Wall clock time and date at job start Mon Mar 30 2020 02:11:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86804 * 119.99561 * 2 1 4 4 H 1.48501 * 109.47038 * 270.00232 * 3 2 1 5 5 H 1.48498 * 109.46951 * 30.00034 * 3 2 1 6 6 H 1.48499 * 109.47377 * 150.00186 * 3 2 1 7 7 C 1.38807 * 120.00692 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00509 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00061 * 0.02562 * 7 2 1 10 10 C 1.47471 * 125.62597 * 359.91787 * 9 7 2 11 11 C 1.54906 * 104.81210 * 204.13711 * 10 9 7 12 12 C 1.55156 * 101.61451 * 323.04512 * 11 10 9 13 13 H 1.09006 * 110.71879 * 276.93547 * 12 11 10 14 14 C 1.53005 * 110.71903 * 153.84569 * 12 11 10 15 15 C 1.53003 * 109.46993 * 174.99405 * 14 12 11 16 16 N 1.46901 * 109.46638 * 179.97438 * 15 14 12 17 17 C 1.47017 * 125.65429 * 179.97438 * 9 7 2 18 18 H 0.96996 * 120.00904 * 0.02562 * 1 2 3 19 19 H 1.09008 * 110.34870 * 85.31840 * 10 9 7 20 20 H 1.09001 * 110.40581 * 322.98876 * 10 9 7 21 21 H 1.09002 * 111.00655 * 204.94912 * 11 10 9 22 22 H 1.09002 * 111.00329 * 81.13838 * 11 10 9 23 23 H 1.08995 * 109.47101 * 294.99732 * 14 12 11 24 24 H 1.08998 * 109.46846 * 54.99796 * 14 12 11 25 25 H 1.08995 * 109.47465 * 300.00105 * 15 14 12 26 26 H 1.09000 * 109.46533 * 60.00272 * 15 14 12 27 27 H 1.00903 * 110.99351 * 179.97438 * 16 15 14 28 28 H 1.00895 * 111.00817 * 303.96119 * 16 15 14 29 29 H 1.08998 * 109.88206 * 59.48761 * 17 9 7 30 30 H 1.09004 * 110.01118 * 298.39854 * 17 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 2.4974 2.0466 -1.4001 5 1 1.4474 2.6527 0.7000 6 1 3.5476 1.4404 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3258 -2.3880 0.0005 10 6 -0.1418 -2.5328 0.0017 11 6 -0.4012 -3.9320 0.6136 12 6 0.7788 -4.7524 0.0289 13 1 0.5448 -5.1013 -0.9769 14 6 1.1238 -5.9307 0.9419 15 6 2.2032 -6.7897 0.2800 16 7 2.5348 -7.9207 1.1569 17 6 1.9320 -3.7274 0.0005 18 1 -0.4851 0.8399 -0.0004 19 1 -0.5281 -2.4865 -1.0166 20 1 -0.5996 -1.7586 0.6175 21 1 -1.3587 -4.3328 0.2806 22 1 -0.3518 -3.8977 1.7020 23 1 1.4928 -5.5550 1.8962 24 1 0.2315 -6.5339 1.1094 25 1 1.8342 -7.1654 -0.6743 26 1 3.0954 -6.1864 0.1125 27 1 3.2458 -8.5038 0.7415 28 1 2.8183 -7.5992 2.0703 29 1 2.5590 -3.8505 0.8836 30 1 2.5296 -3.8663 -0.9004 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000642878763.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:48 Heat of formation + Delta-G solvation = 11.006397 kcal Electronic energy + Delta-G solvation = -11426.683052 eV Core-core repulsion = 9449.922637 eV Total energy + Delta-G solvation = -1976.760414 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -37.82654 -35.03894 -32.62764 -30.15990 -28.62953 -25.95237 -24.23906 -21.71342 -20.02301 -19.29952 -16.81583 -15.67473 -15.42420 -14.59153 -14.37482 -13.54764 -13.45213 -12.42082 -12.06732 -11.80526 -11.60112 -11.45511 -10.93391 -10.81069 -10.64838 -10.10685 -9.91786 -9.82323 -9.70354 -9.39217 -8.66975 -8.60586 -6.77317 -5.60766 -3.02237 3.41852 3.46349 3.48686 4.52538 4.60968 5.19639 5.27519 5.48697 5.54984 5.67450 5.84071 5.88626 5.97805 6.15234 6.38643 6.41956 6.48499 6.67651 6.74723 6.85529 7.06260 7.14602 7.42377 7.59122 7.67830 7.91782 8.42023 9.27144 9.88460 10.54750 11.43100 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.074522 B = 0.009450 C = 0.008631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 375.639346 B = 2962.156357 C = 3243.216950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.013 4.013 3 Si 0.914 3.086 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.222 4.222 8 H 0.076 0.924 9 N -0.606 5.606 10 C 0.151 3.849 11 C -0.139 4.139 12 C -0.100 4.100 13 H 0.068 0.932 14 C -0.103 4.103 15 C 0.059 3.941 16 N -0.855 5.855 17 C 0.142 3.858 18 H 0.251 0.749 19 H 0.010 0.990 20 H 0.105 0.895 21 H 0.056 0.944 22 H 0.058 0.942 23 H 0.059 0.941 24 H 0.065 0.935 25 H 0.068 0.932 26 H 0.029 0.971 27 H 0.337 0.663 28 H 0.339 0.661 29 H 0.019 0.981 30 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.486 -10.259 1.374 10.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.208 4.208 3 Si 0.745 3.255 4 H -0.217 1.217 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.350 4.350 8 H 0.094 0.906 9 N -0.332 5.332 10 C 0.027 3.973 11 C -0.178 4.178 12 C -0.120 4.120 13 H 0.087 0.913 14 C -0.141 4.141 15 C -0.072 4.072 16 N -0.384 5.384 17 C 0.016 3.984 18 H 0.062 0.938 19 H 0.028 0.972 20 H 0.122 0.878 21 H 0.075 0.925 22 H 0.077 0.923 23 H 0.078 0.922 24 H 0.084 0.916 25 H 0.087 0.913 26 H 0.048 0.952 27 H 0.148 0.852 28 H 0.151 0.849 29 H 0.037 0.963 30 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 1.691 -10.234 1.270 10.450 hybrid contribution 1.476 1.246 -0.121 1.936 sum 3.167 -8.988 1.149 9.598 Atomic orbital electron populations 1.69812 1.04890 1.24678 1.57811 1.24790 0.95728 0.97693 1.02625 0.86077 0.78505 0.83410 0.77547 1.21661 1.21632 1.20746 1.19098 0.90489 0.82640 1.42811 0.90613 1.44552 1.02092 0.99831 1.86743 1.21927 0.84597 0.92773 0.98053 1.23036 0.96052 0.98772 0.99953 1.22148 0.97201 0.94209 0.98441 0.91308 1.21547 0.98305 0.95648 0.98597 1.21874 0.97884 0.91068 0.96339 1.58774 1.49976 1.22870 1.06748 1.21332 0.93800 0.85988 0.97262 0.93783 0.97200 0.87768 0.92550 0.92288 0.92214 0.91640 0.91317 0.95229 0.85193 0.84939 0.96273 0.96653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.66 10.09 55.49 0.56 -27.10 16 2 C -0.01 -0.38 5.49 -17.43 -0.10 -0.48 16 3 Si 0.91 22.52 29.55 -169.99 -5.02 17.49 16 4 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.22 -6.42 10.27 -15.06 -0.15 -6.57 16 8 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 9 N -0.61 -16.28 3.40 -170.04 -0.58 -16.86 16 10 C 0.15 3.84 5.89 -2.50 -0.01 3.83 16 11 C -0.14 -2.78 6.53 -24.58 -0.16 -2.94 16 12 C -0.10 -1.83 2.93 -88.79 -0.26 -2.09 16 13 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 14 C -0.10 -1.54 4.88 -26.73 -0.13 -1.67 16 15 C 0.06 0.78 6.68 -3.82 -0.03 0.75 16 16 N -0.85 -9.76 9.62 -10.37 -0.10 -9.86 16 17 C 0.14 3.11 6.23 -3.07 -0.02 3.09 16 18 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 19 H 0.01 0.27 8.14 -51.92 -0.42 -0.15 16 20 H 0.10 2.95 5.88 -51.93 -0.31 2.65 16 21 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 22 H 0.06 1.16 8.05 -51.93 -0.42 0.75 16 23 H 0.06 0.92 7.93 -51.93 -0.41 0.51 16 24 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 25 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.03 0.41 7.68 -51.93 -0.40 0.01 16 27 H 0.34 3.16 9.08 -39.29 -0.36 2.80 16 28 H 0.34 3.55 8.99 -39.29 -0.35 3.19 16 29 H 0.02 0.42 7.68 -51.93 -0.40 0.02 16 30 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 243.16 15.07 3.66 3.66 Total: -1.00 -30.79 243.16 -7.06 -37.86 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -4.73 Total: 0.88 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: -0.86 Total: -6.08 kcal Atomic # 7 Polarization: -53.69 SS G_CDS: -0.12 Total: -53.81 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -30.79 -7.06 -37.86 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642878763.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.863 kcal (2) G-P(sol) polarization free energy of solvation -30.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds