Wall clock time and date at job start Mon Mar 30 2020 02:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09004 * 109.46481 * 2 1 4 4 C 1.53000 * 109.47089 * 119.99467 * 2 1 3 5 5 C 1.50696 * 109.47084 * 184.99949 * 4 2 1 6 6 H 1.07999 * 119.99926 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00246 * 180.02562 * 5 4 2 8 8 N 1.31515 * 119.99671 * 0.27389 * 7 5 4 9 9 Si 1.86802 * 120.00304 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.46909 * 359.97438 * 9 7 5 11 11 H 1.48492 * 109.47267 * 119.99835 * 9 7 5 12 12 H 1.48503 * 109.46947 * 239.99867 * 9 7 5 13 13 N 1.46898 * 109.47117 * 240.00171 * 2 1 3 14 14 N 1.45399 * 110.99711 * 304.99534 * 13 2 1 15 15 C 1.47478 * 110.99998 * 138.93803 * 14 13 2 16 16 C 1.53517 * 87.93390 * 138.70458 * 15 14 13 17 17 C 1.47483 * 110.99934 * 234.90831 * 14 13 2 18 18 H 1.08998 * 109.46618 * 185.32039 * 1 2 3 19 19 H 1.08997 * 109.47119 * 305.32495 * 1 2 3 20 20 H 1.09000 * 109.46684 * 65.32110 * 1 2 3 21 21 H 1.09006 * 109.46365 * 65.00343 * 4 2 1 22 22 H 1.08990 * 109.47436 * 305.00351 * 4 2 1 23 23 H 0.96994 * 120.00072 * 359.73019 * 8 7 5 24 24 H 1.00900 * 111.00153 * 68.95035 * 13 2 1 25 25 H 1.08994 * 113.47716 * 253.46844 * 15 14 13 26 26 H 1.09000 * 113.47651 * 23.93935 * 15 14 13 27 27 H 1.09004 * 114.17080 * 220.33160 * 16 15 14 28 28 H 1.08995 * 114.34826 * 87.63432 * 16 15 14 29 29 H 1.08993 * 113.47659 * 336.06364 * 17 14 13 30 30 H 1.09004 * 113.47250 * 106.47206 * 17 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7211 1.2493 5 6 3.5419 -0.6148 1.3128 6 1 4.0789 -0.0854 0.5396 7 6 4.2305 -1.1933 2.3578 8 7 3.5770 -1.8425 3.2964 9 14 6.0921 -1.0609 2.4369 10 1 6.5837 -0.2907 1.2663 11 1 6.4862 -0.3656 3.6883 12 1 6.6864 -2.4217 2.4184 13 7 2.0197 -0.6924 -1.1994 14 7 1.4594 -2.0308 -1.2936 15 6 1.0814 -2.3490 -2.6832 16 6 1.6586 -3.7539 -2.4598 17 6 2.5256 -3.0431 -1.4110 18 1 -0.3632 -1.0233 0.0953 19 1 -0.3633 0.5942 0.8384 20 1 -0.3633 0.4291 -0.9338 21 1 1.7517 -1.7714 1.2056 22 1 1.6055 -0.2617 2.1369 23 1 2.6103 -1.9110 3.2556 24 1 1.8213 -0.1579 -2.0319 25 1 0.0047 -2.3439 -2.8523 26 1 1.6282 -1.7680 -3.4258 27 1 2.2179 -4.1468 -3.3089 28 1 0.9504 -4.4696 -2.0425 29 1 3.4577 -2.6473 -1.8140 30 1 2.6733 -3.6255 -0.5015 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686775657.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:21 Heat of formation + Delta-G solvation = 30.422504 kcal Electronic energy + Delta-G solvation = -11672.474781 eV Core-core repulsion = 9696.556312 eV Total energy + Delta-G solvation = -1975.918469 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.53698 -37.20901 -34.70672 -31.02358 -28.81928 -26.74122 -26.54842 -24.92810 -21.34801 -20.71788 -18.83735 -17.63462 -17.03290 -15.86016 -15.65101 -15.32796 -14.80770 -14.39263 -13.60982 -13.24430 -13.17873 -12.98500 -12.93078 -12.59878 -12.46058 -11.93317 -11.78842 -11.58925 -11.35100 -10.65960 -10.45768 -10.38310 -9.04596 -8.55590 -6.20310 1.51785 1.62175 1.78430 2.61298 2.71646 3.28166 3.55978 3.66828 4.10476 4.21636 4.40655 4.48800 4.52545 4.64943 4.75910 4.87893 4.93501 4.96924 5.14836 5.15810 5.21844 5.23640 5.46920 5.66007 6.09876 6.26943 6.35121 6.73543 6.81304 7.57826 8.84966 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.040868 B = 0.013182 C = 0.011288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.961632 B = 2123.615227 C = 2479.936303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.109 3.891 3 H 0.067 0.933 4 C 0.029 3.971 5 C -0.572 4.572 6 H 0.046 0.954 7 C -0.049 4.049 8 N -0.950 5.950 9 Si 1.120 2.880 10 H -0.272 1.272 11 H -0.281 1.281 12 H -0.283 1.283 13 N -0.545 5.545 14 N -0.328 5.328 15 C -0.019 4.019 16 C -0.129 4.129 17 C 0.012 3.988 18 H 0.048 0.952 19 H 0.050 0.950 20 H 0.063 0.937 21 H -0.009 1.009 22 H -0.022 1.022 23 H 0.251 0.749 24 H 0.334 0.666 25 H 0.093 0.907 26 H 0.087 0.913 27 H 0.102 0.898 28 H 0.093 0.907 29 H 0.070 0.930 30 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.864 -0.211 -12.971 13.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.001 4.001 3 H 0.085 0.915 4 C -0.009 4.009 5 C -0.611 4.611 6 H 0.065 0.935 7 C -0.244 4.244 8 N -0.590 5.590 9 Si 0.943 3.057 10 H -0.197 1.197 11 H -0.207 1.207 12 H -0.209 1.209 13 N -0.268 5.268 14 N -0.142 5.142 15 C -0.149 4.149 16 C -0.168 4.168 17 C -0.118 4.118 18 H 0.067 0.933 19 H 0.069 0.931 20 H 0.082 0.918 21 H 0.009 0.991 22 H -0.004 1.004 23 H 0.060 0.940 24 H 0.153 0.847 25 H 0.111 0.889 26 H 0.105 0.895 27 H 0.120 0.880 28 H 0.111 0.889 29 H 0.089 0.911 30 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -2.448 -0.804 -11.233 11.525 hybrid contribution -1.782 0.740 -1.251 2.299 sum -4.230 -0.063 -12.483 13.181 Atomic orbital electron populations 1.22241 0.96688 1.01421 1.01275 1.21336 0.92412 0.95725 0.90603 0.91505 1.19041 0.95711 0.94222 0.91882 1.22303 0.93178 1.36092 1.09511 0.93526 1.27279 1.10919 0.93433 0.92775 1.70855 1.09290 1.42787 1.36025 0.82891 0.69736 0.76768 0.76326 1.19654 1.20718 1.20925 1.64080 1.58098 0.99830 1.04743 1.71934 1.22356 0.97374 1.22490 1.24213 1.02527 0.96931 0.91199 1.23027 0.98991 0.95924 0.98813 1.23681 0.95791 0.93691 0.98677 0.93318 0.93133 0.91840 0.99074 1.00394 0.94018 0.84748 0.88912 0.89451 0.87974 0.88893 0.91145 0.93676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.63 9.04 71.98 0.65 -4.98 16 2 C 0.11 4.69 3.09 44.92 0.14 4.83 16 3 H 0.07 2.85 8.14 -2.38 -0.02 2.83 16 4 C 0.03 1.58 3.79 29.85 0.11 1.69 16 5 C -0.57 -33.92 8.84 25.60 0.23 -33.70 16 6 H 0.05 2.75 7.74 -2.91 -0.02 2.73 16 7 C -0.05 -2.96 5.46 84.65 0.46 -2.50 16 8 N -0.95 -61.84 13.65 21.45 0.29 -61.55 16 9 Si 1.12 53.32 29.90 68.60 2.05 55.37 16 10 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 11 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 12 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 13 N -0.55 -21.04 6.22 -168.67 -1.05 -22.09 16 14 N -0.33 -11.95 4.89 -542.06 -2.65 -14.60 16 15 C -0.02 -0.48 7.72 83.58 0.65 0.16 16 16 C -0.13 -3.19 8.47 30.94 0.26 -2.92 16 17 C 0.01 0.42 8.00 83.58 0.67 1.09 16 18 H 0.05 1.86 7.64 -2.39 -0.02 1.84 16 19 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 20 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 21 H -0.01 -0.54 7.45 -2.38 -0.02 -0.56 16 22 H -0.02 -1.30 8.01 -2.39 -0.02 -1.32 16 23 H 0.25 16.68 7.22 -92.71 -0.67 16.01 16 24 H 0.33 10.56 8.05 -204.85 -1.65 8.91 16 25 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 26 H 0.09 1.95 7.78 -2.39 -0.02 1.93 16 27 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 29 H 0.07 2.60 8.10 -2.39 -0.02 2.58 16 30 H 0.04 1.92 8.14 -2.38 -0.02 1.90 16 Total: -1.00 -69.76 249.38 1.36 -68.40 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -0.45 Total: 10.81 kcal Atomic # 6 Polarization: -39.50 SS G_CDS: 3.17 Total: -36.33 kcal Atomic # 7 Polarization: -94.84 SS G_CDS: -3.41 Total: -98.24 kcal Atomic # 14 Polarization: 53.32 SS G_CDS: 2.05 Total: 55.37 kcal Total: -69.76 1.36 -68.40 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686775657.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.825 kcal (2) G-P(sol) polarization free energy of solvation -69.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds