Wall clock time and date at job start Mon Mar 30 2020 02:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 110.78241 * 2 1 4 4 C 1.54323 * 110.72055 * 123.24243 * 2 1 3 5 5 N 1.47023 * 107.27391 * 140.55589 * 4 2 1 6 6 C 1.36934 * 125.64773 * 181.01975 * 5 4 2 7 7 H 1.07994 * 120.00034 * 13.67723 * 6 5 4 8 8 C 1.38811 * 119.99843 * 193.67057 * 6 5 4 9 9 N 1.31619 * 120.00362 * 204.21540 * 8 6 5 10 10 Si 1.86808 * 119.99989 * 23.94481 * 8 6 5 11 11 H 1.48503 * 109.46688 * 270.27406 * 10 8 6 12 12 H 1.48493 * 109.47020 * 30.26957 * 10 8 6 13 13 H 1.48500 * 109.47115 * 150.27303 * 10 8 6 14 14 C 1.47421 * 108.70138 * 1.28822 * 5 4 2 15 15 C 1.55133 * 104.72251 * 335.54938 * 14 5 4 16 16 H 1.08997 * 111.19734 * 279.19300 * 15 14 5 17 17 N 1.46908 * 110.90660 * 155.27717 * 15 14 5 18 18 H 1.08997 * 109.46945 * 298.21319 * 1 2 3 19 19 H 1.08998 * 109.46949 * 58.21525 * 1 2 3 20 20 H 1.09001 * 109.46784 * 178.21319 * 1 2 3 21 21 H 1.08995 * 109.47135 * 181.78589 * 3 2 1 22 22 H 1.09003 * 109.46661 * 301.78640 * 3 2 1 23 23 H 1.09000 * 109.46847 * 61.78473 * 3 2 1 24 24 H 1.09001 * 109.88502 * 21.13761 * 4 2 1 25 25 H 1.09004 * 109.87982 * 259.97424 * 4 2 1 26 26 H 0.97003 * 119.99291 * 354.29123 * 9 8 6 27 27 H 1.08999 * 110.37260 * 94.48030 * 14 5 4 28 28 H 1.09000 * 110.36834 * 216.80581 * 14 5 4 29 29 H 1.00898 * 110.99906 * 67.97385 * 17 15 14 30 30 H 1.00894 * 110.99727 * 191.93461 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0729 1.4305 0.0000 4 6 2.0760 -0.7913 1.2072 5 7 3.2445 -1.5508 0.7389 6 6 4.0043 -2.3970 1.5017 7 1 3.6449 -2.7242 2.4661 8 6 5.2365 -2.8342 1.0353 9 7 5.7472 -3.9618 1.4827 10 14 6.1664 -1.8261 -0.2330 11 1 5.7689 -2.2583 -1.5969 12 1 5.8430 -0.3876 -0.0557 13 1 7.6263 -2.0309 -0.0544 14 6 3.4666 -1.2455 -0.6861 15 6 2.0790 -0.7955 -1.2138 16 1 1.4452 -1.6535 -1.4376 17 7 2.2219 0.0720 -2.3908 18 1 -0.3633 0.4858 0.9056 19 1 -0.3633 0.5413 -0.8735 20 1 -0.3633 -1.0272 -0.0320 21 1 3.1621 1.4057 -0.0320 22 1 1.6957 1.9622 -0.8736 23 1 1.7476 1.9425 0.9056 24 1 1.3130 -1.4759 1.5775 25 1 2.3741 -0.1024 1.9977 26 1 5.3039 -4.4450 2.1975 27 1 4.1947 -0.4414 -0.7929 28 1 3.8032 -2.1361 -1.2169 29 1 2.5789 -0.4453 -3.1800 30 1 1.3469 0.5202 -2.6179 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000642875993.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:38 Heat of formation + Delta-G solvation = 18.223519 kcal Electronic energy + Delta-G solvation = -11988.140504 eV Core-core repulsion = 10011.693047 eV Total energy + Delta-G solvation = -1976.447457 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.80136 -33.90991 -32.31114 -31.22185 -27.06927 -26.84304 -25.81390 -22.37307 -20.48899 -18.44299 -17.19246 -15.51002 -15.13989 -14.91680 -13.72477 -13.65776 -13.22218 -12.84278 -12.66064 -12.29426 -11.78589 -11.39209 -11.34005 -10.97434 -10.54891 -10.42002 -10.09481 -9.71062 -9.52109 -9.15637 -8.48429 -8.34585 -6.98806 -6.25440 -3.14083 3.48327 3.59838 3.74479 4.65167 4.70524 4.95515 5.15642 5.27675 5.39898 5.61061 5.72840 5.84986 5.93665 5.98119 6.13109 6.23237 6.31286 6.54982 6.58517 6.62773 6.75452 6.82107 6.94028 7.46480 7.68983 7.80872 8.40949 9.10790 9.66339 10.34707 11.22043 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.051547 B = 0.015817 C = 0.013756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.063449 B = 1769.796070 C = 2034.992333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.076 4.076 3 C -0.116 4.116 4 C 0.144 3.856 5 N -0.609 5.609 6 C -0.325 4.325 7 H 0.074 0.926 8 C -0.022 4.022 9 N -0.924 5.924 10 Si 1.067 2.933 11 H -0.295 1.295 12 H -0.285 1.285 13 H -0.300 1.300 14 C 0.117 3.883 15 C 0.081 3.919 16 H 0.044 0.956 17 N -0.837 5.837 18 H 0.054 0.946 19 H 0.049 0.951 20 H 0.052 0.948 21 H 0.059 0.941 22 H 0.054 0.946 23 H 0.042 0.958 24 H 0.026 0.974 25 H 0.028 0.972 26 H 0.261 0.739 27 H 0.043 0.957 28 H 0.052 0.948 29 H 0.338 0.662 30 H 0.335 0.665 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.147 8.791 -6.174 14.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.076 4.076 3 C -0.173 4.173 4 C 0.018 3.982 5 N -0.336 5.336 6 C -0.452 4.452 7 H 0.092 0.908 8 C -0.222 4.222 9 N -0.565 5.565 10 Si 0.899 3.101 11 H -0.223 1.223 12 H -0.212 1.212 13 H -0.228 1.228 14 C -0.009 4.009 15 C -0.031 4.031 16 H 0.062 0.938 17 N -0.367 5.367 18 H 0.074 0.926 19 H 0.068 0.932 20 H 0.071 0.929 21 H 0.078 0.922 22 H 0.073 0.927 23 H 0.062 0.938 24 H 0.044 0.956 25 H 0.046 0.954 26 H 0.072 0.928 27 H 0.061 0.939 28 H 0.070 0.930 29 H 0.150 0.850 30 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -7.222 9.141 -6.586 13.382 hybrid contribution -2.094 -0.692 0.582 2.281 sum -9.316 8.449 -6.004 13.937 Atomic orbital electron populations 1.21779 0.94862 1.01334 1.01161 1.21627 0.94330 0.96113 0.95576 1.21526 1.01729 0.94029 1.00016 1.21439 0.90141 0.92791 0.93872 1.44697 1.32371 1.51447 1.05089 1.20049 0.99686 1.22051 1.03426 0.90777 1.25894 0.94695 0.97861 1.03751 1.70916 1.45950 1.11677 1.28001 0.83817 0.75457 0.75730 0.75084 1.22314 1.21185 1.22837 1.22004 0.94311 0.98323 0.86239 1.22633 0.97815 0.92930 0.89719 0.93824 1.58642 1.33878 1.36249 1.07901 0.92648 0.93167 0.92853 0.92161 0.92712 0.93849 0.95580 0.95442 0.92835 0.93939 0.93011 0.84973 0.85274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.83 8.49 37.16 0.32 -1.51 16 2 C -0.08 -1.29 0.82 -152.67 -0.12 -1.41 16 3 C -0.12 -1.85 7.87 37.16 0.29 -1.56 16 4 C 0.14 3.08 6.42 -3.06 -0.02 3.06 16 5 N -0.61 -15.69 3.26 -169.93 -0.55 -16.24 16 6 C -0.32 -9.67 10.45 -15.06 -0.16 -9.83 16 7 H 0.07 2.32 8.06 -52.49 -0.42 1.89 16 8 C -0.02 -0.67 5.43 -17.43 -0.09 -0.76 16 9 N -0.92 -29.69 13.70 55.49 0.76 -28.93 16 10 Si 1.07 27.88 24.68 -169.99 -4.20 23.69 16 11 H -0.30 -7.31 6.61 56.52 0.37 -6.94 16 12 H -0.29 -7.19 6.20 56.52 0.35 -6.84 16 13 H -0.30 -7.89 7.11 56.52 0.40 -7.49 16 14 C 0.12 2.69 4.07 -2.41 -0.01 2.68 16 15 C 0.08 1.45 3.45 -65.44 -0.23 1.23 16 16 H 0.04 0.79 8.04 -51.93 -0.42 0.37 16 17 N -0.84 -12.06 8.19 -2.74 -0.02 -12.08 16 18 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 19 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 20 H 0.05 0.74 8.13 -51.93 -0.42 0.32 16 21 H 0.06 1.12 7.42 -51.93 -0.39 0.73 16 22 H 0.05 0.77 7.49 -51.93 -0.39 0.38 16 23 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 24 H 0.03 0.56 7.82 -51.93 -0.41 0.15 16 25 H 0.03 0.60 7.84 -51.93 -0.41 0.19 16 26 H 0.26 8.29 8.73 -40.82 -0.36 7.94 16 27 H 0.04 1.03 5.10 -51.93 -0.26 0.76 16 28 H 0.05 1.27 6.25 -51.93 -0.32 0.94 16 29 H 0.34 4.41 9.08 -39.29 -0.36 4.06 16 30 H 0.33 3.96 8.82 -39.29 -0.35 3.61 16 LS Contribution 233.95 15.07 3.53 3.53 Total: -1.00 -32.25 233.95 -5.15 -37.40 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: -4.64 Total: 0.74 kcal Atomic # 6 Polarization: -8.09 SS G_CDS: -0.02 Total: -8.11 kcal Atomic # 7 Polarization: -57.44 SS G_CDS: 0.18 Total: -57.25 kcal Atomic # 14 Polarization: 27.88 SS G_CDS: -4.20 Total: 23.69 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -32.25 -5.15 -37.40 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642875993.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.628 kcal (2) G-P(sol) polarization free energy of solvation -32.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds