Wall clock time and date at job start Mon Mar 30 2020 02:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86801 * 120.00078 * 2 1 4 4 H 1.48504 * 109.46718 * 85.02316 * 3 2 1 5 5 H 1.48500 * 109.46954 * 205.01505 * 3 2 1 6 6 H 1.48490 * 109.47183 * 325.02009 * 3 2 1 7 7 C 1.38815 * 119.99593 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99584 * 189.06236 * 7 2 1 9 9 N 1.36937 * 120.00175 * 9.06633 * 7 2 1 10 10 C 1.47424 * 125.64656 * 10.44359 * 9 7 2 11 11 C 1.55128 * 104.71974 * 155.81923 * 10 9 7 12 12 C 1.55153 * 101.49159 * 37.29017 * 11 10 9 13 13 H 1.09002 * 110.87064 * 82.76306 * 12 11 10 14 14 C 1.52993 * 110.72489 * 205.96781 * 12 11 10 15 15 C 1.52997 * 109.47278 * 179.97438 * 14 12 11 16 16 N 1.46897 * 109.47119 * 180.02562 * 15 14 12 17 17 C 1.47015 * 125.64828 * 190.75045 * 9 7 2 18 18 H 0.96998 * 119.99557 * 359.97438 * 1 2 3 19 19 H 1.08997 * 110.36449 * 274.74470 * 10 9 7 20 20 H 1.08993 * 110.36828 * 37.06762 * 10 9 7 21 21 H 1.09009 * 111.19181 * 279.18587 * 11 10 9 22 22 H 1.09004 * 110.93956 * 155.29132 * 11 10 9 23 23 H 1.08996 * 109.47387 * 299.97983 * 14 12 11 24 24 H 1.09004 * 109.46818 * 59.97993 * 14 12 11 25 25 H 1.09003 * 109.46670 * 299.99960 * 15 14 12 26 26 H 1.08997 * 109.47500 * 59.99975 * 15 14 12 27 27 H 1.00903 * 110.99887 * 179.97438 * 16 15 14 28 28 H 1.00898 * 111.00205 * 303.95618 * 16 15 14 29 29 H 1.09005 * 109.88641 * 300.43832 * 17 9 7 30 30 H 1.08997 * 109.88645 * 61.44963 * 17 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3925 2.1071 1.3949 5 1 3.5965 1.4120 -0.5920 6 1 1.5044 2.6199 -0.8026 7 6 2.0102 -1.2022 -0.0005 8 1 3.0801 -1.2081 0.1468 9 7 1.3383 -2.3806 -0.1879 10 6 -0.0675 -2.5099 -0.6125 11 6 -0.1554 -3.9160 -1.2619 12 6 0.7880 -4.7391 -0.3457 13 1 0.2666 -5.0683 0.5532 14 6 1.3681 -5.9362 -1.1015 15 6 2.2928 -6.7261 -0.1733 16 7 2.8502 -7.8751 -0.8993 17 6 1.8976 -3.7262 0.0071 18 1 -0.4849 0.8401 0.0004 19 1 -0.7315 -2.4454 0.2494 20 1 -0.3158 -1.7393 -1.3422 21 1 0.2125 -3.8999 -2.2879 22 1 -1.1743 -4.3012 -1.2205 23 1 0.5564 -6.5802 -1.4399 24 1 1.9343 -5.5821 -1.9631 25 1 3.1045 -6.0820 0.1649 26 1 1.7268 -7.0801 0.6883 27 1 3.4653 -8.4130 -0.3073 28 1 2.1160 -8.4536 -1.2791 29 1 2.7542 -3.8707 -0.6513 30 1 2.2028 -3.8539 1.0456 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000642878762.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:45 Heat of formation + Delta-G solvation = -13.317065 kcal Electronic energy + Delta-G solvation = -11423.264578 eV Core-core repulsion = 9445.449419 eV Total energy + Delta-G solvation = -1977.815159 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.50115 -36.36347 -34.43865 -31.93435 -30.34293 -27.65934 -26.02724 -23.13371 -21.91357 -20.75061 -18.84866 -17.28096 -16.71863 -16.16317 -15.86000 -15.39118 -14.58697 -14.26598 -13.99926 -13.52842 -13.18045 -12.87846 -12.76928 -12.59445 -12.27337 -11.97469 -11.79760 -11.44000 -11.35454 -11.28595 -10.68334 -9.56437 -8.85965 -7.89662 -5.24652 1.44247 1.46375 1.56448 2.48896 3.28815 3.58635 3.77047 3.85111 4.06833 4.25912 4.38185 4.47369 4.69764 4.71074 4.76041 4.95187 5.06386 5.12015 5.24098 5.31974 5.43852 5.54333 5.62004 5.74399 6.20409 6.27746 6.67815 7.07690 7.76304 8.43698 9.22730 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.074081 B = 0.009469 C = 0.008656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 377.873146 B = 2956.176915 C = 3233.908553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.066 4.066 3 Si 0.980 3.020 4 H -0.285 1.285 5 H -0.269 1.269 6 H -0.290 1.290 7 C -0.249 4.249 8 H 0.077 0.923 9 N -0.630 5.630 10 C 0.175 3.825 11 C -0.126 4.126 12 C -0.085 4.085 13 H 0.078 0.922 14 C -0.092 4.092 15 C 0.063 3.937 16 N -0.858 5.858 17 C 0.137 3.863 18 H 0.249 0.751 19 H -0.004 1.004 20 H 0.030 0.970 21 H 0.065 0.935 22 H 0.086 0.914 23 H 0.079 0.921 24 H 0.057 0.943 25 H 0.058 0.942 26 H 0.035 0.965 27 H 0.350 0.650 28 H 0.348 0.652 29 H 0.025 0.975 30 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.768 -12.882 -1.343 13.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.259 4.259 3 Si 0.808 3.192 4 H -0.211 1.211 5 H -0.193 1.193 6 H -0.217 1.217 7 C -0.378 4.378 8 H 0.095 0.905 9 N -0.356 5.356 10 C 0.050 3.950 11 C -0.164 4.164 12 C -0.105 4.105 13 H 0.096 0.904 14 C -0.130 4.130 15 C -0.068 4.068 16 N -0.390 5.390 17 C 0.012 3.988 18 H 0.058 0.942 19 H 0.014 0.986 20 H 0.049 0.951 21 H 0.083 0.917 22 H 0.104 0.896 23 H 0.098 0.902 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.053 0.947 27 H 0.163 0.837 28 H 0.161 0.839 29 H 0.043 0.957 30 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges 2.079 -12.142 -1.807 12.451 hybrid contribution -0.232 0.705 0.969 1.221 sum 1.847 -11.437 -0.838 11.615 Atomic orbital electron populations 1.70173 1.06476 1.25550 1.57677 1.25722 0.96578 1.01275 1.02347 0.85044 0.77816 0.78913 0.77450 1.21142 1.19343 1.21658 1.19451 0.91557 0.84390 1.42399 0.90534 1.44882 1.10235 1.01218 1.79260 1.21261 0.84786 0.93863 0.95107 1.22940 0.99752 0.95224 0.98521 1.22061 0.95567 0.94230 0.98626 0.90393 1.21417 0.98636 0.95095 0.97859 1.21730 0.97335 0.92855 0.94835 1.58656 1.24930 1.13581 1.41800 1.21535 0.95689 0.84805 0.96808 0.94211 0.98579 0.95125 0.91676 0.89578 0.90226 0.92428 0.92300 0.94698 0.83725 0.83892 0.95734 0.96845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.11 10.68 21.65 0.23 -58.88 16 2 C -0.07 -3.91 5.40 84.86 0.46 -3.45 16 3 Si 0.98 47.06 29.56 68.60 2.03 49.09 16 4 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 5 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 6 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 7 C -0.25 -14.72 10.24 84.03 0.86 -13.86 16 8 H 0.08 4.36 7.84 -2.91 -0.02 4.34 16 9 N -0.63 -34.39 3.39 -691.58 -2.35 -36.74 16 10 C 0.17 9.02 5.43 86.93 0.47 9.49 16 11 C -0.13 -4.73 6.54 32.06 0.21 -4.52 16 12 C -0.09 -2.91 2.98 -9.61 -0.03 -2.94 16 13 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 14 C -0.09 -2.45 4.86 30.59 0.15 -2.30 16 15 C 0.06 1.50 6.63 86.30 0.57 2.07 16 16 N -0.86 -16.94 9.62 -186.73 -1.80 -18.74 16 17 C 0.14 5.93 5.99 86.73 0.52 6.45 16 18 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 19 H 0.00 -0.21 8.07 -2.39 -0.02 -0.23 16 20 H 0.03 1.76 6.95 -2.39 -0.02 1.74 16 21 H 0.06 2.39 8.05 -2.38 -0.02 2.37 16 22 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 23 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 24 H 0.06 1.71 8.06 -2.39 -0.02 1.69 16 25 H 0.06 1.59 7.49 -2.39 -0.02 1.58 16 26 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.35 5.56 9.08 -89.69 -0.81 4.75 16 28 H 0.35 5.56 8.99 -89.70 -0.81 4.76 16 29 H 0.02 1.06 7.76 -2.38 -0.02 1.04 16 30 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 Total: -1.00 -68.04 243.96 0.83 -67.21 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -0.50 Total: 7.11 kcal Atomic # 6 Polarization: -12.26 SS G_CDS: 3.21 Total: -9.05 kcal Atomic # 7 Polarization: -110.44 SS G_CDS: -3.91 Total: -114.36 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 2.03 Total: 49.09 kcal Total: -68.04 0.83 -67.21 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642878762.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.896 kcal (2) G-P(sol) polarization free energy of solvation -68.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds