Wall clock time and date at job start Mon Mar 30 2020 02:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.46988 * 2 1 4 4 C 1.52998 * 109.47130 * 239.99961 * 2 1 3 5 5 C 1.50699 * 109.47210 * 174.85623 * 4 2 1 6 6 H 1.08006 * 119.99787 * 5.01478 * 5 4 2 7 7 C 1.37876 * 120.00372 * 185.01305 * 5 4 2 8 8 N 1.31507 * 120.00289 * 180.02562 * 7 5 4 9 9 Si 1.86807 * 119.99659 * 0.02562 * 7 5 4 10 10 H 1.48499 * 109.47236 * 89.99572 * 9 7 5 11 11 H 1.48502 * 109.46920 * 210.00139 * 9 7 5 12 12 H 1.48501 * 109.46754 * 329.99646 * 9 7 5 13 13 N 1.46899 * 109.46811 * 119.99735 * 2 1 3 14 14 C 1.47991 * 111.00342 * 61.56894 * 13 2 1 15 15 C 1.55046 * 103.72533 * 214.83650 * 14 13 2 16 16 C 1.55051 * 101.26702 * 35.62387 * 15 14 13 17 17 N 1.45769 * 111.00161 * 300.79439 * 13 2 1 18 18 H 1.09000 * 109.47418 * 180.02562 * 1 2 3 19 19 H 1.09001 * 109.46961 * 300.00089 * 1 2 3 20 20 H 1.08999 * 109.47412 * 59.99985 * 1 2 3 21 21 H 1.09002 * 109.46638 * 294.85608 * 4 2 1 22 22 H 1.08997 * 109.47597 * 54.85137 * 4 2 1 23 23 H 0.97000 * 119.99900 * 180.02562 * 8 7 5 24 24 H 1.09009 * 110.57269 * 333.39478 * 14 13 2 25 25 H 1.09006 * 110.57838 * 96.27005 * 14 13 2 26 26 H 1.09003 * 111.05899 * 277.62979 * 15 14 13 27 27 H 1.09000 * 111.07044 * 153.62611 * 15 14 13 28 28 H 1.08996 * 110.57856 * 205.81950 * 16 15 14 29 29 H 1.09001 * 110.57326 * 82.92838 * 16 15 14 30 30 H 1.00900 * 110.99916 * 0.02562 * 17 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5416 -0.6119 -1.3146 6 1 4.0854 -0.1522 -0.5025 7 6 4.2213 -1.0987 -2.4110 8 7 5.5317 -1.0037 -2.4678 9 14 3.2806 -1.8932 -3.8158 10 1 2.9137 -0.8570 -4.8144 11 1 4.1327 -2.9236 -4.4618 12 1 2.0475 -2.5304 -3.2879 13 7 2.0196 -0.6924 1.1995 14 6 1.5762 -2.1043 1.2150 15 6 1.3362 -2.3980 2.7184 16 6 0.7822 -1.0353 3.2086 17 7 1.5368 -0.0424 2.4116 18 1 -0.3634 -1.0276 0.0005 19 1 -0.3633 0.5139 0.8900 20 1 -0.3634 0.5138 -0.8900 21 1 1.7538 -1.7721 -1.2043 22 1 1.6034 -0.2635 -2.1368 23 1 6.0097 -1.3458 -3.2393 24 1 0.6518 -2.2217 0.6494 25 1 2.3551 -2.7549 0.8171 26 1 2.2701 -2.6456 3.2231 27 1 0.5996 -3.1906 2.8501 28 1 0.9790 -0.9020 4.2723 29 1 -0.2856 -0.9596 3.0030 30 1 0.9607 0.7555 2.1891 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695860511.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:13 Heat of formation + Delta-G solvation = 12.813756 kcal Electronic energy + Delta-G solvation = -11748.626184 eV Core-core repulsion = 9771.944142 eV Total energy + Delta-G solvation = -1976.682041 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.32129 -35.96878 -34.18882 -31.40719 -30.30716 -29.45065 -25.06831 -23.68201 -22.45699 -20.62932 -18.81755 -17.77744 -16.62014 -16.40773 -15.67575 -14.93767 -14.85640 -14.16787 -14.07974 -13.67704 -13.28862 -13.26064 -12.78119 -12.59567 -12.29570 -12.13927 -11.98734 -11.67715 -11.42765 -11.29093 -10.70742 -10.24705 -8.77475 -8.19641 -6.20886 1.35583 1.37547 1.48469 2.39704 2.69151 3.15077 3.50529 3.78901 3.93274 4.05503 4.19610 4.26529 4.43255 4.50242 4.71258 4.83166 4.92315 4.95907 5.03492 5.04960 5.08480 5.24941 5.50213 5.67967 5.81060 6.35809 6.42676 6.75172 6.89667 7.40458 8.97957 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.055782 B = 0.011977 C = 0.011507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.830299 B = 2337.172344 C = 2432.661101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.057 3.943 3 H 0.067 0.933 4 C 0.002 3.998 5 C -0.502 4.502 6 H 0.034 0.966 7 C -0.002 4.002 8 N -0.956 5.956 9 Si 0.948 3.052 10 H -0.267 1.267 11 H -0.288 1.288 12 H -0.249 1.249 13 N -0.342 5.342 14 C 0.008 3.992 15 C -0.122 4.122 16 C 0.017 3.983 17 N -0.517 5.517 18 H 0.060 0.940 19 H 0.064 0.936 20 H 0.074 0.926 21 H 0.019 0.981 22 H 0.026 0.974 23 H 0.262 0.738 24 H 0.058 0.942 25 H 0.067 0.933 26 H 0.073 0.927 27 H 0.103 0.897 28 H 0.104 0.896 29 H 0.057 0.943 30 H 0.324 0.676 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.278 -2.035 7.188 16.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.053 4.053 3 H 0.085 0.915 4 C -0.037 4.037 5 C -0.540 4.540 6 H 0.052 0.948 7 C -0.197 4.197 8 N -0.598 5.598 9 Si 0.771 3.229 10 H -0.193 1.193 11 H -0.214 1.214 12 H -0.172 1.172 13 N -0.156 5.156 14 C -0.121 4.121 15 C -0.160 4.160 16 C -0.113 4.113 17 N -0.237 5.237 18 H 0.079 0.921 19 H 0.083 0.917 20 H 0.093 0.907 21 H 0.037 0.963 22 H 0.044 0.956 23 H 0.071 0.929 24 H 0.076 0.924 25 H 0.086 0.914 26 H 0.091 0.909 27 H 0.121 0.879 28 H 0.122 0.878 29 H 0.076 0.924 30 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -12.973 -2.087 7.455 15.107 hybrid contribution -1.334 -0.318 -1.384 1.948 sum -14.307 -2.405 6.072 15.727 Atomic orbital electron populations 1.22433 0.95900 1.02343 1.03093 1.22252 0.92947 0.98558 0.91547 0.91526 1.19552 0.94772 0.95803 0.93533 1.21309 0.91996 1.37141 1.03566 0.94802 1.25997 0.95592 0.96741 1.01370 1.70090 1.08851 1.49350 1.31502 0.85706 0.79221 0.78727 0.79197 1.19260 1.21370 1.17223 1.68574 1.49495 1.00748 0.96832 1.23630 0.99573 0.90942 0.97982 1.22865 1.02224 0.97624 0.93298 1.23488 0.96218 0.91614 0.99976 1.66924 1.40310 1.07105 1.09379 0.92110 0.91683 0.90701 0.96288 0.95615 0.92874 0.92396 0.91441 0.90851 0.87862 0.87804 0.92423 0.85885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.18 8.76 71.98 0.63 -4.55 16 2 C 0.06 2.25 2.34 44.91 0.11 2.35 16 3 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 4 C 0.00 0.08 3.36 29.85 0.10 0.18 16 5 C -0.50 -29.64 9.39 25.60 0.24 -29.40 16 6 H 0.03 2.28 7.99 -2.91 -0.02 2.25 16 7 C 0.00 -0.10 5.47 84.66 0.46 0.36 16 8 N -0.96 -61.93 13.96 21.45 0.30 -61.63 16 9 Si 0.95 44.98 27.37 68.60 1.88 46.86 16 10 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 11 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 12 H -0.25 -10.85 6.69 99.48 0.67 -10.19 16 13 N -0.34 -13.58 5.46 -485.24 -2.65 -16.23 16 14 C 0.01 0.27 5.19 86.79 0.45 0.72 16 15 C -0.12 -3.16 7.20 32.00 0.23 -2.93 16 16 C 0.02 0.41 7.70 86.79 0.67 1.08 16 17 N -0.52 -16.72 7.72 -181.52 -1.40 -18.12 16 18 H 0.06 1.69 6.07 -2.39 -0.01 1.68 16 19 H 0.06 1.59 6.60 -2.39 -0.02 1.57 16 20 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 21 H 0.02 0.88 6.21 -2.39 -0.01 0.86 16 22 H 0.03 1.16 7.29 -2.39 -0.02 1.14 16 23 H 0.26 15.88 8.31 -92.71 -0.77 15.11 16 24 H 0.06 1.84 5.41 -2.38 -0.01 1.83 16 25 H 0.07 2.69 8.14 -2.38 -0.02 2.67 16 26 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 27 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 28 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 29 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.32 9.34 6.70 -204.58 -1.37 7.97 16 Total: -1.00 -69.27 236.40 0.72 -68.55 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -0.30 Total: 12.75 kcal Atomic # 6 Polarization: -35.07 SS G_CDS: 2.89 Total: -32.18 kcal Atomic # 7 Polarization: -92.23 SS G_CDS: -3.75 Total: -95.98 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 1.88 Total: 46.86 kcal Total: -69.27 0.72 -68.55 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695860511.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.366 kcal (2) G-P(sol) polarization free energy of solvation -69.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds