Wall clock time and date at job start Mon Mar 30 2020 02:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47193 * 2 1 4 4 C 1.53001 * 109.47197 * 120.00125 * 2 1 3 5 5 C 1.50694 * 109.47168 * 184.99933 * 4 2 1 6 6 H 1.08000 * 120.00563 * 359.97438 * 5 4 2 7 7 C 1.37885 * 119.99902 * 179.97438 * 5 4 2 8 8 N 1.31518 * 119.99792 * 179.72330 * 7 5 4 9 9 Si 1.86795 * 120.00009 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47088 * 89.99795 * 9 7 5 11 11 H 1.48495 * 109.47293 * 209.99997 * 9 7 5 12 12 H 1.48507 * 109.47015 * 329.99955 * 9 7 5 13 13 N 1.46900 * 109.47354 * 239.99978 * 2 1 3 14 14 C 1.47998 * 111.00147 * 65.64482 * 13 2 1 15 15 C 1.55051 * 103.72216 * 214.84104 * 14 13 2 16 16 C 1.55041 * 101.26514 * 35.62810 * 15 14 13 17 17 N 1.45771 * 111.00139 * 304.87877 * 13 2 1 18 18 H 1.09005 * 109.47168 * 59.99930 * 1 2 3 19 19 H 1.09000 * 109.47193 * 179.97438 * 1 2 3 20 20 H 1.08999 * 109.47050 * 300.00349 * 1 2 3 21 21 H 1.08998 * 109.46837 * 64.99954 * 4 2 1 22 22 H 1.09002 * 109.46926 * 304.99758 * 4 2 1 23 23 H 0.97000 * 119.99468 * 179.97438 * 8 7 5 24 24 H 1.09009 * 110.57469 * 333.40082 * 14 13 2 25 25 H 1.09000 * 110.57558 * 96.27842 * 14 13 2 26 26 H 1.09002 * 111.05936 * 277.62769 * 15 14 13 27 27 H 1.09000 * 111.06259 * 153.62893 * 15 14 13 28 28 H 1.09003 * 110.57618 * 205.81018 * 16 15 14 29 29 H 1.08999 * 110.57731 * 82.93206 * 16 15 14 30 30 H 1.00899 * 110.99937 * 244.46146 * 17 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.6150 1.3127 6 1 4.0790 -0.0862 0.5392 7 6 4.2303 -1.1927 2.3583 8 7 5.5415 -1.1046 2.4108 9 14 3.3014 -2.1079 3.6959 10 1 3.1708 -3.5380 3.3179 11 1 4.0446 -2.0003 4.9770 12 1 1.9502 -1.5128 3.8559 13 7 2.0197 -0.6925 -1.1994 14 6 1.6593 0.0526 -2.4263 15 6 1.3877 -1.0634 -3.4679 16 6 0.7392 -2.1558 -2.5792 17 7 1.4602 -2.0353 -1.2924 18 1 -0.3634 0.5139 -0.8900 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5139 0.8899 21 1 1.7516 -1.7715 1.2055 22 1 1.6054 -0.2617 2.1370 23 1 6.0257 -1.5108 3.1467 24 1 0.7624 0.6500 -2.2622 25 1 2.4876 0.6838 -2.7484 26 1 2.3174 -1.4200 -3.9114 27 1 0.6948 -0.7215 -4.2367 28 1 0.8927 -3.1438 -3.0132 29 1 -0.3239 -1.9574 -2.4427 30 1 2.1836 -2.7345 -1.2164 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695860513.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:16 Heat of formation + Delta-G solvation = 32.625866 kcal Electronic energy + Delta-G solvation = -11718.827729 eV Core-core repulsion = 9743.004805 eV Total energy + Delta-G solvation = -1975.822924 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.56757 -34.23103 -32.05300 -29.79190 -28.83652 -27.55705 -23.24550 -21.98757 -20.94093 -19.01871 -16.51059 -16.08992 -15.67750 -14.31532 -13.78836 -13.53306 -13.06071 -12.53832 -12.29754 -12.17657 -11.76374 -11.44342 -11.16387 -11.05082 -10.86758 -10.61895 -9.96039 -9.70452 -9.55914 -8.96507 -8.89347 -8.34369 -7.25431 -5.84434 -3.77711 3.43039 3.49601 3.54420 4.07309 4.61967 4.82802 4.98948 5.13892 5.46945 5.53100 5.61132 5.81291 5.87521 5.94746 5.99335 6.08874 6.18575 6.28046 6.50265 6.80358 6.94862 7.23340 7.52001 7.67748 7.86476 7.97330 8.06782 8.79584 9.26896 9.79548 11.29736 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.054137 B = 0.012054 C = 0.011588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.079814 B = 2322.230596 C = 2415.611320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.100 3.900 3 H 0.073 0.927 4 C -0.002 4.002 5 C -0.491 4.491 6 H 0.075 0.925 7 C 0.060 3.940 8 N -0.912 5.912 9 Si 0.877 3.123 10 H -0.280 1.280 11 H -0.292 1.292 12 H -0.268 1.268 13 N -0.343 5.343 14 C 0.016 3.984 15 C -0.153 4.153 16 C 0.028 3.972 17 N -0.527 5.527 18 H 0.036 0.964 19 H 0.063 0.937 20 H 0.049 0.951 21 H 0.024 0.976 22 H 0.013 0.987 23 H 0.258 0.742 24 H 0.050 0.950 25 H 0.083 0.917 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.356 0.644 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.984 -0.375 -8.918 13.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.008 4.008 3 H 0.091 0.909 4 C -0.039 4.039 5 C -0.529 4.529 6 H 0.093 0.907 7 C -0.139 4.139 8 N -0.552 5.552 9 Si 0.705 3.295 10 H -0.206 1.206 11 H -0.219 1.219 12 H -0.193 1.193 13 N -0.157 5.157 14 C -0.113 4.113 15 C -0.193 4.193 16 C -0.103 4.103 17 N -0.248 5.248 18 H 0.055 0.945 19 H 0.083 0.917 20 H 0.068 0.932 21 H 0.042 0.958 22 H 0.032 0.968 23 H 0.068 0.932 24 H 0.068 0.932 25 H 0.101 0.899 26 H 0.091 0.909 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -9.850 -0.335 -8.334 12.907 hybrid contribution -0.536 -0.498 -0.018 0.732 sum -10.387 -0.832 -8.351 13.354 Atomic orbital electron populations 1.22372 0.99075 1.02031 0.99837 1.21774 0.90716 0.96985 0.91348 0.90942 1.19562 0.97252 0.95971 0.91165 1.21117 0.89782 1.33607 1.08396 0.90724 1.25011 0.94647 0.96353 0.97905 1.69928 1.06427 1.46565 1.32325 0.86832 0.80351 0.80641 0.81689 1.20571 1.21886 1.19295 1.67058 1.51199 0.96165 1.01323 1.23481 1.00226 0.96572 0.91044 1.23329 1.01051 0.96637 0.98297 1.23225 0.98964 0.98287 0.89774 1.64592 1.28604 1.00310 1.31331 0.94524 0.91749 0.93216 0.95787 0.96837 0.93188 0.93174 0.89893 0.90906 0.91105 0.91396 0.91058 0.82615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.06 8.80 37.16 0.33 -2.73 16 2 C 0.10 2.09 2.30 -67.71 -0.16 1.93 16 3 H 0.07 1.54 8.13 -51.93 -0.42 1.12 16 4 C 0.00 -0.05 3.55 -27.89 -0.10 -0.15 16 5 C -0.49 -14.25 9.39 -34.44 -0.32 -14.57 16 6 H 0.07 2.36 7.99 -52.49 -0.42 1.94 16 7 C 0.06 1.79 5.47 -17.82 -0.10 1.69 16 8 N -0.91 -28.90 13.96 55.43 0.77 -28.13 16 9 Si 0.88 22.52 27.47 -169.99 -4.67 17.85 16 10 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 11 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 12 H -0.27 -6.66 6.54 56.52 0.37 -6.29 16 13 N -0.34 -6.71 5.34 -104.72 -0.56 -7.27 16 14 C 0.02 0.25 6.61 -2.14 -0.01 0.23 16 15 C -0.15 -1.99 7.20 -24.57 -0.18 -2.17 16 16 C 0.03 0.39 7.70 -2.14 -0.02 0.37 16 17 N -0.53 -9.37 5.62 -8.74 -0.05 -9.41 16 18 H 0.04 0.57 6.29 -51.93 -0.33 0.24 16 19 H 0.06 1.16 7.45 -51.93 -0.39 0.77 16 20 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 21 H 0.02 0.60 7.01 -51.93 -0.36 0.24 16 22 H 0.01 0.34 7.20 -51.93 -0.37 -0.04 16 23 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 24 H 0.05 0.75 5.93 -51.92 -0.31 0.44 16 25 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 26 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.36 6.49 9.07 -174.34 -1.58 4.91 16 LS Contribution 240.37 15.07 3.62 3.62 Total: -1.00 -31.41 240.37 -7.32 -38.73 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -5.88 Total: -0.01 kcal Atomic # 6 Polarization: -14.83 SS G_CDS: -0.56 Total: -15.39 kcal Atomic # 7 Polarization: -44.98 SS G_CDS: 0.17 Total: -44.81 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -4.67 Total: 17.85 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -31.41 -7.32 -38.73 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695860513.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.358 kcal (2) G-P(sol) polarization free energy of solvation -31.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds