Wall clock time and date at job start Mon Mar 30 2020 02:34:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47193 * 2 1 4 4 C 1.53001 * 109.47197 * 120.00125 * 2 1 3 5 5 C 1.50694 * 109.47168 * 184.99933 * 4 2 1 6 6 H 1.08000 * 120.00563 * 359.97438 * 5 4 2 7 7 C 1.37885 * 119.99902 * 179.97438 * 5 4 2 8 8 N 1.31518 * 119.99792 * 179.72330 * 7 5 4 9 9 Si 1.86795 * 120.00009 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47088 * 89.99795 * 9 7 5 11 11 H 1.48495 * 109.47293 * 209.99997 * 9 7 5 12 12 H 1.48507 * 109.47015 * 329.99955 * 9 7 5 13 13 N 1.46900 * 109.47354 * 239.99978 * 2 1 3 14 14 C 1.47998 * 111.00147 * 65.64482 * 13 2 1 15 15 C 1.55051 * 103.72216 * 214.84104 * 14 13 2 16 16 C 1.55041 * 101.26514 * 35.62810 * 15 14 13 17 17 N 1.45771 * 111.00139 * 304.87877 * 13 2 1 18 18 H 1.09005 * 109.47168 * 59.99930 * 1 2 3 19 19 H 1.09000 * 109.47193 * 179.97438 * 1 2 3 20 20 H 1.08999 * 109.47050 * 300.00349 * 1 2 3 21 21 H 1.08998 * 109.46837 * 64.99954 * 4 2 1 22 22 H 1.09002 * 109.46926 * 304.99758 * 4 2 1 23 23 H 0.97000 * 119.99468 * 179.97438 * 8 7 5 24 24 H 1.09009 * 110.57469 * 333.40082 * 14 13 2 25 25 H 1.09000 * 110.57558 * 96.27842 * 14 13 2 26 26 H 1.09002 * 111.05936 * 277.62769 * 15 14 13 27 27 H 1.09000 * 111.06259 * 153.62893 * 15 14 13 28 28 H 1.09003 * 110.57618 * 205.81018 * 16 15 14 29 29 H 1.08999 * 110.57731 * 82.93206 * 16 15 14 30 30 H 1.00899 * 110.99937 * 244.46146 * 17 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.6150 1.3127 6 1 4.0790 -0.0862 0.5392 7 6 4.2303 -1.1927 2.3583 8 7 5.5415 -1.1046 2.4108 9 14 3.3014 -2.1079 3.6959 10 1 3.1708 -3.5380 3.3179 11 1 4.0446 -2.0003 4.9770 12 1 1.9502 -1.5128 3.8559 13 7 2.0197 -0.6925 -1.1994 14 6 1.6593 0.0526 -2.4263 15 6 1.3877 -1.0634 -3.4679 16 6 0.7392 -2.1558 -2.5792 17 7 1.4602 -2.0353 -1.2924 18 1 -0.3634 0.5139 -0.8900 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5139 0.8899 21 1 1.7516 -1.7715 1.2055 22 1 1.6054 -0.2617 2.1370 23 1 6.0257 -1.5108 3.1467 24 1 0.7624 0.6500 -2.2622 25 1 2.4876 0.6838 -2.7484 26 1 2.3174 -1.4200 -3.9114 27 1 0.6948 -0.7215 -4.2367 28 1 0.8927 -3.1438 -3.0132 29 1 -0.3239 -1.9574 -2.4427 30 1 2.1836 -2.7345 -1.2164 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695860513.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:15 Heat of formation + Delta-G solvation = 10.239311 kcal Electronic energy + Delta-G solvation = -11719.798483 eV Core-core repulsion = 9743.004805 eV Total energy + Delta-G solvation = -1976.793678 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.91150 -35.91373 -34.13249 -31.10580 -30.39581 -29.24023 -24.95399 -23.56354 -22.16678 -20.64428 -18.74333 -17.36493 -17.04919 -16.31408 -15.18121 -15.11099 -14.44623 -14.33597 -13.94480 -13.70129 -13.31842 -12.96789 -12.74354 -12.48984 -12.24042 -11.97630 -11.74572 -11.63907 -11.38009 -11.13681 -10.64924 -10.26399 -8.64138 -8.15416 -6.13777 1.40215 1.41132 1.53259 2.45165 2.71967 3.20512 3.67098 3.83652 4.07075 4.33579 4.37806 4.45676 4.52019 4.65098 4.82350 4.89052 4.97828 5.03789 5.18352 5.21061 5.31913 5.39269 5.69180 5.79548 6.18091 6.41219 6.54102 6.62835 6.93541 7.47128 9.02077 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.054137 B = 0.012054 C = 0.011588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.079814 B = 2322.230596 C = 2415.611320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.102 3.898 3 H 0.058 0.942 4 C 0.005 3.995 5 C -0.490 4.490 6 H 0.032 0.968 7 C -0.003 4.003 8 N -0.960 5.960 9 Si 0.948 3.052 10 H -0.271 1.271 11 H -0.290 1.290 12 H -0.251 1.251 13 N -0.377 5.377 14 C 0.012 3.988 15 C -0.142 4.142 16 C 0.029 3.971 17 N -0.539 5.539 18 H 0.058 0.942 19 H 0.061 0.939 20 H 0.055 0.945 21 H 0.023 0.977 22 H 0.013 0.987 23 H 0.260 0.740 24 H 0.061 0.939 25 H 0.077 0.923 26 H 0.070 0.930 27 H 0.101 0.899 28 H 0.089 0.911 29 H 0.081 0.919 30 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.278 -1.005 -9.390 15.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.007 4.007 3 H 0.076 0.924 4 C -0.033 4.033 5 C -0.528 4.528 6 H 0.050 0.950 7 C -0.197 4.197 8 N -0.603 5.603 9 Si 0.773 3.227 10 H -0.197 1.197 11 H -0.216 1.216 12 H -0.175 1.175 13 N -0.191 5.191 14 C -0.117 4.117 15 C -0.181 4.181 16 C -0.101 4.101 17 N -0.260 5.260 18 H 0.077 0.923 19 H 0.080 0.920 20 H 0.075 0.925 21 H 0.041 0.959 22 H 0.032 0.968 23 H 0.069 0.931 24 H 0.079 0.921 25 H 0.095 0.905 26 H 0.088 0.912 27 H 0.119 0.881 28 H 0.107 0.893 29 H 0.099 0.901 30 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -12.171 -0.951 -8.829 15.066 hybrid contribution 0.234 -0.263 0.031 0.353 sum -11.937 -1.214 -8.798 14.879 Atomic orbital electron populations 1.22207 0.96177 1.02279 1.01271 1.21551 0.92935 0.95706 0.90535 0.92390 1.19458 0.94084 0.96383 0.93366 1.21332 0.92149 1.32386 1.06983 0.95009 1.25932 0.95475 0.97567 1.00762 1.70091 1.08402 1.48222 1.33554 0.85690 0.79481 0.79389 0.78159 1.19650 1.21575 1.17486 1.66876 1.52650 0.97419 1.02187 1.23544 1.00453 0.97283 0.90385 1.23283 1.01656 0.95164 0.98038 1.23346 0.98852 0.99723 0.88165 1.64546 1.28134 0.99127 1.34181 0.92345 0.91972 0.92548 0.95867 0.96848 0.93087 0.92095 0.90467 0.91152 0.88053 0.89273 0.90056 0.83586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.24 8.80 71.98 0.63 -4.60 16 2 C 0.10 4.16 2.30 44.92 0.10 4.27 16 3 H 0.06 2.49 8.13 -2.39 -0.02 2.47 16 4 C 0.00 0.23 3.55 29.85 0.11 0.34 16 5 C -0.49 -29.09 9.39 25.60 0.24 -28.85 16 6 H 0.03 2.10 7.99 -2.91 -0.02 2.08 16 7 C 0.00 -0.17 5.47 84.66 0.46 0.29 16 8 N -0.96 -62.36 13.96 21.45 0.30 -62.06 16 9 Si 0.95 46.43 27.47 68.60 1.88 48.32 16 10 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 11 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 12 H -0.25 -11.51 6.54 99.48 0.65 -10.86 16 13 N -0.38 -14.51 5.34 -485.22 -2.59 -17.10 16 14 C 0.01 0.36 6.61 86.79 0.57 0.93 16 15 C -0.14 -3.27 7.20 31.99 0.23 -3.04 16 16 C 0.03 0.71 7.70 86.79 0.67 1.38 16 17 N -0.54 -18.38 5.62 -181.56 -1.02 -19.40 16 18 H 0.06 1.64 6.29 -2.38 -0.01 1.63 16 19 H 0.06 2.06 7.45 -2.39 -0.02 2.04 16 20 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 21 H 0.02 1.13 7.01 -2.39 -0.02 1.12 16 22 H 0.01 0.65 7.20 -2.39 -0.02 0.63 16 23 H 0.26 15.87 8.31 -92.71 -0.77 15.10 16 24 H 0.06 1.67 5.93 -2.38 -0.01 1.66 16 25 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 26 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.35 12.48 9.07 -204.58 -1.86 10.62 16 Total: -1.00 -68.17 240.37 0.79 -67.38 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -0.80 Total: 12.15 kcal Atomic # 6 Polarization: -32.31 SS G_CDS: 3.02 Total: -29.29 kcal Atomic # 7 Polarization: -95.25 SS G_CDS: -3.31 Total: -98.56 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 1.88 Total: 48.32 kcal Total: -68.17 0.79 -67.38 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695860513.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.623 kcal (2) G-P(sol) polarization free energy of solvation -68.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds