Wall clock time and date at job start Mon Mar 30 2020 02:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46911 * 2 1 4 4 N 1.46897 * 109.47551 * 239.99567 * 2 1 3 5 5 C 1.46904 * 110.99836 * 84.99837 * 4 2 1 6 6 C 1.50693 * 109.47286 * 180.02562 * 5 4 2 7 7 H 1.08001 * 120.00007 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00130 * 180.02562 * 6 5 4 9 9 N 1.31506 * 120.00203 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00232 * 179.97438 * 8 6 5 11 11 H 1.48493 * 109.47310 * 89.99868 * 10 8 6 12 12 H 1.48503 * 109.47314 * 210.00303 * 10 8 6 13 13 H 1.48511 * 109.46908 * 329.99846 * 10 8 6 14 14 C 1.52999 * 109.46957 * 119.99607 * 2 1 3 15 15 C 1.53937 * 113.73474 * 281.78006 * 14 2 1 16 16 N 1.48192 * 86.09915 * 221.95605 * 15 14 2 17 17 C 1.47964 * 90.79910 * 24.59814 * 16 15 14 18 18 H 1.09000 * 109.47328 * 298.65782 * 1 2 3 19 19 H 1.09002 * 109.46724 * 58.65464 * 1 2 3 20 20 H 1.09003 * 109.46987 * 178.65023 * 1 2 3 21 21 H 1.00904 * 111.00214 * 321.05440 * 4 2 1 22 22 H 1.09000 * 109.47411 * 300.00311 * 5 4 2 23 23 H 1.09006 * 109.46839 * 59.99954 * 5 4 2 24 24 H 0.97004 * 120.00596 * 179.97438 * 9 8 6 25 25 H 1.09003 * 112.93664 * 53.34339 * 14 2 1 26 26 H 1.08998 * 113.75972 * 336.23318 * 15 14 2 27 27 H 1.08998 * 113.76107 * 107.60568 * 15 14 2 28 28 H 1.00902 * 111.07279 * 137.52397 * 16 15 14 29 29 H 1.08998 * 113.75597 * 221.07988 * 17 16 15 30 30 H 1.09001 * 113.85486 * 89.73199 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0198 -0.6926 -1.1993 5 6 2.0826 0.2225 -2.3469 6 6 2.5875 -0.5219 -3.5559 7 1 2.8373 -1.5698 -3.4795 8 6 2.7317 0.1351 -4.7594 9 7 2.4281 1.4113 -4.8525 10 14 3.3583 -0.7874 -6.2580 11 1 2.2094 -1.3697 -6.9970 12 1 4.0935 0.1499 -7.1447 13 1 4.2703 -1.8760 -5.8236 14 6 2.0400 -0.7212 1.2493 15 6 1.9753 0.1336 2.5279 16 7 3.3125 -0.4210 2.8449 17 6 3.5702 -0.6748 1.4102 18 1 -0.3634 0.4928 0.9018 19 1 -0.3633 0.5346 -0.8777 20 1 -0.3633 -1.0274 -0.0242 21 1 1.4496 -1.4980 -1.4100 22 1 1.0872 0.6162 -2.5526 23 1 2.7589 1.0462 -2.1181 24 1 2.5298 1.8736 -5.6991 25 1 1.6165 -1.7187 1.3665 26 1 1.9786 1.2071 2.3392 27 1 1.1946 -0.1748 3.2233 28 1 3.9271 0.2954 3.2016 29 1 4.0615 -1.6278 1.2142 30 1 4.0411 0.1607 0.8923 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686245930.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:05 Heat of formation + Delta-G solvation = 20.223167 kcal Electronic energy + Delta-G solvation = -11257.119271 eV Core-core repulsion = 9280.758526 eV Total energy + Delta-G solvation = -1976.360745 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.30149 -35.60206 -32.70445 -29.91389 -26.66744 -26.09218 -25.39544 -22.11399 -20.82116 -19.24526 -16.66427 -15.82986 -15.20507 -14.66470 -14.13871 -13.78028 -13.03655 -12.86872 -12.42448 -12.12716 -11.87609 -11.50588 -11.28158 -10.86005 -10.74810 -10.41273 -10.38296 -10.21612 -9.80203 -9.17874 -8.73402 -8.49011 -7.24553 -6.03630 -4.05432 3.31466 3.37552 3.42285 4.34558 4.42021 4.73497 4.98180 5.32306 5.52763 5.57182 5.63501 5.68566 5.73060 5.85210 6.01019 6.17764 6.23073 6.25185 6.38416 6.47913 6.71732 7.26248 7.39532 7.44450 7.79210 8.13273 8.40962 8.63112 9.04413 9.59638 11.07407 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.066106 B = 0.008586 C = 0.008131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 423.458992 B = 3260.382658 C = 3442.893123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.088 3.912 3 H 0.068 0.932 4 N -0.682 5.682 5 C 0.195 3.805 6 C -0.514 4.514 7 H 0.062 0.938 8 C 0.055 3.945 9 N -0.899 5.899 10 Si 0.898 3.102 11 H -0.281 1.281 12 H -0.287 1.287 13 H -0.273 1.273 14 C -0.097 4.097 15 C 0.006 3.994 16 N -0.646 5.646 17 C 0.026 3.974 18 H 0.049 0.951 19 H 0.056 0.944 20 H 0.052 0.948 21 H 0.329 0.671 22 H -0.014 1.014 23 H 0.025 0.975 24 H 0.261 0.739 25 H 0.090 0.910 26 H 0.063 0.937 27 H 0.080 0.920 28 H 0.311 0.689 29 H 0.085 0.915 30 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.609 -1.703 10.489 10.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.024 4.024 3 H 0.086 0.914 4 N -0.312 5.312 5 C 0.068 3.932 6 C -0.552 4.552 7 H 0.080 0.920 8 C -0.146 4.146 9 N -0.538 5.538 10 Si 0.726 3.274 11 H -0.207 1.207 12 H -0.213 1.213 13 H -0.198 1.198 14 C -0.116 4.116 15 C -0.125 4.125 16 N -0.270 5.270 17 C -0.104 4.104 18 H 0.068 0.932 19 H 0.075 0.925 20 H 0.071 0.929 21 H 0.146 0.854 22 H 0.004 0.996 23 H 0.043 0.957 24 H 0.071 0.929 25 H 0.108 0.892 26 H 0.081 0.919 27 H 0.099 0.901 28 H 0.123 0.877 29 H 0.103 0.897 30 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.047 -2.232 10.887 11.162 hybrid contribution -0.511 0.714 -1.570 1.799 sum -1.558 -1.518 9.316 9.567 Atomic orbital electron populations 1.22465 0.98152 1.01537 1.01493 1.21549 0.91946 0.97489 0.91374 0.91353 1.60703 1.55381 1.10431 1.04661 1.19559 0.95161 0.91751 0.86681 1.21204 1.43456 0.96934 0.93631 0.91971 1.24989 0.95674 0.94919 0.99025 1.69958 1.48991 1.09005 1.25880 0.86494 0.78908 0.79560 0.82421 1.20738 1.21258 1.19760 1.22944 0.96091 0.99467 0.93146 1.23776 0.93552 0.97881 0.97268 1.66944 1.03983 1.38431 1.17630 1.23510 0.97042 1.02288 0.87517 0.93153 0.92469 0.92908 0.85415 0.99577 0.95700 0.92943 0.89173 0.91877 0.90116 0.87678 0.89692 0.91363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.76 9.12 37.16 0.34 -2.42 16 2 C 0.09 1.52 2.30 -67.71 -0.16 1.36 16 3 H 0.07 1.26 7.70 -51.93 -0.40 0.86 16 4 N -0.68 -14.36 6.10 -107.99 -0.66 -15.02 16 5 C 0.20 5.08 5.24 -4.98 -0.03 5.05 16 6 C -0.51 -14.56 9.32 -34.44 -0.32 -14.88 16 7 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 8 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 9 N -0.90 -26.90 13.28 55.43 0.74 -26.17 16 10 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 13 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 14 C -0.10 -1.45 3.48 -89.69 -0.31 -1.76 16 15 C 0.01 0.08 8.35 -2.63 -0.02 0.06 16 16 N -0.65 -8.75 8.53 -116.83 -1.00 -9.75 16 17 C 0.03 0.40 8.34 -2.76 -0.02 0.38 16 18 H 0.05 0.67 8.06 -51.93 -0.42 0.25 16 19 H 0.06 0.99 7.49 -51.93 -0.39 0.60 16 20 H 0.05 0.77 8.11 -51.93 -0.42 0.35 16 21 H 0.33 6.73 8.45 -39.29 -0.33 6.39 16 22 H -0.01 -0.37 7.46 -51.93 -0.39 -0.76 16 23 H 0.02 0.70 8.06 -51.93 -0.42 0.28 16 24 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 25 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 26 H 0.06 0.77 8.03 -51.93 -0.42 0.36 16 27 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 28 H 0.31 3.69 8.92 -39.29 -0.35 3.34 16 29 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.07 1.09 8.10 -51.93 -0.42 0.67 16 LS Contribution 251.31 15.07 3.79 3.79 Total: -1.00 -29.43 251.31 -7.54 -36.96 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -4.77 Total: 4.19 kcal Atomic # 6 Polarization: -10.12 SS G_CDS: -0.62 Total: -10.74 kcal Atomic # 7 Polarization: -50.01 SS G_CDS: -0.92 Total: -50.93 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -29.43 -7.54 -36.96 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686245930.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.188 kcal (2) G-P(sol) polarization free energy of solvation -29.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds