Wall clock time and date at job start Mon Mar 30 2020 02:30:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 110.88936 * 2 1 4 4 C 1.54915 * 111.03579 * 123.90422 * 2 1 3 5 5 N 1.47419 * 104.83183 * 155.09892 * 4 2 1 6 6 C 1.36937 * 125.64669 * 155.91072 * 5 4 2 7 7 H 1.08006 * 120.00009 * 179.97438 * 6 5 4 8 8 C 1.38813 * 119.99960 * 359.97243 * 6 5 4 9 9 N 1.31617 * 120.00222 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 119.99845 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47070 * 60.00092 * 10 8 6 12 12 H 1.48503 * 109.47359 * 180.02562 * 10 8 6 13 13 H 1.48506 * 109.47319 * 299.99973 * 10 8 6 14 14 C 1.47314 * 108.74001 * 335.71416 * 5 4 2 15 15 C 1.54330 * 107.11817 * 1.30246 * 14 5 4 16 16 H 1.09003 * 110.72184 * 263.52668 * 15 14 5 17 17 C 1.52998 * 110.72058 * 140.42467 * 15 14 5 18 18 N 1.46905 * 109.46978 * 68.84539 * 17 15 14 19 19 H 1.08992 * 109.47074 * 183.88239 * 1 2 3 20 20 H 1.09004 * 109.46878 * 303.88609 * 1 2 3 21 21 H 1.08999 * 109.46311 * 63.87989 * 1 2 3 22 22 H 1.09004 * 110.36287 * 273.93962 * 4 2 1 23 23 H 1.09002 * 110.36708 * 36.25449 * 4 2 1 24 24 H 0.96995 * 120.00013 * 179.97438 * 9 8 6 25 25 H 1.08995 * 110.06412 * 241.87779 * 14 5 4 26 26 H 1.09001 * 109.85421 * 120.61128 * 14 5 4 27 27 H 1.09002 * 109.47288 * 308.84439 * 17 15 14 28 28 H 1.08995 * 109.47151 * 188.84499 * 17 15 14 29 29 H 1.00901 * 110.99869 * 180.02562 * 18 17 15 30 30 H 1.00896 * 110.99543 * 303.95346 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9187 1.0184 0.0000 4 6 2.0861 -0.8065 1.2001 5 7 3.4280 -1.2422 0.7726 6 6 4.4653 -1.5655 1.6061 7 1 5.4138 -1.8752 1.1928 8 6 4.2977 -1.4951 2.9823 9 7 3.1416 -1.1181 3.4860 10 14 5.7125 -1.9368 4.1193 11 1 6.8624 -1.0362 3.8514 12 1 5.2798 -1.7813 5.5314 13 1 6.1197 -3.3445 3.8790 14 6 3.4677 -1.2771 -0.6996 15 6 2.0862 -0.8075 -1.2025 16 1 1.4455 -1.6613 -1.4230 17 6 2.2342 0.0882 -2.4339 18 7 2.7035 -0.7155 -3.5705 19 1 -0.3633 -1.0252 0.0696 20 1 -0.3633 0.5730 0.8532 21 1 -0.3632 0.4525 -0.9227 22 1 2.1567 -0.1719 2.0835 23 1 1.4531 -1.6706 1.4024 24 1 3.0244 -1.0693 4.4477 25 1 3.6621 -2.2925 -1.0445 26 1 4.2435 -0.6042 -1.0650 27 1 2.9561 0.8776 -2.2245 28 1 1.2696 0.5334 -2.6775 29 1 2.8097 -0.1461 -4.3967 30 1 3.5648 -1.1907 -3.3461 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708861674.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:59 Heat of formation + Delta-G solvation = -9.088350 kcal Electronic energy + Delta-G solvation = -11667.149843 eV Core-core repulsion = 9689.518055 eV Total energy + Delta-G solvation = -1977.631788 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.75734 -35.87253 -34.21571 -32.55119 -29.75193 -27.69919 -26.15986 -23.95440 -21.44799 -20.70870 -18.90587 -17.36478 -16.50065 -16.04812 -15.48709 -15.27022 -14.61303 -14.36520 -13.89357 -13.40827 -13.34503 -12.99971 -12.76620 -12.62880 -12.38858 -11.97404 -11.79455 -11.51584 -11.30180 -11.04909 -10.74801 -9.58542 -8.89903 -7.77985 -5.23309 1.44398 1.48331 1.54828 2.48499 3.30032 3.61200 3.70262 3.91899 4.04178 4.16528 4.48825 4.52140 4.71275 4.77920 4.81907 4.94334 5.02479 5.13395 5.21487 5.36416 5.42583 5.51921 5.72848 5.82119 6.23885 6.30562 6.65296 7.09800 7.77393 8.42536 9.23418 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.056914 B = 0.011858 C = 0.010086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.848966 B = 2360.718847 C = 2775.399744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.104 4.104 3 H 0.067 0.933 4 C 0.162 3.838 5 N -0.630 5.630 6 C -0.245 4.245 7 H 0.079 0.921 8 C -0.069 4.069 9 N -0.949 5.949 10 Si 0.983 3.017 11 H -0.275 1.275 12 H -0.291 1.291 13 H -0.279 1.279 14 C 0.136 3.864 15 C -0.082 4.082 16 H 0.074 0.926 17 C 0.084 3.916 18 N -0.854 5.854 19 H 0.047 0.953 20 H 0.054 0.946 21 H 0.077 0.923 22 H 0.069 0.931 23 H -0.017 1.017 24 H 0.247 0.753 25 H 0.017 0.983 26 H 0.022 0.978 27 H 0.024 0.976 28 H 0.086 0.914 29 H 0.351 0.649 30 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.454 3.260 -9.950 10.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.124 4.124 3 H 0.086 0.914 4 C 0.037 3.963 5 N -0.356 5.356 6 C -0.374 4.374 7 H 0.097 0.903 8 C -0.262 4.262 9 N -0.599 5.599 10 Si 0.811 3.189 11 H -0.201 1.201 12 H -0.217 1.217 13 H -0.205 1.205 14 C 0.011 3.989 15 C -0.101 4.101 16 H 0.092 0.908 17 C -0.047 4.047 18 N -0.385 5.385 19 H 0.066 0.934 20 H 0.073 0.927 21 H 0.095 0.905 22 H 0.087 0.913 23 H 0.001 0.999 24 H 0.057 0.943 25 H 0.035 0.965 26 H 0.040 0.960 27 H 0.042 0.958 28 H 0.105 0.895 29 H 0.165 0.835 30 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -3.081 2.843 -9.665 10.535 hybrid contribution 1.580 0.145 0.981 1.865 sum -1.501 2.988 -8.684 9.306 Atomic orbital electron populations 1.21580 0.92928 1.01560 1.02231 1.22481 0.96691 0.98318 0.94958 0.91429 1.21765 0.83671 0.94752 0.96146 1.44933 1.10514 1.79022 1.01161 1.19456 0.91950 1.37737 0.88209 0.90316 1.25692 0.99944 1.02415 0.98112 1.70069 1.24224 1.54734 1.10833 0.85085 0.78266 0.78151 0.77414 1.20133 1.21725 1.20477 1.21550 0.96300 0.97083 0.83941 1.22147 0.95401 0.98375 0.94160 0.90782 1.21648 1.00349 0.93368 0.89347 1.58739 1.38367 1.34782 1.06584 0.93434 0.92672 0.90455 0.91260 0.99929 0.94292 0.96503 0.95968 0.95771 0.89537 0.83526 0.84648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.87 9.31 71.98 0.67 -3.20 16 2 C -0.10 -4.00 3.09 -9.40 -0.03 -4.03 16 3 H 0.07 2.58 8.05 -2.39 -0.02 2.56 16 4 C 0.16 8.35 5.36 86.86 0.47 8.81 16 5 N -0.63 -34.24 3.40 -691.22 -2.35 -36.59 16 6 C -0.24 -14.30 10.28 84.03 0.86 -13.44 16 7 H 0.08 4.40 7.83 -2.91 -0.02 4.37 16 8 C -0.07 -4.05 5.49 84.86 0.47 -3.59 16 9 N -0.95 -58.19 10.09 21.65 0.22 -57.97 16 10 Si 0.98 46.70 29.55 68.60 2.03 48.72 16 11 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 12 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 13 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 14 C 0.14 5.90 6.15 86.68 0.53 6.43 16 15 C -0.08 -2.88 2.65 -9.60 -0.03 -2.91 16 16 H 0.07 2.68 8.04 -2.39 -0.02 2.66 16 17 C 0.08 2.29 6.17 86.30 0.53 2.82 16 18 N -0.85 -20.52 9.62 -186.71 -1.80 -22.31 16 19 H 0.05 1.50 8.07 -2.39 -0.02 1.49 16 20 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 21 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 22 H 0.07 4.06 5.88 -2.38 -0.01 4.04 16 23 H -0.02 -0.96 7.99 -2.39 -0.02 -0.98 16 24 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 25 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.02 0.94 7.73 -2.39 -0.02 0.92 16 27 H 0.02 0.67 8.00 -2.39 -0.02 0.66 16 28 H 0.09 2.07 8.13 -2.39 -0.02 2.05 16 29 H 0.35 6.45 9.08 -89.69 -0.81 5.64 16 30 H 0.34 8.41 8.31 -89.70 -0.75 7.66 16 Total: -1.00 -66.19 242.30 1.13 -65.05 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -0.44 Total: 12.20 kcal Atomic # 6 Polarization: -12.57 SS G_CDS: 3.47 Total: -9.10 kcal Atomic # 7 Polarization: -112.95 SS G_CDS: -3.93 Total: -116.87 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 2.03 Total: 48.72 kcal Total: -66.19 1.13 -65.05 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708861674.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.963 kcal (2) G-P(sol) polarization free energy of solvation -66.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds