Wall clock time and date at job start Mon Mar 30 2020 01:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.47109 * 2 1 4 4 C 1.53003 * 109.47076 * 119.99936 * 2 1 3 5 5 C 1.50696 * 109.47186 * 185.00064 * 4 2 1 6 6 H 1.07998 * 120.00345 * 0.02562 * 5 4 2 7 7 C 1.37884 * 120.00165 * 179.97438 * 5 4 2 8 8 N 1.31520 * 119.99793 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00254 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.46872 * 60.00038 * 9 7 5 11 11 H 1.48497 * 109.47359 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47259 * 300.00395 * 9 7 5 13 13 O 1.42892 * 109.47370 * 239.99706 * 2 1 3 14 14 C 1.42904 * 113.99807 * 90.00175 * 13 2 1 15 15 C 1.53006 * 109.47299 * 180.02562 * 14 13 2 16 16 C 1.53000 * 117.49776 * 174.99938 * 15 14 13 17 17 C 1.52997 * 117.49537 * 243.62392 * 15 14 13 18 18 H 1.09002 * 109.47109 * 180.02562 * 1 2 3 19 19 H 1.08997 * 109.47026 * 299.99854 * 1 2 3 20 20 H 1.08997 * 109.46809 * 60.00113 * 1 2 3 21 21 H 1.09004 * 109.47295 * 305.00088 * 4 2 1 22 22 H 1.09001 * 109.47000 * 64.99923 * 4 2 1 23 23 H 0.96990 * 119.99683 * 179.97438 * 8 7 5 24 24 H 1.08997 * 109.47235 * 60.00354 * 14 13 2 25 25 H 1.09003 * 109.47065 * 299.99881 * 14 13 2 26 26 H 1.09002 * 115.56020 * 29.30521 * 15 14 13 27 27 H 1.08990 * 117.49990 * 359.97438 * 16 15 14 28 28 H 1.09004 * 117.49237 * 214.97568 * 16 15 14 29 29 H 1.08999 * 117.49685 * 145.02116 * 17 15 14 30 30 H 1.08997 * 117.50044 * 359.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5419 -0.6149 1.3128 6 1 4.0790 -0.0855 0.5397 7 6 4.2304 -1.1926 2.3585 8 7 3.5763 -1.8369 3.3002 9 14 6.0921 -1.0615 2.4368 10 1 6.4854 0.3693 2.4953 11 1 6.5871 -1.7614 3.6494 12 1 6.6838 -1.6884 1.2277 13 8 2.0064 -0.6736 -1.1667 14 6 2.2002 0.1829 -2.2940 15 6 2.7081 -0.6408 -3.4791 16 6 2.8668 0.0761 -4.8214 17 6 4.1050 -0.3207 -4.0149 18 1 -0.3633 -1.0277 0.0005 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 1.6054 -0.2617 2.1370 22 1 1.7516 -1.7715 1.2056 23 1 4.0607 -2.2436 4.0355 24 1 2.9321 0.9513 -2.0449 25 1 1.2539 0.6546 -2.5588 26 1 2.3876 -1.6825 -3.4996 27 1 2.6090 1.1344 -4.8603 28 1 2.6508 -0.4940 -5.7250 29 1 4.7035 -1.1518 -4.3880 30 1 4.6620 0.4769 -3.5234 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695798031.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:57 Heat of formation + Delta-G solvation = -59.576539 kcal Electronic energy + Delta-G solvation = -11196.733159 eV Core-core repulsion = 9184.619287 eV Total energy + Delta-G solvation = -2012.113871 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.50922 -37.70886 -35.18181 -32.97602 -29.29377 -27.81689 -25.10564 -23.23637 -22.04694 -21.34659 -18.50329 -17.80540 -16.82429 -16.43472 -15.84963 -15.25093 -14.70523 -14.15266 -13.76671 -13.59747 -13.30297 -13.09868 -12.60491 -12.51413 -12.38461 -12.23313 -11.85178 -11.41208 -11.35042 -11.13718 -10.98671 -10.56469 -10.13493 -8.18436 -6.27188 1.37934 1.41982 1.49609 2.41698 2.71090 3.05687 3.17120 3.92975 3.98427 4.13261 4.25455 4.37346 4.42230 4.56847 4.61530 4.75347 4.77781 4.88231 5.01409 5.17815 5.24180 5.25083 5.27151 5.44302 5.53728 5.80356 6.24257 6.63606 6.85327 7.39528 8.93594 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.034395 B = 0.011503 C = 0.008959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.884566 B = 2433.587895 C = 3124.547208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.096 3.904 3 H 0.050 0.950 4 C 0.025 3.975 5 C -0.526 4.526 6 H 0.053 0.947 7 C -0.003 4.003 8 N -0.935 5.935 9 Si 0.963 3.037 10 H -0.265 1.265 11 H -0.281 1.281 12 H -0.272 1.272 13 O -0.396 6.396 14 C 0.089 3.911 15 C -0.174 4.174 16 C -0.147 4.147 17 C -0.186 4.186 18 H 0.050 0.950 19 H 0.069 0.931 20 H 0.070 0.930 21 H 0.014 0.986 22 H -0.008 1.008 23 H 0.263 0.737 24 H 0.039 0.961 25 H 0.061 0.939 26 H 0.100 0.900 27 H 0.107 0.893 28 H 0.115 0.885 29 H 0.101 0.899 30 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.886 5.207 -12.905 14.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.039 3.961 3 H 0.068 0.932 4 C -0.012 4.012 5 C -0.564 4.564 6 H 0.071 0.929 7 C -0.200 4.200 8 N -0.576 5.576 9 Si 0.787 3.213 10 H -0.189 1.189 11 H -0.206 1.206 12 H -0.197 1.197 13 O -0.316 6.316 14 C 0.012 3.988 15 C -0.192 4.192 16 C -0.184 4.184 17 C -0.223 4.223 18 H 0.070 0.930 19 H 0.088 0.912 20 H 0.089 0.911 21 H 0.032 0.968 22 H 0.010 0.990 23 H 0.072 0.928 24 H 0.057 0.943 25 H 0.079 0.921 26 H 0.118 0.882 27 H 0.125 0.875 28 H 0.133 0.867 29 H 0.119 0.881 30 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.832 4.922 -12.751 13.791 hybrid contribution 0.804 -0.037 0.560 0.981 sum -1.028 4.885 -12.191 13.174 Atomic orbital electron populations 1.22218 0.95129 1.02131 1.02480 1.22151 0.93321 0.95108 0.85568 0.93182 1.19138 0.95498 0.94798 0.91773 1.21464 0.93354 1.34079 1.07551 0.92915 1.25943 1.03736 0.94962 0.95330 1.70080 1.37630 1.37053 1.12827 0.85537 0.79425 0.78772 0.77548 1.18942 1.20583 1.19677 1.87941 1.87039 1.36108 1.20472 1.22104 0.99072 0.92083 0.85507 1.22139 1.01796 1.00677 0.94635 1.23061 1.00257 1.01605 0.93458 1.23126 0.90989 1.03854 1.04354 0.93036 0.91162 0.91102 0.96799 0.98981 0.92791 0.94265 0.92080 0.88183 0.87510 0.86692 0.88100 0.89119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.70 9.53 71.98 0.69 -5.01 16 2 C 0.10 4.21 2.67 30.60 0.08 4.30 16 3 H 0.05 2.12 7.79 -2.39 -0.02 2.10 16 4 C 0.02 1.38 4.68 29.85 0.14 1.52 16 5 C -0.53 -31.38 8.88 25.60 0.23 -31.15 16 6 H 0.05 3.08 7.74 -2.91 -0.02 3.05 16 7 C 0.00 -0.16 5.46 84.66 0.46 0.31 16 8 N -0.94 -58.56 13.29 21.45 0.28 -58.27 16 9 Si 0.96 45.93 29.54 68.60 2.03 47.95 16 10 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 11 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 12 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 13 O -0.40 -17.49 9.74 -148.98 -1.45 -18.94 16 14 C 0.09 3.00 6.03 71.98 0.43 3.43 16 15 C -0.17 -5.10 6.06 -10.79 -0.07 -5.17 16 16 C -0.15 -3.05 10.25 30.60 0.31 -2.74 16 17 C -0.19 -4.76 10.18 30.60 0.31 -4.45 16 18 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 19 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 20 H 0.07 2.05 7.87 -2.39 -0.02 2.03 16 21 H 0.01 0.79 8.14 -2.38 -0.02 0.77 16 22 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 23 H 0.26 15.48 8.31 -92.72 -0.77 14.71 16 24 H 0.04 1.33 7.82 -2.39 -0.02 1.31 16 25 H 0.06 1.76 7.87 -2.39 -0.02 1.74 16 26 H 0.10 3.12 8.14 -2.39 -0.02 3.10 16 27 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.11 1.92 8.14 -2.38 -0.02 1.90 16 29 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 30 H 0.09 2.37 8.03 -2.39 -0.02 2.35 16 Total: -1.00 -67.29 258.18 4.53 -62.77 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: 1.08 Total: 5.46 kcal Atomic # 6 Polarization: -41.55 SS G_CDS: 2.59 Total: -38.96 kcal Atomic # 7 Polarization: -58.56 SS G_CDS: 0.28 Total: -58.27 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: -1.45 Total: -18.94 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.95 kcal Total: -67.29 4.53 -62.77 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695798031.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.189 kcal (2) G-P(sol) polarization free energy of solvation -67.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds