Wall clock time and date at job start Mon Mar 30 2020 02:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09004 * 109.46481 * 2 1 4 4 C 1.53000 * 109.47089 * 119.99467 * 2 1 3 5 5 C 1.50696 * 109.47084 * 184.99949 * 4 2 1 6 6 H 1.07999 * 119.99926 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00246 * 180.02562 * 5 4 2 8 8 N 1.31515 * 119.99671 * 0.27389 * 7 5 4 9 9 Si 1.86802 * 120.00304 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.46909 * 359.97438 * 9 7 5 11 11 H 1.48492 * 109.47267 * 119.99835 * 9 7 5 12 12 H 1.48503 * 109.46947 * 239.99867 * 9 7 5 13 13 N 1.46898 * 109.47117 * 240.00171 * 2 1 3 14 14 N 1.45399 * 110.99711 * 304.99534 * 13 2 1 15 15 C 1.47478 * 110.99998 * 138.93803 * 14 13 2 16 16 C 1.53517 * 87.93390 * 138.70458 * 15 14 13 17 17 C 1.47483 * 110.99934 * 234.90831 * 14 13 2 18 18 H 1.08998 * 109.46618 * 185.32039 * 1 2 3 19 19 H 1.08997 * 109.47119 * 305.32495 * 1 2 3 20 20 H 1.09000 * 109.46684 * 65.32110 * 1 2 3 21 21 H 1.09006 * 109.46365 * 65.00343 * 4 2 1 22 22 H 1.08990 * 109.47436 * 305.00351 * 4 2 1 23 23 H 0.96994 * 120.00072 * 359.73019 * 8 7 5 24 24 H 1.00900 * 111.00153 * 68.95035 * 13 2 1 25 25 H 1.08994 * 113.47716 * 253.46844 * 15 14 13 26 26 H 1.09000 * 113.47651 * 23.93935 * 15 14 13 27 27 H 1.09004 * 114.17080 * 220.33160 * 16 15 14 28 28 H 1.08995 * 114.34826 * 87.63432 * 16 15 14 29 29 H 1.08993 * 113.47659 * 336.06364 * 17 14 13 30 30 H 1.09004 * 113.47250 * 106.47206 * 17 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7211 1.2493 5 6 3.5419 -0.6148 1.3128 6 1 4.0789 -0.0854 0.5396 7 6 4.2305 -1.1933 2.3578 8 7 3.5770 -1.8425 3.2964 9 14 6.0921 -1.0609 2.4369 10 1 6.5837 -0.2907 1.2663 11 1 6.4862 -0.3656 3.6883 12 1 6.6864 -2.4217 2.4184 13 7 2.0197 -0.6924 -1.1994 14 7 1.4594 -2.0308 -1.2936 15 6 1.0814 -2.3490 -2.6832 16 6 1.6586 -3.7539 -2.4598 17 6 2.5256 -3.0431 -1.4110 18 1 -0.3632 -1.0233 0.0953 19 1 -0.3633 0.5942 0.8384 20 1 -0.3633 0.4291 -0.9338 21 1 1.7517 -1.7714 1.2056 22 1 1.6055 -0.2617 2.1369 23 1 2.6103 -1.9110 3.2556 24 1 1.8213 -0.1579 -2.0319 25 1 0.0047 -2.3439 -2.8523 26 1 1.6282 -1.7680 -3.4258 27 1 2.2179 -4.1468 -3.3089 28 1 0.9504 -4.4696 -2.0425 29 1 3.4577 -2.6473 -1.8140 30 1 2.6733 -3.6255 -0.5015 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686775657.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:21 Heat of formation + Delta-G solvation = 52.308315 kcal Electronic energy + Delta-G solvation = -11671.525741 eV Core-core repulsion = 9696.556312 eV Total energy + Delta-G solvation = -1974.969429 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.18606 -35.44672 -32.54600 -29.40775 -26.83924 -25.43546 -25.13709 -22.72905 -19.78025 -19.25225 -16.73727 -15.98834 -15.64305 -14.40419 -13.73144 -13.59298 -12.94737 -12.73143 -12.23543 -11.73849 -11.62528 -11.19307 -11.09860 -10.96414 -10.56690 -10.31516 -10.10073 -9.99539 -9.57461 -8.97484 -8.36170 -8.13052 -7.53450 -6.14156 -3.78340 3.53205 3.57590 3.71381 4.12093 4.69783 4.75567 4.93928 5.27762 5.62282 5.66722 5.80946 5.87200 5.91837 5.96010 6.06031 6.12786 6.43792 6.47496 6.51932 6.65752 6.88525 7.00394 7.38581 7.72318 7.90318 8.19668 8.49956 8.74300 9.12877 9.90466 11.26420 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.040868 B = 0.013182 C = 0.011288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.961632 B = 2123.615227 C = 2479.936303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.104 3.896 3 H 0.068 0.932 4 C 0.022 3.978 5 C -0.569 4.569 6 H 0.050 0.950 7 C 0.007 3.993 8 N -0.926 5.926 9 Si 1.071 2.929 10 H -0.291 1.291 11 H -0.291 1.291 12 H -0.290 1.290 13 N -0.532 5.532 14 N -0.301 5.301 15 C -0.027 4.027 16 C -0.153 4.153 17 C 0.024 3.976 18 H 0.060 0.940 19 H 0.047 0.953 20 H 0.031 0.969 21 H 0.018 0.982 22 H 0.002 0.998 23 H 0.267 0.733 24 H 0.315 0.685 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.013 -0.537 -10.966 11.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.006 4.006 3 H 0.086 0.914 4 C -0.015 4.015 5 C -0.608 4.608 6 H 0.068 0.932 7 C -0.195 4.195 8 N -0.564 5.564 9 Si 0.901 3.099 10 H -0.217 1.217 11 H -0.218 1.218 12 H -0.217 1.217 13 N -0.253 5.253 14 N -0.114 5.114 15 C -0.158 4.158 16 C -0.192 4.192 17 C -0.106 4.106 18 H 0.079 0.921 19 H 0.066 0.934 20 H 0.050 0.950 21 H 0.036 0.964 22 H 0.020 0.980 23 H 0.077 0.923 24 H 0.132 0.868 25 H 0.094 0.906 26 H 0.088 0.912 27 H 0.090 0.910 28 H 0.106 0.894 29 H 0.096 0.904 30 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.572 -1.143 -9.200 9.621 hybrid contribution -1.696 0.856 -1.845 2.649 sum -4.268 -0.287 -11.045 11.845 Atomic orbital electron populations 1.22413 0.99175 1.01878 0.99505 1.21600 0.90437 0.96568 0.91946 0.91435 1.19184 0.96824 0.95457 0.90051 1.22018 0.91804 1.36958 1.09994 0.93187 1.25725 1.06439 0.94209 0.93134 1.70706 1.10157 1.40822 1.34690 0.83517 0.75028 0.76089 0.75250 1.21719 1.21764 1.21713 1.64272 1.57431 0.98958 1.04680 1.71972 1.22316 0.98291 1.18812 1.24152 1.01230 0.96929 0.93454 1.23097 1.00231 0.96058 0.99832 1.23672 0.95174 0.92944 0.98785 0.92059 0.93370 0.94954 0.96378 0.97952 0.92310 0.86832 0.90621 0.91180 0.90974 0.89436 0.90370 0.89877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.17 9.04 37.16 0.34 -2.84 16 2 C 0.10 2.26 3.09 -67.71 -0.21 2.05 16 3 H 0.07 1.47 8.14 -51.93 -0.42 1.04 16 4 C 0.02 0.59 3.79 -27.88 -0.11 0.48 16 5 C -0.57 -16.61 8.84 -34.44 -0.30 -16.91 16 6 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 7 C 0.01 0.20 5.46 -17.82 -0.10 0.10 16 8 N -0.93 -29.38 13.65 55.43 0.76 -28.62 16 9 Si 1.07 26.56 29.90 -169.99 -5.08 21.48 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 12 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 13 N -0.53 -10.59 6.22 -4.66 -0.03 -10.61 16 14 N -0.30 -5.63 4.89 -122.68 -0.60 -6.23 16 15 C -0.03 -0.39 7.72 -7.55 -0.06 -0.45 16 16 C -0.15 -2.09 8.47 -26.20 -0.22 -2.32 16 17 C 0.02 0.43 8.00 -7.54 -0.06 0.37 16 18 H 0.06 1.20 7.64 -51.93 -0.40 0.80 16 19 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 20 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 21 H 0.02 0.52 7.45 -51.93 -0.39 0.13 16 22 H 0.00 0.07 8.01 -51.93 -0.42 -0.35 16 23 H 0.27 8.50 7.22 -40.82 -0.29 8.20 16 24 H 0.32 5.37 8.05 -174.66 -1.41 3.96 16 25 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.07 0.92 7.78 -51.93 -0.40 0.52 16 27 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.08 1.45 8.10 -51.93 -0.42 1.03 16 30 H 0.08 1.69 8.14 -51.93 -0.42 1.27 16 LS Contribution 249.38 15.07 3.76 3.76 Total: -1.00 -31.84 249.38 -7.80 -39.65 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -5.89 Total: 0.09 kcal Atomic # 6 Polarization: -18.79 SS G_CDS: -0.72 Total: -19.51 kcal Atomic # 7 Polarization: -45.59 SS G_CDS: 0.13 Total: -45.46 kcal Atomic # 14 Polarization: 26.56 SS G_CDS: -5.08 Total: 21.48 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -31.84 -7.80 -39.65 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686775657.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.954 kcal (2) G-P(sol) polarization free energy of solvation -31.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds