Wall clock time and date at job start Mon Mar 30 2020 01:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.47109 * 2 1 4 4 C 1.53003 * 109.47076 * 119.99936 * 2 1 3 5 5 C 1.50696 * 109.47186 * 185.00064 * 4 2 1 6 6 H 1.07998 * 120.00345 * 0.02562 * 5 4 2 7 7 C 1.37884 * 120.00165 * 179.97438 * 5 4 2 8 8 N 1.31520 * 119.99793 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00254 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.46872 * 60.00038 * 9 7 5 11 11 H 1.48497 * 109.47359 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47259 * 300.00395 * 9 7 5 13 13 O 1.42892 * 109.47370 * 239.99706 * 2 1 3 14 14 C 1.42904 * 113.99807 * 90.00175 * 13 2 1 15 15 C 1.53006 * 109.47299 * 180.02562 * 14 13 2 16 16 C 1.53000 * 117.49776 * 174.99938 * 15 14 13 17 17 C 1.52997 * 117.49537 * 243.62392 * 15 14 13 18 18 H 1.09002 * 109.47109 * 180.02562 * 1 2 3 19 19 H 1.08997 * 109.47026 * 299.99854 * 1 2 3 20 20 H 1.08997 * 109.46809 * 60.00113 * 1 2 3 21 21 H 1.09004 * 109.47295 * 305.00088 * 4 2 1 22 22 H 1.09001 * 109.47000 * 64.99923 * 4 2 1 23 23 H 0.96990 * 119.99683 * 179.97438 * 8 7 5 24 24 H 1.08997 * 109.47235 * 60.00354 * 14 13 2 25 25 H 1.09003 * 109.47065 * 299.99881 * 14 13 2 26 26 H 1.09002 * 115.56020 * 29.30521 * 15 14 13 27 27 H 1.08990 * 117.49990 * 359.97438 * 16 15 14 28 28 H 1.09004 * 117.49237 * 214.97568 * 16 15 14 29 29 H 1.08999 * 117.49685 * 145.02116 * 17 15 14 30 30 H 1.08997 * 117.50044 * 359.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5419 -0.6149 1.3128 6 1 4.0790 -0.0855 0.5397 7 6 4.2304 -1.1926 2.3585 8 7 3.5763 -1.8369 3.3002 9 14 6.0921 -1.0615 2.4368 10 1 6.4854 0.3693 2.4953 11 1 6.5871 -1.7614 3.6494 12 1 6.6838 -1.6884 1.2277 13 8 2.0064 -0.6736 -1.1667 14 6 2.2002 0.1829 -2.2940 15 6 2.7081 -0.6408 -3.4791 16 6 2.8668 0.0761 -4.8214 17 6 4.1050 -0.3207 -4.0149 18 1 -0.3633 -1.0277 0.0005 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 1.6054 -0.2617 2.1370 22 1 1.7516 -1.7715 1.2056 23 1 4.0607 -2.2436 4.0355 24 1 2.9321 0.9513 -2.0449 25 1 1.2539 0.6546 -2.5588 26 1 2.3876 -1.6825 -3.4996 27 1 2.6090 1.1344 -4.8603 28 1 2.6508 -0.4940 -5.7250 29 1 4.7035 -1.1518 -4.3880 30 1 4.6620 0.4769 -3.5234 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695798031.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:58 Heat of formation + Delta-G solvation = -40.759299 kcal Electronic energy + Delta-G solvation = -11195.917182 eV Core-core repulsion = 9184.619287 eV Total energy + Delta-G solvation = -2011.297895 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.04635 -36.38968 -33.06199 -31.13225 -27.32741 -26.44010 -23.03727 -22.24687 -20.55720 -19.82334 -16.35478 -16.21347 -15.32985 -14.57374 -14.37805 -13.89365 -13.07834 -12.57391 -11.93124 -11.85378 -11.62379 -11.42014 -11.25486 -10.71879 -10.65053 -10.60116 -10.24850 -10.17003 -9.79322 -9.34186 -9.09219 -8.51768 -8.29079 -5.92207 -3.92171 3.38699 3.42404 3.45818 3.88926 4.39105 4.53090 5.02874 5.08518 5.35280 5.45884 5.63424 5.69916 5.80137 5.88346 5.94936 6.03151 6.08534 6.15547 6.22915 6.36512 6.48334 6.78879 6.98111 7.59229 7.72201 8.05628 8.25368 8.50899 9.11594 9.69670 11.19606 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.034395 B = 0.011503 C = 0.008959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.884566 B = 2433.587895 C = 3124.547208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.091 3.909 3 H 0.045 0.955 4 C 0.024 3.976 5 C -0.506 4.506 6 H 0.054 0.946 7 C 0.054 3.946 8 N -0.900 5.900 9 Si 0.892 3.108 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.277 1.277 13 O -0.366 6.366 14 C 0.092 3.908 15 C -0.144 4.144 16 C -0.181 4.181 17 C -0.177 4.177 18 H 0.057 0.943 19 H 0.059 0.941 20 H 0.040 0.960 21 H 0.030 0.970 22 H 0.025 0.975 23 H 0.260 0.740 24 H 0.043 0.957 25 H 0.039 0.961 26 H 0.111 0.889 27 H 0.091 0.909 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.410 4.198 -11.355 12.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.034 3.966 3 H 0.063 0.937 4 C -0.013 4.013 5 C -0.544 4.544 6 H 0.072 0.928 7 C -0.146 4.146 8 N -0.540 5.540 9 Si 0.720 3.280 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.202 1.202 13 O -0.285 6.285 14 C 0.015 3.985 15 C -0.162 4.162 16 C -0.219 4.219 17 C -0.214 4.214 18 H 0.077 0.923 19 H 0.078 0.922 20 H 0.059 0.941 21 H 0.048 0.952 22 H 0.044 0.956 23 H 0.069 0.931 24 H 0.062 0.938 25 H 0.058 0.942 26 H 0.129 0.871 27 H 0.110 0.890 28 H 0.111 0.889 29 H 0.111 0.889 30 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.348 3.900 -11.186 12.077 hybrid contribution 0.981 0.286 0.104 1.028 sum -1.367 4.187 -11.082 11.925 Atomic orbital electron populations 1.22333 0.98218 1.01904 1.00472 1.22386 0.90950 0.96092 0.87216 0.93656 1.19244 0.96252 0.96372 0.89461 1.21106 0.91949 1.33918 1.07432 0.92781 1.24998 0.98286 0.95515 0.95819 1.69949 1.35487 1.36332 1.12201 0.86659 0.85981 0.78072 0.77300 1.20392 1.21372 1.20238 1.87999 1.86648 1.34382 1.19449 1.21884 0.97958 0.92241 0.86398 1.22158 0.99937 1.00889 0.93246 1.22943 1.03264 1.00878 0.94770 1.23023 0.91036 1.03512 1.03826 0.92348 0.92198 0.94138 0.95219 0.95627 0.93050 0.93835 0.94245 0.87076 0.89026 0.88867 0.88875 0.88713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.12 9.53 37.16 0.35 -2.77 16 2 C 0.09 2.00 2.67 -26.73 -0.07 1.93 16 3 H 0.05 0.97 7.79 -51.93 -0.40 0.56 16 4 C 0.02 0.63 4.68 -27.88 -0.13 0.50 16 5 C -0.51 -14.81 8.88 -34.44 -0.31 -15.12 16 6 H 0.05 1.56 7.74 -52.49 -0.41 1.16 16 7 C 0.05 1.60 5.46 -17.81 -0.10 1.50 16 8 N -0.90 -27.68 13.29 55.43 0.74 -26.94 16 9 Si 0.89 22.35 29.54 -169.99 -5.02 17.33 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 12 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 13 O -0.37 -8.07 9.74 -35.23 -0.34 -8.42 16 14 C 0.09 1.61 6.03 37.16 0.22 1.84 16 15 C -0.14 -2.21 6.06 -90.62 -0.55 -2.76 16 16 C -0.18 -2.17 10.25 -26.73 -0.27 -2.45 16 17 C -0.18 -2.42 10.18 -26.73 -0.27 -2.69 16 18 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 19 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 20 H 0.04 0.64 7.87 -51.93 -0.41 0.23 16 21 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 22 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 23 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 24 H 0.04 0.76 7.82 -51.93 -0.41 0.36 16 25 H 0.04 0.62 7.87 -51.93 -0.41 0.21 16 26 H 0.11 1.75 8.14 -51.93 -0.42 1.33 16 27 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.09 1.30 8.03 -51.93 -0.42 0.88 16 LS Contribution 258.18 15.07 3.89 3.89 Total: -1.00 -31.12 258.18 -6.83 -37.95 By element: Atomic # 1 Polarization: 1.17 SS G_CDS: -4.97 Total: -3.80 kcal Atomic # 6 Polarization: -18.89 SS G_CDS: -1.12 Total: -20.01 kcal Atomic # 7 Polarization: -27.68 SS G_CDS: 0.74 Total: -26.94 kcal Atomic # 8 Polarization: -8.07 SS G_CDS: -0.34 Total: -8.42 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -31.12 -6.83 -37.95 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695798031.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.810 kcal (2) G-P(sol) polarization free energy of solvation -31.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds