Wall clock time and date at job start Mon Mar 30 2020 02:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46911 * 2 1 4 4 N 1.46897 * 109.47551 * 239.99567 * 2 1 3 5 5 C 1.46904 * 110.99836 * 84.99837 * 4 2 1 6 6 C 1.50693 * 109.47286 * 180.02562 * 5 4 2 7 7 H 1.08001 * 120.00007 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00130 * 180.02562 * 6 5 4 9 9 N 1.31506 * 120.00203 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00232 * 179.97438 * 8 6 5 11 11 H 1.48493 * 109.47310 * 89.99868 * 10 8 6 12 12 H 1.48503 * 109.47314 * 210.00303 * 10 8 6 13 13 H 1.48511 * 109.46908 * 329.99846 * 10 8 6 14 14 C 1.52999 * 109.46957 * 119.99607 * 2 1 3 15 15 C 1.53937 * 113.73474 * 281.78006 * 14 2 1 16 16 N 1.48192 * 86.09915 * 221.95605 * 15 14 2 17 17 C 1.47964 * 90.79910 * 24.59814 * 16 15 14 18 18 H 1.09000 * 109.47328 * 298.65782 * 1 2 3 19 19 H 1.09002 * 109.46724 * 58.65464 * 1 2 3 20 20 H 1.09003 * 109.46987 * 178.65023 * 1 2 3 21 21 H 1.00904 * 111.00214 * 321.05440 * 4 2 1 22 22 H 1.09000 * 109.47411 * 300.00311 * 5 4 2 23 23 H 1.09006 * 109.46839 * 59.99954 * 5 4 2 24 24 H 0.97004 * 120.00596 * 179.97438 * 9 8 6 25 25 H 1.09003 * 112.93664 * 53.34339 * 14 2 1 26 26 H 1.08998 * 113.75972 * 336.23318 * 15 14 2 27 27 H 1.08998 * 113.76107 * 107.60568 * 15 14 2 28 28 H 1.00902 * 111.07279 * 137.52397 * 16 15 14 29 29 H 1.08998 * 113.75597 * 221.07988 * 17 16 15 30 30 H 1.09001 * 113.85486 * 89.73199 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0198 -0.6926 -1.1993 5 6 2.0826 0.2225 -2.3469 6 6 2.5875 -0.5219 -3.5559 7 1 2.8373 -1.5698 -3.4795 8 6 2.7317 0.1351 -4.7594 9 7 2.4281 1.4113 -4.8525 10 14 3.3583 -0.7874 -6.2580 11 1 2.2094 -1.3697 -6.9970 12 1 4.0935 0.1499 -7.1447 13 1 4.2703 -1.8760 -5.8236 14 6 2.0400 -0.7212 1.2493 15 6 1.9753 0.1336 2.5279 16 7 3.3125 -0.4210 2.8449 17 6 3.5702 -0.6748 1.4102 18 1 -0.3634 0.4928 0.9018 19 1 -0.3633 0.5346 -0.8777 20 1 -0.3633 -1.0274 -0.0242 21 1 1.4496 -1.4980 -1.4100 22 1 1.0872 0.6162 -2.5526 23 1 2.7589 1.0462 -2.1181 24 1 2.5298 1.8736 -5.6991 25 1 1.6165 -1.7187 1.3665 26 1 1.9786 1.2071 2.3392 27 1 1.1946 -0.1748 3.2233 28 1 3.9271 0.2954 3.2016 29 1 4.0615 -1.6278 1.2142 30 1 4.0411 0.1607 0.8923 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686245930.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:05 Heat of formation + Delta-G solvation = -2.879871 kcal Electronic energy + Delta-G solvation = -11258.121094 eV Core-core repulsion = 9280.758526 eV Total energy + Delta-G solvation = -1977.362568 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.50945 -37.23893 -34.76941 -31.63457 -28.03688 -27.80114 -26.64648 -24.02645 -22.36992 -20.48532 -18.60979 -17.27244 -16.64375 -16.44215 -15.67131 -15.41727 -14.54688 -14.34398 -13.92014 -13.61977 -13.39674 -13.20592 -12.87141 -12.64364 -12.53880 -12.13605 -11.73333 -11.60154 -11.45007 -11.15093 -10.66682 -9.86482 -9.01603 -8.22599 -6.33531 1.40833 1.42343 1.54157 2.39787 3.10703 3.23050 3.36728 3.75272 4.13472 4.32267 4.39848 4.44834 4.48575 4.65980 4.83599 4.90382 4.99366 5.01822 5.09168 5.14351 5.24578 5.35753 5.44631 5.62977 6.03935 6.35968 6.48639 6.75839 6.92245 7.37666 8.88773 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.066106 B = 0.008586 C = 0.008131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 423.458992 B = 3260.382658 C = 3442.893123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.088 3.912 3 H 0.051 0.949 4 N -0.681 5.681 5 C 0.213 3.787 6 C -0.535 4.535 7 H 0.064 0.936 8 C 0.001 3.999 9 N -0.935 5.935 10 Si 0.972 3.028 11 H -0.271 1.271 12 H -0.282 1.282 13 H -0.265 1.265 14 C -0.094 4.094 15 C 0.017 3.983 16 N -0.645 5.645 17 C 0.023 3.977 18 H 0.078 0.922 19 H 0.032 0.968 20 H 0.064 0.936 21 H 0.334 0.666 22 H -0.038 1.038 23 H -0.005 1.005 24 H 0.265 0.735 25 H 0.096 0.904 26 H 0.070 0.930 27 H 0.100 0.900 28 H 0.323 0.677 29 H 0.079 0.921 30 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.748 -2.668 11.124 11.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.023 4.023 3 H 0.070 0.930 4 N -0.310 5.310 5 C 0.085 3.915 6 C -0.573 4.573 7 H 0.082 0.918 8 C -0.197 4.197 9 N -0.575 5.575 10 Si 0.796 3.204 11 H -0.197 1.197 12 H -0.208 1.208 13 H -0.189 1.189 14 C -0.114 4.114 15 C -0.114 4.114 16 N -0.270 5.270 17 C -0.107 4.107 18 H 0.097 0.903 19 H 0.051 0.949 20 H 0.083 0.917 21 H 0.151 0.849 22 H -0.020 1.020 23 H 0.013 0.987 24 H 0.073 0.927 25 H 0.114 0.886 26 H 0.088 0.912 27 H 0.118 0.882 28 H 0.136 0.864 29 H 0.097 0.903 30 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.192 -3.204 11.553 12.048 hybrid contribution -0.476 1.042 -1.697 2.048 sum -1.668 -2.162 9.856 10.227 Atomic orbital electron populations 1.22365 0.96447 1.02318 1.01732 1.21618 0.93353 0.96615 0.90737 0.93026 1.60587 1.56400 1.09923 1.04134 1.19162 0.92788 0.91477 0.88096 1.21578 1.43754 0.97231 0.94782 0.91789 1.25946 0.95635 0.95779 1.02389 1.70086 1.49842 1.10668 1.26902 0.85347 0.78564 0.78273 0.78198 1.19668 1.20755 1.18916 1.22904 0.95777 0.99930 0.92776 1.23791 0.93640 0.97921 0.96050 1.66916 1.04631 1.39251 1.16194 1.23433 0.97102 1.01490 0.88718 0.90314 0.94921 0.91696 0.84857 1.02049 0.98728 0.92667 0.88618 0.91151 0.88151 0.86380 0.90280 0.92784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.07 9.12 71.98 0.66 -4.42 16 2 C 0.09 2.99 2.30 44.92 0.10 3.09 16 3 H 0.05 1.93 7.70 -2.39 -0.02 1.91 16 4 N -0.68 -28.89 6.10 -495.57 -3.03 -31.91 16 5 C 0.21 11.40 5.24 85.55 0.45 11.85 16 6 C -0.54 -30.70 9.32 25.60 0.24 -30.46 16 7 H 0.06 3.57 7.81 -2.91 -0.02 3.54 16 8 C 0.00 0.03 5.46 84.66 0.46 0.49 16 9 N -0.93 -56.79 13.28 21.45 0.28 -56.50 16 10 Si 0.97 44.49 29.54 68.60 2.03 46.52 16 11 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 12 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 13 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 14 C -0.09 -2.67 3.48 -10.15 -0.04 -2.70 16 15 C 0.02 0.38 8.35 86.37 0.72 1.10 16 16 N -0.64 -16.11 8.53 -523.53 -4.47 -20.57 16 17 C 0.02 0.67 8.34 86.41 0.72 1.39 16 18 H 0.08 1.90 8.06 -2.39 -0.02 1.88 16 19 H 0.03 1.12 7.49 -2.39 -0.02 1.10 16 20 H 0.06 1.78 8.11 -2.39 -0.02 1.76 16 21 H 0.33 13.59 8.45 -89.69 -0.76 12.83 16 22 H -0.04 -2.19 7.46 -2.39 -0.02 -2.21 16 23 H -0.01 -0.32 8.06 -2.38 -0.02 -0.34 16 24 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 25 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 26 H 0.07 1.54 8.03 -2.39 -0.02 1.53 16 27 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.32 6.99 8.92 -89.69 -0.80 6.19 16 29 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 30 H 0.05 1.73 8.10 -2.39 -0.02 1.71 16 Total: -1.00 -62.76 251.31 -2.30 -65.06 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: -0.44 Total: 17.05 kcal Atomic # 6 Polarization: -22.96 SS G_CDS: 3.32 Total: -19.65 kcal Atomic # 7 Polarization: -101.78 SS G_CDS: -7.21 Total: -108.98 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -62.76 -2.30 -65.06 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686245930.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.180 kcal (2) G-P(sol) polarization free energy of solvation -62.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds