Wall clock time and date at job start Mon Mar 30 2020 02:30:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 110.88936 * 2 1 4 4 C 1.54915 * 111.03579 * 123.90422 * 2 1 3 5 5 N 1.47419 * 104.83183 * 155.09892 * 4 2 1 6 6 C 1.36937 * 125.64669 * 155.91072 * 5 4 2 7 7 H 1.08006 * 120.00009 * 179.97438 * 6 5 4 8 8 C 1.38813 * 119.99960 * 359.97243 * 6 5 4 9 9 N 1.31617 * 120.00222 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 119.99845 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47070 * 60.00092 * 10 8 6 12 12 H 1.48503 * 109.47359 * 180.02562 * 10 8 6 13 13 H 1.48506 * 109.47319 * 299.99973 * 10 8 6 14 14 C 1.47314 * 108.74001 * 335.71416 * 5 4 2 15 15 C 1.54330 * 107.11817 * 1.30246 * 14 5 4 16 16 H 1.09003 * 110.72184 * 263.52668 * 15 14 5 17 17 C 1.52998 * 110.72058 * 140.42467 * 15 14 5 18 18 N 1.46905 * 109.46978 * 68.84539 * 17 15 14 19 19 H 1.08992 * 109.47074 * 183.88239 * 1 2 3 20 20 H 1.09004 * 109.46878 * 303.88609 * 1 2 3 21 21 H 1.08999 * 109.46311 * 63.87989 * 1 2 3 22 22 H 1.09004 * 110.36287 * 273.93962 * 4 2 1 23 23 H 1.09002 * 110.36708 * 36.25449 * 4 2 1 24 24 H 0.96995 * 120.00013 * 179.97438 * 9 8 6 25 25 H 1.08995 * 110.06412 * 241.87779 * 14 5 4 26 26 H 1.09001 * 109.85421 * 120.61128 * 14 5 4 27 27 H 1.09002 * 109.47288 * 308.84439 * 17 15 14 28 28 H 1.08995 * 109.47151 * 188.84499 * 17 15 14 29 29 H 1.00901 * 110.99869 * 180.02562 * 18 17 15 30 30 H 1.00896 * 110.99543 * 303.95346 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9187 1.0184 0.0000 4 6 2.0861 -0.8065 1.2001 5 7 3.4280 -1.2422 0.7726 6 6 4.4653 -1.5655 1.6061 7 1 5.4138 -1.8752 1.1928 8 6 4.2977 -1.4951 2.9823 9 7 3.1416 -1.1181 3.4860 10 14 5.7125 -1.9368 4.1193 11 1 6.8624 -1.0362 3.8514 12 1 5.2798 -1.7813 5.5314 13 1 6.1197 -3.3445 3.8790 14 6 3.4677 -1.2771 -0.6996 15 6 2.0862 -0.8075 -1.2025 16 1 1.4455 -1.6613 -1.4230 17 6 2.2342 0.0882 -2.4339 18 7 2.7035 -0.7155 -3.5705 19 1 -0.3633 -1.0252 0.0696 20 1 -0.3633 0.5730 0.8532 21 1 -0.3632 0.4525 -0.9227 22 1 2.1567 -0.1719 2.0835 23 1 1.4531 -1.6706 1.4024 24 1 3.0244 -1.0693 4.4477 25 1 3.6621 -2.2925 -1.0445 26 1 4.2435 -0.6042 -1.0650 27 1 2.9561 0.8776 -2.2245 28 1 1.2696 0.5334 -2.6775 29 1 2.8097 -0.1461 -4.3967 30 1 3.5648 -1.1907 -3.3461 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708861674.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:59 Heat of formation + Delta-G solvation = 12.726065 kcal Electronic energy + Delta-G solvation = -11666.203899 eV Core-core repulsion = 9689.518055 eV Total energy + Delta-G solvation = -1976.685844 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.07479 -34.27330 -32.54110 -30.65712 -28.14001 -25.77742 -24.54694 -22.28208 -19.64152 -19.14400 -16.84161 -15.84630 -14.79409 -14.50127 -13.76411 -13.68515 -12.99699 -12.79434 -12.41619 -11.69689 -11.48580 -11.32144 -11.02823 -10.76841 -10.74662 -10.10289 -9.89261 -9.75407 -9.67207 -9.28776 -8.60629 -8.49806 -6.77495 -5.60380 -3.01925 3.42615 3.46413 3.48065 4.52523 4.79894 5.36299 5.37696 5.51228 5.59772 5.66860 5.88013 5.93407 6.24200 6.26260 6.33548 6.38734 6.60044 6.67782 6.75054 6.86596 7.09974 7.34480 7.60551 7.61663 7.68072 7.92285 8.41827 9.27270 9.88098 10.54592 11.43193 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.056914 B = 0.011858 C = 0.010086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.848966 B = 2360.718847 C = 2775.399744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.116 4.116 3 H 0.066 0.934 4 C 0.160 3.840 5 N -0.606 5.606 6 C -0.222 4.222 7 H 0.076 0.924 8 C -0.013 4.013 9 N -0.923 5.923 10 Si 0.914 3.086 11 H -0.286 1.286 12 H -0.290 1.290 13 H -0.286 1.286 14 C 0.140 3.860 15 C -0.095 4.095 16 H 0.077 0.923 17 C 0.074 3.926 18 N -0.853 5.853 19 H 0.051 0.949 20 H 0.051 0.949 21 H 0.043 0.957 22 H 0.104 0.896 23 H 0.011 0.989 24 H 0.252 0.748 25 H 0.020 0.980 26 H 0.016 0.984 27 H 0.025 0.975 28 H 0.066 0.934 29 H 0.333 0.667 30 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.496 2.781 -8.550 9.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.136 4.136 3 H 0.084 0.916 4 C 0.035 3.965 5 N -0.332 5.332 6 C -0.351 4.351 7 H 0.093 0.907 8 C -0.208 4.208 9 N -0.571 5.571 10 Si 0.745 3.255 11 H -0.212 1.212 12 H -0.216 1.216 13 H -0.212 1.212 14 C 0.014 3.986 15 C -0.114 4.114 16 H 0.095 0.905 17 C -0.057 4.057 18 N -0.382 5.382 19 H 0.070 0.930 20 H 0.071 0.929 21 H 0.062 0.938 22 H 0.122 0.878 23 H 0.029 0.971 24 H 0.063 0.937 25 H 0.038 0.962 26 H 0.034 0.966 27 H 0.043 0.957 28 H 0.085 0.915 29 H 0.144 0.856 30 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -3.126 2.358 -8.217 9.102 hybrid contribution 1.581 0.321 0.575 1.713 sum -1.544 2.679 -7.643 8.245 Atomic orbital electron populations 1.21625 0.95691 1.01351 1.00321 1.22624 0.94496 0.99279 0.97244 0.91593 1.21960 0.84035 0.95818 0.94682 1.44577 1.10520 1.78940 0.99121 1.19051 0.91041 1.37689 0.87288 0.90661 1.24791 0.97290 1.02137 0.96601 1.69800 1.22394 1.53920 1.11025 0.86153 0.81220 0.78176 0.79950 1.21229 1.21561 1.21249 1.21375 0.93843 0.97012 0.86370 1.22246 0.97909 0.98109 0.93163 0.90505 1.21796 0.99140 0.94283 0.90469 1.58789 1.38275 1.34645 1.06445 0.92978 0.92941 0.93806 0.87806 0.97054 0.93740 0.96204 0.96614 0.95677 0.91545 0.85562 0.84594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.18 9.31 37.16 0.35 -1.83 16 2 C -0.12 -2.29 3.09 -88.47 -0.27 -2.56 16 3 H 0.07 1.30 8.05 -51.93 -0.42 0.89 16 4 C 0.16 4.03 5.36 -2.53 -0.01 4.01 16 5 N -0.61 -16.20 3.40 -169.83 -0.58 -16.78 16 6 C -0.22 -6.40 10.28 -15.06 -0.15 -6.56 16 7 H 0.08 2.09 7.83 -52.48 -0.41 1.68 16 8 C -0.01 -0.37 5.49 -17.43 -0.10 -0.47 16 9 N -0.92 -27.51 10.09 55.49 0.56 -26.95 16 10 Si 0.91 22.50 29.55 -169.99 -5.02 17.48 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 13 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 14 C 0.14 3.07 6.15 -2.90 -0.02 3.05 16 15 C -0.09 -1.76 2.65 -88.78 -0.24 -2.00 16 16 H 0.08 1.46 8.04 -51.93 -0.42 1.05 16 17 C 0.07 1.13 6.17 -3.82 -0.02 1.10 16 18 N -0.85 -11.56 9.62 -10.37 -0.10 -11.66 16 19 H 0.05 0.86 8.07 -51.93 -0.42 0.44 16 20 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 21 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 22 H 0.10 2.92 5.88 -51.93 -0.31 2.62 16 23 H 0.01 0.31 7.99 -51.93 -0.41 -0.11 16 24 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.02 0.34 7.73 -51.93 -0.40 -0.06 16 27 H 0.02 0.39 8.00 -51.93 -0.42 -0.03 16 28 H 0.07 0.94 8.13 -51.93 -0.42 0.52 16 29 H 0.33 3.64 9.08 -39.29 -0.36 3.28 16 30 H 0.34 4.63 8.31 -39.29 -0.33 4.30 16 LS Contribution 242.30 15.07 3.65 3.65 Total: -1.00 -30.48 242.30 -6.67 -37.15 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -4.71 Total: 2.36 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: -0.47 Total: -5.25 kcal Atomic # 7 Polarization: -55.27 SS G_CDS: -0.12 Total: -55.38 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -30.48 -6.67 -37.15 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708861674.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.873 kcal (2) G-P(sol) polarization free energy of solvation -30.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds