Wall clock time and date at job start Mon Mar 30 2020 02:11:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86804 * 119.99561 * 2 1 4 4 H 1.48501 * 109.47038 * 270.00232 * 3 2 1 5 5 H 1.48498 * 109.46951 * 30.00034 * 3 2 1 6 6 H 1.48499 * 109.47377 * 150.00186 * 3 2 1 7 7 C 1.38807 * 120.00692 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00509 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00061 * 0.02562 * 7 2 1 10 10 C 1.47471 * 125.62597 * 359.91787 * 9 7 2 11 11 C 1.54906 * 104.81210 * 204.13711 * 10 9 7 12 12 C 1.55156 * 101.61451 * 323.04512 * 11 10 9 13 13 H 1.09006 * 110.71879 * 276.93547 * 12 11 10 14 14 C 1.53005 * 110.71903 * 153.84569 * 12 11 10 15 15 C 1.53003 * 109.46993 * 174.99405 * 14 12 11 16 16 N 1.46901 * 109.46638 * 179.97438 * 15 14 12 17 17 C 1.47017 * 125.65429 * 179.97438 * 9 7 2 18 18 H 0.96996 * 120.00904 * 0.02562 * 1 2 3 19 19 H 1.09008 * 110.34870 * 85.31840 * 10 9 7 20 20 H 1.09001 * 110.40581 * 322.98876 * 10 9 7 21 21 H 1.09002 * 111.00655 * 204.94912 * 11 10 9 22 22 H 1.09002 * 111.00329 * 81.13838 * 11 10 9 23 23 H 1.08995 * 109.47101 * 294.99732 * 14 12 11 24 24 H 1.08998 * 109.46846 * 54.99796 * 14 12 11 25 25 H 1.08995 * 109.47465 * 300.00105 * 15 14 12 26 26 H 1.09000 * 109.46533 * 60.00272 * 15 14 12 27 27 H 1.00903 * 110.99351 * 179.97438 * 16 15 14 28 28 H 1.00895 * 111.00817 * 303.96119 * 16 15 14 29 29 H 1.08998 * 109.88206 * 59.48761 * 17 9 7 30 30 H 1.09004 * 110.01118 * 298.39854 * 17 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 2.4974 2.0466 -1.4001 5 1 1.4474 2.6527 0.7000 6 1 3.5476 1.4404 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3258 -2.3880 0.0005 10 6 -0.1418 -2.5328 0.0017 11 6 -0.4012 -3.9320 0.6136 12 6 0.7788 -4.7524 0.0289 13 1 0.5448 -5.1013 -0.9769 14 6 1.1238 -5.9307 0.9419 15 6 2.2032 -6.7897 0.2800 16 7 2.5348 -7.9207 1.1569 17 6 1.9320 -3.7274 0.0005 18 1 -0.4851 0.8399 -0.0004 19 1 -0.5281 -2.4865 -1.0166 20 1 -0.5996 -1.7586 0.6175 21 1 -1.3587 -4.3328 0.2806 22 1 -0.3518 -3.8977 1.7020 23 1 1.4928 -5.5550 1.8962 24 1 0.2315 -6.5339 1.1094 25 1 1.8342 -7.1654 -0.6743 26 1 3.0954 -6.1864 0.1125 27 1 3.2458 -8.5038 0.7415 28 1 2.8183 -7.5992 2.0703 29 1 2.5590 -3.8505 0.8836 30 1 2.5296 -3.8663 -0.9004 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000642878763.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:48 Heat of formation + Delta-G solvation = -10.844052 kcal Electronic energy + Delta-G solvation = -11427.630558 eV Core-core repulsion = 9449.922637 eV Total energy + Delta-G solvation = -1977.707921 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.49695 -36.37193 -34.44277 -31.92129 -30.34071 -27.66681 -26.04614 -23.05795 -21.88845 -20.83285 -18.89814 -17.08845 -16.62844 -16.54276 -15.80983 -15.17309 -14.85104 -14.27226 -13.60000 -13.39579 -13.28706 -13.18471 -12.78480 -12.68507 -12.05966 -11.99240 -11.75216 -11.45072 -11.42016 -11.18152 -10.75778 -9.58914 -8.89787 -7.78790 -5.23814 1.44605 1.47221 1.56059 2.48528 3.29878 3.57946 3.78526 3.88370 4.00593 4.25065 4.42554 4.50053 4.69280 4.69969 4.79971 4.88267 5.06974 5.12030 5.26008 5.31369 5.43095 5.51807 5.66735 5.81626 6.23838 6.30224 6.63469 7.09574 7.77700 8.42521 9.23312 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.074522 B = 0.009450 C = 0.008631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 375.639346 B = 2962.156357 C = 3243.216950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.070 4.070 3 Si 0.983 3.017 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.269 1.269 7 C -0.244 4.244 8 H 0.079 0.921 9 N -0.630 5.630 10 C 0.151 3.849 11 C -0.126 4.126 12 C -0.086 4.086 13 H 0.078 0.922 14 C -0.092 4.092 15 C 0.064 3.936 16 N -0.856 5.856 17 C 0.138 3.862 18 H 0.248 0.752 19 H -0.015 1.015 20 H 0.070 0.930 21 H 0.083 0.917 22 H 0.061 0.939 23 H 0.055 0.945 24 H 0.077 0.923 25 H 0.073 0.927 26 H 0.022 0.978 27 H 0.350 0.650 28 H 0.345 0.655 29 H 0.023 0.977 30 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.176 -11.478 1.646 12.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.262 4.262 3 Si 0.811 3.189 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.194 1.194 7 C -0.373 4.373 8 H 0.097 0.903 9 N -0.357 5.357 10 C 0.026 3.974 11 C -0.165 4.165 12 C -0.106 4.106 13 H 0.097 0.903 14 C -0.130 4.130 15 C -0.067 4.067 16 N -0.386 5.386 17 C 0.013 3.987 18 H 0.057 0.943 19 H 0.003 0.997 20 H 0.088 0.912 21 H 0.101 0.899 22 H 0.080 0.920 23 H 0.074 0.926 24 H 0.096 0.904 25 H 0.092 0.908 26 H 0.041 0.959 27 H 0.163 0.837 28 H 0.157 0.843 29 H 0.041 0.959 30 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 2.404 -11.494 1.546 11.843 hybrid contribution 1.272 1.599 -0.218 2.054 sum 3.675 -9.895 1.328 10.638 Atomic orbital electron populations 1.70072 1.06309 1.25099 1.58565 1.25691 0.96702 1.01152 1.02640 0.85010 0.77601 0.78794 0.77510 1.21277 1.21704 1.19359 1.19499 0.91036 0.84015 1.42734 0.90279 1.44902 1.02901 1.01115 1.86751 1.21747 0.84056 0.95273 0.96342 1.22898 0.98187 0.95562 0.99812 1.22078 0.94628 0.94150 0.99726 0.90341 1.21422 0.99463 0.94551 0.97581 1.21748 0.96983 0.91304 0.96679 1.58725 1.50809 1.22179 1.06905 1.21524 0.95146 0.84864 0.97197 0.94271 0.99734 0.91154 0.89888 0.92015 0.92612 0.90437 0.90814 0.95931 0.83725 0.84268 0.95949 0.96602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.38 10.09 21.65 0.22 -58.16 16 2 C -0.07 -4.07 5.49 84.86 0.47 -3.60 16 3 Si 0.98 46.63 29.55 68.60 2.03 48.66 16 4 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 5 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 6 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 7 C -0.24 -14.25 10.27 84.03 0.86 -13.39 16 8 H 0.08 4.42 7.83 -2.91 -0.02 4.40 16 9 N -0.63 -34.18 3.40 -691.89 -2.35 -36.53 16 10 C 0.15 7.80 5.89 86.85 0.51 8.31 16 11 C -0.13 -4.86 6.53 31.98 0.21 -4.65 16 12 C -0.09 -2.97 2.93 -9.61 -0.03 -3.00 16 13 H 0.08 2.57 8.14 -2.38 -0.02 2.55 16 14 C -0.09 -2.50 4.88 30.60 0.15 -2.35 16 15 C 0.06 1.51 6.68 86.30 0.58 2.08 16 16 N -0.86 -17.00 9.62 -186.71 -1.80 -18.79 16 17 C 0.14 5.90 6.23 86.73 0.54 6.44 16 18 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 19 H -0.02 -0.85 8.14 -2.38 -0.02 -0.87 16 20 H 0.07 4.12 5.88 -2.39 -0.01 4.11 16 21 H 0.08 2.75 8.14 -2.39 -0.02 2.74 16 22 H 0.06 2.34 8.05 -2.39 -0.02 2.32 16 23 H 0.06 1.58 7.93 -2.39 -0.02 1.56 16 24 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 25 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.02 0.56 7.68 -2.39 -0.02 0.55 16 27 H 0.35 5.54 9.08 -89.69 -0.81 4.73 16 28 H 0.34 6.26 8.99 -89.70 -0.81 5.45 16 29 H 0.02 0.95 7.68 -2.39 -0.02 0.93 16 30 H 0.02 0.68 8.14 -2.38 -0.02 0.66 16 Total: -1.00 -66.19 243.16 0.89 -65.31 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -0.50 Total: 9.67 kcal Atomic # 6 Polarization: -13.44 SS G_CDS: 3.29 Total: -10.15 kcal Atomic # 7 Polarization: -109.55 SS G_CDS: -3.93 Total: -113.48 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.66 kcal Total: -66.19 0.89 -65.31 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642878763.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.463 kcal (2) G-P(sol) polarization free energy of solvation -66.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds