Wall clock time and date at job start Mon Mar 30 2020 01:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.48225 * 2 1 4 4 C 1.53096 * 109.48322 * 239.97146 * 2 1 3 5 5 C 1.53174 * 109.16813 * 182.40567 * 4 2 1 6 6 C 1.53185 * 109.03097 * 56.97833 * 5 4 2 7 7 H 1.08997 * 109.52089 * 62.93290 * 6 5 4 8 8 C 1.50707 * 109.56948 * 183.08264 * 6 5 4 9 9 H 1.07998 * 119.99621 * 119.71999 * 8 6 5 10 10 C 1.37870 * 119.99920 * 299.71718 * 8 6 5 11 11 N 1.31512 * 120.00485 * 0.02562 * 10 8 6 12 12 Si 1.86805 * 120.00053 * 180.02562 * 10 8 6 13 13 H 1.48496 * 109.47107 * 89.99739 * 12 10 8 14 14 H 1.48501 * 109.47641 * 210.00179 * 12 10 8 15 15 H 1.48503 * 109.47001 * 330.00122 * 12 10 8 16 16 C 1.53083 * 109.16441 * 303.02065 * 6 5 4 17 17 H 1.09003 * 109.48317 * 177.59728 * 16 6 5 18 18 C 1.53003 * 109.47998 * 297.62446 * 16 6 5 19 19 O 1.42897 * 109.41687 * 57.61249 * 16 6 5 20 20 H 1.09002 * 109.47153 * 299.97197 * 1 2 3 21 21 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.47261 * 59.97369 * 1 2 3 23 23 H 1.08999 * 109.52085 * 302.31627 * 4 2 1 24 24 H 1.08999 * 109.52264 * 62.49870 * 4 2 1 25 25 H 1.08999 * 109.54281 * 297.11296 * 5 4 2 26 26 H 1.08999 * 109.61761 * 176.88849 * 5 4 2 27 27 H 0.97003 * 120.00741 * 179.97438 * 11 10 8 28 28 H 1.09003 * 109.46947 * 179.97438 * 18 16 6 29 29 H 1.08997 * 109.47250 * 299.94441 * 18 16 6 30 30 H 1.09002 * 109.46883 * 59.94621 * 18 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0406 -0.7223 -1.2496 5 6 3.5711 -0.7708 -1.2123 6 6 4.0176 -1.4600 0.0809 7 1 3.6614 -2.4901 0.0863 8 6 5.5222 -1.4471 0.1662 9 1 6.0119 -0.9530 0.9923 10 6 6.2734 -2.0661 -0.8102 11 7 5.6771 -2.6674 -1.8163 12 14 8.1384 -2.0507 -0.7040 13 1 8.6007 -3.2397 0.0561 14 1 8.7125 -2.0844 -2.0731 15 1 8.5845 -0.8157 -0.0105 16 6 3.4307 -0.7093 1.2790 17 1 3.7100 -1.2202 2.2005 18 6 3.9761 0.7200 1.3024 19 8 2.0066 -0.6742 1.1664 20 1 -0.3633 0.5134 0.8902 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5143 -0.8898 23 1 1.6443 -1.7374 -1.2710 24 1 1.7149 -0.1844 -2.1399 25 1 3.9689 0.2436 -1.2409 26 1 3.9405 -1.3318 -2.0707 27 1 6.2056 -3.1027 -2.5035 28 1 3.5578 1.2546 2.1553 29 1 5.0624 0.6931 1.3884 30 1 3.6971 1.2306 0.3807 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710030167.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:37 Heat of formation + Delta-G solvation = -68.445028 kcal Electronic energy + Delta-G solvation = -11968.783529 eV Core-core repulsion = 9956.285091 eV Total energy + Delta-G solvation = -2012.498438 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.88153 -33.92614 -32.52150 -31.23954 -28.53871 -26.57439 -23.76823 -22.02495 -21.09113 -18.29986 -16.32987 -15.45142 -14.92627 -14.31140 -13.92462 -13.42015 -12.89245 -12.18332 -12.06201 -11.81900 -11.51717 -11.23511 -11.07178 -10.90558 -10.76876 -10.44323 -10.23201 -9.75400 -9.72201 -9.05838 -8.76791 -8.41638 -8.10952 -5.98763 -4.05298 3.29725 3.36625 3.39145 4.40969 4.63016 5.30661 5.48151 5.65215 5.85601 5.95467 6.10138 6.13240 6.18752 6.30777 6.36521 6.38911 6.69142 6.70976 6.82998 6.93944 7.01701 7.21708 7.47498 7.72608 7.93927 8.02771 8.20214 8.49345 8.97988 9.58809 11.07152 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.067101 B = 0.012806 C = 0.011518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 417.183790 B = 2185.952980 C = 2430.475137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.085 3.915 3 H 0.050 0.950 4 C -0.149 4.149 5 C -0.112 4.112 6 C 0.026 3.974 7 H 0.031 0.969 8 C -0.512 4.512 9 H 0.058 0.942 10 C 0.062 3.938 11 N -0.889 5.889 12 Si 0.890 3.110 13 H -0.281 1.281 14 H -0.287 1.287 15 H -0.274 1.274 16 C 0.090 3.910 17 H 0.085 0.915 18 C -0.169 4.169 19 O -0.391 6.391 20 H 0.053 0.947 21 H 0.058 0.942 22 H 0.061 0.939 23 H 0.059 0.941 24 H 0.049 0.951 25 H 0.037 0.963 26 H 0.091 0.909 27 H 0.260 0.740 28 H 0.035 0.965 29 H 0.072 0.928 30 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.443 4.844 1.812 7.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.028 3.972 3 H 0.068 0.932 4 C -0.187 4.187 5 C -0.150 4.150 6 C 0.007 3.993 7 H 0.049 0.951 8 C -0.550 4.550 9 H 0.076 0.924 10 C -0.139 4.139 11 N -0.528 5.528 12 Si 0.718 3.282 13 H -0.207 1.207 14 H -0.213 1.213 15 H -0.199 1.199 16 C 0.033 3.967 17 H 0.103 0.897 18 C -0.227 4.227 19 O -0.312 6.312 20 H 0.073 0.927 21 H 0.077 0.923 22 H 0.080 0.920 23 H 0.077 0.923 24 H 0.068 0.932 25 H 0.056 0.944 26 H 0.109 0.891 27 H 0.069 0.931 28 H 0.055 0.945 29 H 0.091 0.909 30 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.520 4.663 1.780 7.441 hybrid contribution 1.276 0.068 -0.283 1.309 sum -4.243 4.731 1.496 6.529 Atomic orbital electron populations 1.21764 0.94774 1.02201 1.01197 1.21943 0.93321 0.95269 0.86697 0.93235 1.22290 0.99940 1.00179 0.96249 1.21686 0.90291 0.99868 1.03141 1.19205 0.95198 0.95026 0.89821 0.95050 1.21124 0.90764 1.34681 1.08410 0.92368 1.24963 0.98352 0.95176 0.95450 1.69894 1.35050 1.35950 1.11892 0.86628 0.85941 0.78404 0.77219 1.20718 1.21305 1.19942 1.22349 0.78501 0.95369 1.00479 0.89695 1.22320 1.02525 0.97672 1.00152 1.87815 1.22943 1.77887 1.42509 0.92742 0.92282 0.91958 0.92269 0.93233 0.94396 0.89108 0.93054 0.94548 0.90888 0.92731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 9.56 37.16 0.36 -1.78 16 2 C 0.09 1.60 2.94 -26.68 -0.08 1.52 16 3 H 0.05 0.91 6.34 -51.93 -0.33 0.58 16 4 C -0.15 -3.00 5.42 -26.59 -0.14 -3.14 16 5 C -0.11 -2.67 4.74 -26.55 -0.13 -2.80 16 6 C 0.03 0.66 2.08 -91.63 -0.19 0.47 16 7 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 8 C -0.51 -13.84 7.83 -34.44 -0.27 -14.10 16 9 H 0.06 1.53 6.55 -52.49 -0.34 1.19 16 10 C 0.06 1.70 5.31 -17.82 -0.09 1.61 16 11 N -0.89 -25.42 11.38 55.43 0.63 -24.78 16 12 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 13 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 14 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 15 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 16 C 0.09 1.98 3.44 -26.69 -0.09 1.89 16 17 H 0.09 1.85 8.14 -51.93 -0.42 1.43 16 18 C -0.17 -3.37 8.37 37.16 0.31 -3.06 16 19 O -0.39 -8.34 10.24 -35.23 -0.36 -8.70 16 20 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 21 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 22 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 23 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 24 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.04 0.89 6.62 -51.93 -0.34 0.55 16 26 H 0.09 2.42 6.20 -51.93 -0.32 2.10 16 27 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 28 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.07 1.49 6.48 -51.93 -0.34 1.16 16 30 H 0.05 1.07 4.97 -51.93 -0.26 0.82 16 LS Contribution 232.76 15.07 3.51 3.51 Total: -1.00 -28.20 232.76 -6.02 -34.22 By element: Atomic # 1 Polarization: 3.46 SS G_CDS: -4.45 Total: -0.99 kcal Atomic # 6 Polarization: -19.06 SS G_CDS: -0.33 Total: -19.39 kcal Atomic # 7 Polarization: -25.42 SS G_CDS: 0.63 Total: -24.78 kcal Atomic # 8 Polarization: -8.34 SS G_CDS: -0.36 Total: -8.70 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -28.20 -6.02 -34.22 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710030167.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.227 kcal (2) G-P(sol) polarization free energy of solvation -28.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds