Wall clock time and date at job start Mon Mar 30 2020 01:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09009 * 109.47154 * 2 1 4 4 C 1.52996 * 109.47347 * 119.99844 * 2 1 3 5 5 C 1.50702 * 109.47159 * 185.00014 * 4 2 1 6 6 H 1.08002 * 120.00299 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99942 * 179.72211 * 5 4 2 8 8 N 1.31514 * 119.99985 * 180.27663 * 7 5 4 9 9 Si 1.86800 * 119.99777 * 0.28166 * 7 5 4 10 10 H 1.48498 * 109.47109 * 89.99834 * 9 7 5 11 11 H 1.48507 * 109.46754 * 209.99574 * 9 7 5 12 12 H 1.48498 * 109.47278 * 329.99405 * 9 7 5 13 13 O 1.42894 * 109.47266 * 240.00471 * 2 1 3 14 14 C 1.42895 * 114.00648 * 89.99830 * 13 2 1 15 15 C 1.53784 * 113.61555 * 247.50283 * 14 13 2 16 16 C 1.53781 * 87.07912 * 220.01519 * 15 14 13 17 17 C 1.53781 * 87.08546 * 25.42928 * 16 15 14 18 18 H 1.09001 * 109.47340 * 180.02562 * 1 2 3 19 19 H 1.09003 * 109.47483 * 299.99629 * 1 2 3 20 20 H 1.09001 * 109.47295 * 60.00152 * 1 2 3 21 21 H 1.09004 * 109.47066 * 65.00217 * 4 2 1 22 22 H 1.08994 * 109.47405 * 305.00047 * 4 2 1 23 23 H 0.96996 * 119.99730 * 180.02562 * 8 7 5 24 24 H 1.09007 * 112.84769 * 18.79926 * 14 13 2 25 25 H 1.09000 * 113.60873 * 334.55696 * 15 14 13 26 26 H 1.08993 * 113.61619 * 105.46305 * 15 14 13 27 27 H 1.08999 * 113.61325 * 270.88089 * 16 15 14 28 28 H 1.09005 * 113.61645 * 139.98277 * 16 15 14 29 29 H 1.08993 * 113.61474 * 220.02632 * 17 16 15 30 30 H 1.09003 * 113.68855 * 89.12508 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5419 -0.6148 1.3126 6 1 4.0790 -0.0854 0.5395 7 6 4.2300 -1.1881 2.3611 8 7 5.5402 -1.0906 2.4193 9 14 3.3011 -2.1033 3.6986 10 1 3.1759 -3.5346 3.3235 11 1 4.0413 -1.9905 4.9811 12 1 1.9478 -1.5121 3.8545 13 8 2.0063 -0.6735 -1.1668 14 6 2.2000 0.1830 -2.2941 15 6 1.2204 -0.0869 -3.4484 16 6 2.4061 0.1353 -4.4021 17 6 3.3194 -0.2856 -3.2387 18 1 -0.3634 -1.0277 0.0005 19 1 -0.3634 0.5138 0.8900 20 1 -0.3634 0.5138 -0.8900 21 1 1.7517 -1.7715 1.2056 22 1 1.6054 -0.2617 2.1369 23 1 6.0242 -1.4942 3.1566 24 1 2.2730 1.2352 -2.0186 25 1 0.8332 -1.1056 -3.4632 26 1 0.4378 0.6660 -3.5419 27 1 2.5347 1.1747 -4.7042 28 1 2.4247 -0.5566 -5.2443 29 1 4.2311 0.3069 -3.1630 30 1 3.5069 -1.3585 -3.1951 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695796438.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:52 Heat of formation + Delta-G solvation = -60.572644 kcal Electronic energy + Delta-G solvation = -11416.567628 eV Core-core repulsion = 9404.410562 eV Total energy + Delta-G solvation = -2012.157066 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.18328 -37.57972 -34.95399 -32.92338 -29.70711 -26.49690 -25.75404 -24.58481 -21.89661 -20.46492 -18.90532 -17.96805 -16.69378 -16.17319 -15.72256 -15.13912 -14.74276 -14.19030 -13.65821 -13.57557 -13.33934 -13.22125 -12.93787 -12.53366 -12.25710 -12.04250 -11.80109 -11.61420 -11.31186 -11.28683 -11.10379 -10.75341 -10.09061 -8.26579 -6.28910 1.35735 1.37675 1.49221 2.37410 2.96924 3.13754 3.74485 3.78123 4.01985 4.03816 4.19666 4.39892 4.47244 4.58918 4.82397 4.87944 4.88416 5.05149 5.06148 5.06922 5.16639 5.22808 5.35430 5.39773 5.51734 5.67509 6.29725 6.67156 6.78153 7.33057 8.90761 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.052572 B = 0.010941 C = 0.009475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.480023 B = 2558.529616 C = 2954.427294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.096 3.904 3 H 0.044 0.956 4 C -0.014 4.014 5 C -0.516 4.516 6 H 0.026 0.974 7 C -0.002 4.002 8 N -0.955 5.955 9 Si 0.952 3.048 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.242 1.242 13 O -0.384 6.384 14 C 0.045 3.955 15 C -0.145 4.145 16 C -0.122 4.122 17 C -0.152 4.152 18 H 0.057 0.943 19 H 0.073 0.927 20 H 0.067 0.933 21 H 0.018 0.982 22 H 0.040 0.960 23 H 0.265 0.735 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.083 0.917 27 H 0.097 0.903 28 H 0.086 0.914 29 H 0.061 0.939 30 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.896 2.659 -9.126 14.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.039 3.961 3 H 0.062 0.938 4 C -0.051 4.051 5 C -0.554 4.554 6 H 0.045 0.955 7 C -0.197 4.197 8 N -0.596 5.596 9 Si 0.775 3.225 10 H -0.197 1.197 11 H -0.208 1.208 12 H -0.165 1.165 13 O -0.304 6.304 14 C -0.013 4.013 15 C -0.183 4.183 16 C -0.159 4.159 17 C -0.189 4.189 18 H 0.077 0.923 19 H 0.092 0.908 20 H 0.086 0.914 21 H 0.036 0.964 22 H 0.058 0.942 23 H 0.074 0.926 24 H 0.099 0.901 25 H 0.100 0.900 26 H 0.102 0.898 27 H 0.116 0.884 28 H 0.105 0.895 29 H 0.080 0.920 30 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.725 2.425 -9.030 14.229 hybrid contribution 0.450 -0.210 0.769 0.915 sum -10.275 2.215 -8.261 13.369 Atomic orbital electron populations 1.22251 0.94374 1.02548 1.02694 1.22121 0.93666 0.94767 0.85542 0.93771 1.19723 0.94586 0.96566 0.94275 1.21325 0.92264 1.34094 1.07709 0.95538 1.26046 0.95686 0.97113 1.00886 1.70079 1.08591 1.47386 1.33531 0.85631 0.79860 0.79170 0.77800 1.19690 1.20794 1.16514 1.87969 1.86283 1.35695 1.20427 1.24009 0.97677 0.94060 0.85577 1.23416 0.97373 1.02683 0.94812 1.22627 0.94666 1.02730 0.95892 1.23271 0.97664 1.01534 0.96455 0.92347 0.90760 0.91368 0.96398 0.94165 0.92649 0.90129 0.90038 0.89794 0.88449 0.89515 0.92003 0.90972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.03 9.53 71.98 0.69 -4.35 16 2 C 0.10 4.00 2.66 30.59 0.08 4.08 16 3 H 0.04 1.85 7.42 -2.38 -0.02 1.83 16 4 C -0.01 -0.70 3.75 29.85 0.11 -0.59 16 5 C -0.52 -31.21 9.43 25.60 0.24 -30.97 16 6 H 0.03 1.78 7.99 -2.91 -0.02 1.76 16 7 C 0.00 -0.09 5.47 84.66 0.46 0.37 16 8 N -0.95 -62.01 13.96 21.45 0.30 -61.71 16 9 Si 0.95 45.71 27.47 68.60 1.88 47.60 16 10 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 11 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 12 H -0.24 -10.56 6.54 99.48 0.65 -9.91 16 13 O -0.38 -16.61 9.75 -148.98 -1.45 -18.06 16 14 C 0.04 1.52 4.27 31.12 0.13 1.66 16 15 C -0.15 -3.70 7.91 31.12 0.25 -3.45 16 16 C -0.12 -2.76 8.08 31.12 0.25 -2.51 16 17 C -0.15 -4.82 7.91 31.12 0.25 -4.57 16 18 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 19 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 20 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 21 H 0.02 0.88 7.58 -2.38 -0.02 0.86 16 22 H 0.04 1.87 7.19 -2.39 -0.02 1.85 16 23 H 0.26 16.00 8.31 -92.71 -0.77 15.23 16 24 H 0.08 2.65 7.45 -2.38 -0.02 2.63 16 25 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 26 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.09 1.68 8.14 -2.38 -0.02 1.66 16 29 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 Total: -1.00 -69.51 250.16 4.22 -65.29 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: 1.02 Total: 7.21 kcal Atomic # 6 Polarization: -42.79 SS G_CDS: 2.46 Total: -40.33 kcal Atomic # 7 Polarization: -62.01 SS G_CDS: 0.30 Total: -61.71 kcal Atomic # 8 Polarization: -16.61 SS G_CDS: -1.45 Total: -18.06 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 1.88 Total: 47.60 kcal Total: -69.51 4.22 -65.29 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695796438.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.718 kcal (2) G-P(sol) polarization free energy of solvation -69.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds