551 * 4 2 1 23 23 H 1.09002 * 110.32217 * 98.37099 * 4 2 1 24 24 H 1.00890 * 110.99881 * 180.02562 * 7 5 4 25 25 H 1.00898 * 110.99783 * 303.95741 * 7 5 4 26 26 H 1.09005 * 110.41050 * 265.07534 * 8 5 4 27 27 H 1.08995 * 110.41769 * 142.63097 * 8 5 4 28 28 H 1.09001 * 109.46739 * 50.00547 * 10 9 2 29 29 H 1.09000 * 109.47767 * 290.00806 * 10 9 2 30 30 H 0.97004 * 119.99507 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0218 0.0000 4 6 2.0684 -0.7769 -1.2206 5 6 3.3177 -1.5196 -0.7039 6 1 4.2040 -1.1936 -1.2480 7 7 3.1412 -2.9716 -0.8409 8 6 3.4288 -1.1296 0.7857 9 7 2.0481 -0.7451 1.1762 10 6 2.0569 0.1038 2.3750 11 6 2.3503 -0.7420 3.5873 12 1 2.5142 -1.8039 3.4780 13 6 2.4094 -0.1602 4.8359 14 7 2.2093 1.1328 4.9689 15 14 2.7738 -1.2085 6.3385 16 1 4.1012 -1.8552 6.1808 17 1 2.7826 -0.3503 7.5504 18 1 1.7276 -2.2531 6.4786 19 1 -0.3634 0.4768 0.9104 20 1 -0.3634 0.5500 -0.8681 21 1 -0.3634 -1.0267 -0.0422 22 1 1.3235 -1.4897 -1.5744 23 1 2.3398 -0.0864 -2.0192 24 1 3.9530 -3.4677 -0.5052 25 1 2.3066 -3.2808 -0.3657 26 1 4.1069 -0.2849 0.9079 27 1 3.7686 -1.9797 1.3770 28 1 1.0829 0.5791 2.4907 29 1 2.8252 0.8701 2.2720 30 1 2.2513 1.5422 5.8474 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575588044.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:42 Heat of formation + Delta-G solvation = -28.577743 kcal Electronic energy + Delta-G solvation = -11593.218595 eV Core-core repulsion = 9614.741683 eV Total energy + Delta-G solvation = -1978.476912 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.17593 -35.60073 -34.37295 -32.51555 -29.79699 -28.08578 -26.24548 -24.04266 -21.30555 -21.02656 -18.45405 -17.39305 -16.51758 -16.13698 -15.89509 -15.38518 -14.81714 -14.33870 -14.06575 -13.22900 -13.14579 -12.96901 -12.85753 -12.59291 -12.40888 -12.19245 -11.92716 -11.80878 -11.50571 -11.27348 -10.65399 -9.59535 -9.22137 -8.24850 -6.35862 1.37087 1.40592 1.48702 2.36438 3.07100 3.33136 3.59485 3.86408 3.95882 4.22474 4.39647 4.51712 4.59094 4.75144 4.80727 4.92153 5.01748 5.06998 5.11248 5.27009 5.29060 5.37697 5.60840 5.99458 6.20781 6.27209 6.48995 6.65487 6.79428 7.34198 8.86229 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.050156 B = 0.011512 C = 0.010111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.126056 B = 2431.604919 C = 2768.706374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.042 3.958 3 H 0.027 0.973 4 C -0.101 4.101 5 C 0.094 3.906 6 H 0.095 0.905 7 N -0.831 5.831 8 C 0.011 3.989 9 N -0.509 5.509 10 C 0.200 3.800 11 C -0.525 4.525 12 H 0.059 0.941 13 C 0.000 4.000 14 N -0.935 5.935 15 Si 0.971 3.029 16 H -0.268 1.268 17 H -0.281 1.281 18 H -0.267 1.267 19 H 0.029 0.971 20 H 0.080 0.920 21 H 0.063 0.937 22 H 0.086 0.914 23 H 0.087 0.913 24 H 0.345 0.655 25 H 0.344 0.656 26 H 0.018 0.982 27 H 0.064 0.936 28 H 0.003 0.997 29 H -0.042 1.042 30 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.717 -4.817 -9.980 11.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.067 4.067 3 H 0.045 0.955 4 C -0.139 4.139 5 C -0.019 4.019 6 H 0.113 0.887 7 N -0.360 5.360 8 C -0.120 4.120 9 N -0.233 5.233 10 C 0.073 3.927 11 C -0.563 4.563 12 H 0.077 0.923 13 C -0.198 4.198 14 N -0.575 5.575 15 Si 0.795 3.205 16 H -0.193 1.193 17 H -0.207 1.207 18 H -0.192 1.192 19 H 0.048 0.952 20 H 0.099 0.901 21 H 0.082 0.918 22 H 0.105 0.895 23 H 0.105 0.895 24 H 0.158 0.842 25 H 0.157 0.843 26 H 0.037 0.963 27 H 0.082 0.918 28 H 0.021 0.979 29 H -0.024 1.024 30 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.321 -4.999 -10.515 11.647 hybrid contribution 0.779 0.838 2.181 2.463 sum 1.100 -4.161 -8.334 9.380 Atomic orbital electron populations 1.21624 0.93371 1.02259 1.00986 1.22805 0.96955 0.95319 0.91604 0.95483 1.22384 0.97008 0.98737 0.95759 1.22191 0.98860 0.89345 0.91485 0.88663 1.59118 1.08870 1.03289 1.64685 1.23855 0.90554 0.99507 0.98074 1.65349 1.17603 1.37735 1.02620 1.19499 0.93756 0.90812 0.88641 1.21388 1.47877 0.94956 0.92088 0.92276 1.25954 0.95023 0.96299 1.02480 1.70088 1.50881 1.11801 1.24760 0.85409 0.79101 0.78353 0.77595 1.19257 1.20665 1.19212 0.95203 0.90144 0.91831 0.89506 0.89460 0.84247 0.84322 0.96349 0.91772 0.97891 1.02387 0.92620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.08 9.36 71.98 0.67 -3.41 16 2 C 0.04 1.51 2.88 45.06 0.13 1.64 16 3 H 0.03 1.05 7.99 -2.39 -0.02 1.03 16 4 C -0.10 -2.81 6.29 31.49 0.20 -2.61 16 5 C 0.09 2.72 4.19 45.81 0.19 2.91 16 6 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 7 N -0.83 -21.36 9.16 -164.97 -1.51 -22.87 16 8 C 0.01 0.41 5.82 86.45 0.50 0.91 16 9 N -0.51 -22.35 5.01 -861.29 -4.31 -26.66 16 10 C 0.20 11.04 4.54 85.56 0.39 11.43 16 11 C -0.52 -30.61 8.97 25.60 0.23 -30.38 16 12 H 0.06 3.38 7.81 -2.91 -0.02 3.36 16 13 C 0.00 0.02 5.46 84.65 0.46 0.49 16 14 N -0.93 -57.44 13.29 21.45 0.28 -57.15 16 15 Si 0.97 44.94 29.54 68.60 2.03 46.96 16 16 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 17 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 18 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 19 H 0.03 1.11 7.28 -2.39 -0.02 1.10 16 20 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 21 H 0.06 1.99 8.09 -2.39 -0.02 1.97 16 22 H 0.09 2.29 7.62 -2.39 -0.02 2.27 16 23 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 24 H 0.34 7.89 9.08 -89.70 -0.81 7.08 16 25 H 0.34 9.37 8.98 -89.70 -0.81 8.56 16 26 H 0.02 0.76 7.75 -2.38 -0.02 0.74 16 27 H 0.06 2.55 8.06 -2.39 -0.02 2.54 16 28 H 0.00 0.18 7.16 -2.39 -0.02 0.16 16 29 H -0.04 -2.51 7.77 -2.39 -0.02 -2.53 16 30 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -64.55 246.14 -1.23 -65.78 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -0.50 Total: 12.97 kcal Atomic # 6 Polarization: -21.80 SS G_CDS: 2.78 Total: -19.03 kcal Atomic # 7 Polarization: -101.15 SS G_CDS: -5.54 Total: -106.69 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.96 kcal Total: -64.55 -1.23 -65.78 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575588044.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.205 kcal (2) G-P(sol) polarization free energy of solvation -64.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds