Wall clock time and date at job start Mon Mar 30 2020 01:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09000 * 109.47391 * 2 1 4 4 C 1.53001 * 109.47435 * 240.00071 * 2 1 3 5 5 C 1.50693 * 109.47485 * 174.99894 * 4 2 1 6 6 H 1.07998 * 119.99906 * 0.02562 * 5 4 2 7 7 C 1.37880 * 120.00090 * 180.02562 * 5 4 2 8 8 N 1.31506 * 119.99908 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99925 * 179.97438 * 7 5 4 10 10 H 1.48510 * 109.47233 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.47144 * 119.99811 * 9 7 5 12 12 H 1.48499 * 109.47213 * 239.99944 * 9 7 5 13 13 O 1.42901 * 109.47262 * 119.99834 * 2 1 3 14 14 C 1.42895 * 114.00313 * 270.00399 * 13 2 1 15 15 C 1.53003 * 109.47298 * 180.02562 * 14 13 2 16 16 C 1.53001 * 117.51964 * 116.28202 * 15 14 13 17 17 C 1.52999 * 60.00190 * 107.47982 * 16 15 14 18 18 H 1.09000 * 109.47391 * 179.97438 * 1 2 3 19 19 H 1.09000 * 109.47340 * 299.99514 * 1 2 3 20 20 H 1.09001 * 109.47741 * 60.00184 * 1 2 3 21 21 H 1.08997 * 109.46811 * 295.00201 * 4 2 1 22 22 H 1.08997 * 109.46602 * 54.99852 * 4 2 1 23 23 H 0.97002 * 120.00075 * 180.02562 * 8 7 5 24 24 H 1.08999 * 109.47440 * 59.99511 * 14 13 2 25 25 H 1.09005 * 109.46905 * 299.99670 * 14 13 2 26 26 H 1.09002 * 115.54973 * 330.57985 * 15 14 13 27 27 H 1.09001 * 117.49733 * 214.97413 * 16 15 14 28 28 H 1.08995 * 117.49577 * 359.97438 * 16 15 14 29 29 H 1.09004 * 117.50150 * 252.51496 * 17 16 15 30 30 H 1.09004 * 117.49681 * 107.48417 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5418 -0.6149 -1.3127 6 1 4.0789 -0.0861 -0.5392 7 6 4.2303 -1.1926 -2.3584 8 7 3.5763 -1.8360 -3.3005 9 14 6.0919 -1.0601 -2.4374 10 1 6.5836 -0.2908 -1.2661 11 1 6.6862 -2.4210 -2.4200 12 1 6.4859 -0.3638 -3.6884 13 8 2.0063 -0.6736 1.1668 14 6 2.2000 0.1829 2.2941 15 6 2.7090 -0.6406 3.4788 16 6 4.1068 -0.3215 4.0130 17 6 2.8699 0.0767 4.8207 18 1 -0.3634 -1.0276 -0.0005 19 1 -0.3634 0.5137 0.8900 20 1 -0.3634 0.5138 -0.8900 21 1 1.7516 -1.7714 -1.2056 22 1 1.6054 -0.2617 -2.1369 23 1 4.0606 -2.2427 -4.0360 24 1 1.2537 0.6547 2.5589 25 1 2.9319 0.9513 2.0450 26 1 2.3877 -1.6820 3.5002 27 1 4.7051 -1.1530 4.3857 28 1 4.6642 0.4749 3.5201 29 1 2.6134 1.1355 4.8593 30 1 2.6544 -0.4928 5.7248 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695798029.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:55 Heat of formation + Delta-G solvation = -59.710791 kcal Electronic energy + Delta-G solvation = -11197.370460 eV Core-core repulsion = 9185.250767 eV Total energy + Delta-G solvation = -2012.119693 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.50975 -37.70873 -35.18661 -32.97866 -29.29703 -27.81806 -25.11008 -23.23607 -22.04780 -21.34739 -18.51133 -17.80578 -16.82624 -16.43351 -15.84983 -15.24816 -14.71493 -14.15505 -13.77928 -13.59177 -13.31063 -13.09699 -12.64390 -12.48274 -12.37729 -12.24192 -11.85247 -11.40275 -11.33734 -11.13993 -10.98287 -10.57759 -10.13624 -8.18986 -6.27535 1.37656 1.38990 1.52023 2.41326 2.71019 3.05585 3.16822 3.92927 3.98379 4.13275 4.25411 4.37322 4.42198 4.56813 4.61517 4.75233 4.77730 4.88225 5.01417 5.17789 5.24159 5.25094 5.27144 5.44375 5.53746 5.80343 6.24121 6.63510 6.85405 7.39351 8.93445 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.034385 B = 0.011506 C = 0.008960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.113579 B = 2432.892019 C = 3124.099019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.096 3.904 3 H 0.050 0.950 4 C 0.024 3.976 5 C -0.524 4.524 6 H 0.052 0.948 7 C -0.003 4.003 8 N -0.935 5.935 9 Si 0.963 3.037 10 H -0.265 1.265 11 H -0.279 1.279 12 H -0.274 1.274 13 O -0.396 6.396 14 C 0.089 3.911 15 C -0.174 4.174 16 C -0.186 4.186 17 C -0.147 4.147 18 H 0.051 0.949 19 H 0.070 0.930 20 H 0.069 0.931 21 H -0.008 1.008 22 H 0.014 0.986 23 H 0.263 0.737 24 H 0.061 0.939 25 H 0.038 0.962 26 H 0.100 0.900 27 H 0.101 0.899 28 H 0.090 0.910 29 H 0.106 0.894 30 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.911 5.184 12.920 14.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.038 3.962 3 H 0.068 0.932 4 C -0.013 4.013 5 C -0.562 4.562 6 H 0.071 0.929 7 C -0.200 4.200 8 N -0.576 5.576 9 Si 0.788 3.212 10 H -0.189 1.189 11 H -0.205 1.205 12 H -0.200 1.200 13 O -0.316 6.316 14 C 0.012 3.988 15 C -0.192 4.192 16 C -0.223 4.223 17 C -0.184 4.184 18 H 0.070 0.930 19 H 0.089 0.911 20 H 0.088 0.912 21 H 0.010 0.990 22 H 0.032 0.968 23 H 0.072 0.928 24 H 0.079 0.921 25 H 0.057 0.943 26 H 0.119 0.881 27 H 0.119 0.881 28 H 0.108 0.892 29 H 0.125 0.875 30 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -1.855 4.905 12.773 13.808 hybrid contribution 0.805 -0.043 -0.580 0.993 sum -1.050 4.862 12.193 13.169 Atomic orbital electron populations 1.22216 0.95117 1.02138 1.02482 1.22150 0.93327 0.95106 0.85567 0.93197 1.19146 0.95522 0.94819 0.91782 1.21517 0.93342 1.33912 1.07464 0.92935 1.25938 1.03724 0.94990 0.95353 1.70089 1.37471 1.37198 1.12853 0.85426 0.79507 0.78007 0.78283 1.18899 1.20506 1.19972 1.87939 1.87042 1.36107 1.20467 1.22100 0.99053 0.92082 0.85520 1.22139 1.01762 1.00693 0.94641 1.23123 0.90994 1.03858 1.04352 1.23063 1.00255 1.01593 0.93467 0.93028 0.91104 0.91157 0.98950 0.96772 0.92799 0.92065 0.94331 0.88146 0.88063 0.89185 0.87528 0.86665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.70 9.53 71.98 0.69 -5.01 16 2 C 0.10 4.21 2.67 30.59 0.08 4.30 16 3 H 0.05 2.11 7.79 -2.39 -0.02 2.10 16 4 C 0.02 1.35 4.68 29.85 0.14 1.49 16 5 C -0.52 -31.25 8.88 25.60 0.23 -31.03 16 6 H 0.05 3.08 7.74 -2.91 -0.02 3.06 16 7 C 0.00 -0.18 5.46 84.66 0.46 0.28 16 8 N -0.94 -58.51 13.29 21.45 0.28 -58.23 16 9 Si 0.96 45.99 29.54 68.60 2.03 48.02 16 10 H -0.26 -12.17 7.11 99.48 0.71 -11.46 16 11 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 12 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 13 O -0.40 -17.49 9.74 -148.98 -1.45 -18.94 16 14 C 0.09 3.00 6.03 71.98 0.43 3.44 16 15 C -0.17 -5.10 6.06 -10.79 -0.07 -5.16 16 16 C -0.19 -4.77 10.18 30.59 0.31 -4.46 16 17 C -0.15 -3.05 10.25 30.60 0.31 -2.74 16 18 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 19 H 0.07 2.05 7.87 -2.39 -0.02 2.03 16 20 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 21 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 22 H 0.01 0.81 8.14 -2.39 -0.02 0.79 16 23 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 24 H 0.06 1.77 7.87 -2.39 -0.02 1.75 16 25 H 0.04 1.32 7.82 -2.38 -0.02 1.30 16 26 H 0.10 3.12 8.14 -2.39 -0.02 3.10 16 27 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 28 H 0.09 2.37 8.03 -2.39 -0.02 2.35 16 29 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.12 1.92 8.14 -2.38 -0.02 1.90 16 Total: -1.00 -67.35 258.18 4.53 -62.82 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: 1.08 Total: 5.22 kcal Atomic # 6 Polarization: -41.48 SS G_CDS: 2.59 Total: -38.89 kcal Atomic # 7 Polarization: -58.51 SS G_CDS: 0.28 Total: -58.23 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: -1.45 Total: -18.94 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Total: -67.35 4.53 -62.82 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695798029.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.106 kcal (2) G-P(sol) polarization free energy of solvation -67.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds