Wall clock time and date at job start Mon Mar 30 2020 01:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.48225 * 2 1 4 4 C 1.53096 * 109.48322 * 239.97146 * 2 1 3 5 5 C 1.53174 * 109.16813 * 182.40567 * 4 2 1 6 6 C 1.53185 * 109.03097 * 56.97833 * 5 4 2 7 7 H 1.08997 * 109.52089 * 62.93290 * 6 5 4 8 8 C 1.50707 * 109.56948 * 183.08264 * 6 5 4 9 9 H 1.07998 * 119.99621 * 119.71999 * 8 6 5 10 10 C 1.37870 * 119.99920 * 299.71718 * 8 6 5 11 11 N 1.31512 * 120.00485 * 0.02562 * 10 8 6 12 12 Si 1.86805 * 120.00053 * 180.02562 * 10 8 6 13 13 H 1.48496 * 109.47107 * 89.99739 * 12 10 8 14 14 H 1.48501 * 109.47641 * 210.00179 * 12 10 8 15 15 H 1.48503 * 109.47001 * 330.00122 * 12 10 8 16 16 C 1.53083 * 109.16441 * 303.02065 * 6 5 4 17 17 H 1.09003 * 109.48317 * 177.59728 * 16 6 5 18 18 C 1.53003 * 109.47998 * 297.62446 * 16 6 5 19 19 O 1.42897 * 109.41687 * 57.61249 * 16 6 5 20 20 H 1.09002 * 109.47153 * 299.97197 * 1 2 3 21 21 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.47261 * 59.97369 * 1 2 3 23 23 H 1.08999 * 109.52085 * 302.31627 * 4 2 1 24 24 H 1.08999 * 109.52264 * 62.49870 * 4 2 1 25 25 H 1.08999 * 109.54281 * 297.11296 * 5 4 2 26 26 H 1.08999 * 109.61761 * 176.88849 * 5 4 2 27 27 H 0.97003 * 120.00741 * 179.97438 * 11 10 8 28 28 H 1.09003 * 109.46947 * 179.97438 * 18 16 6 29 29 H 1.08997 * 109.47250 * 299.94441 * 18 16 6 30 30 H 1.09002 * 109.46883 * 59.94621 * 18 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0406 -0.7223 -1.2496 5 6 3.5711 -0.7708 -1.2123 6 6 4.0176 -1.4600 0.0809 7 1 3.6614 -2.4901 0.0863 8 6 5.5222 -1.4471 0.1662 9 1 6.0119 -0.9530 0.9923 10 6 6.2734 -2.0661 -0.8102 11 7 5.6771 -2.6674 -1.8163 12 14 8.1384 -2.0507 -0.7040 13 1 8.6007 -3.2397 0.0561 14 1 8.7125 -2.0844 -2.0731 15 1 8.5845 -0.8157 -0.0105 16 6 3.4307 -0.7093 1.2790 17 1 3.7100 -1.2202 2.2005 18 6 3.9761 0.7200 1.3024 19 8 2.0066 -0.6742 1.1664 20 1 -0.3633 0.5134 0.8902 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5143 -0.8898 23 1 1.6443 -1.7374 -1.2710 24 1 1.7149 -0.1844 -2.1399 25 1 3.9689 0.2436 -1.2409 26 1 3.9405 -1.3318 -2.0707 27 1 6.2056 -3.1027 -2.5035 28 1 3.5578 1.2546 2.1553 29 1 5.0624 0.6931 1.3884 30 1 3.6971 1.2306 0.3807 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710030167.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:37 Heat of formation + Delta-G solvation = -85.386508 kcal Electronic energy + Delta-G solvation = -11969.518166 eV Core-core repulsion = 9956.285091 eV Total energy + Delta-G solvation = -2013.233076 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.57920 -35.84171 -34.09592 -33.20169 -30.07317 -28.43605 -25.61405 -23.77463 -22.73107 -20.05820 -18.36367 -17.19225 -16.70971 -16.13312 -15.55885 -15.15184 -14.65280 -13.92566 -13.51163 -13.42973 -13.12048 -12.89224 -12.74230 -12.65857 -12.56004 -12.26541 -11.97409 -11.57768 -11.52384 -10.85065 -10.68671 -10.44842 -9.93141 -8.08334 -6.22408 1.41381 1.42146 1.52012 2.42449 3.06331 3.18666 4.03846 4.16285 4.31325 4.42276 4.44063 4.57221 4.68681 4.80513 4.87370 4.92990 5.06234 5.14045 5.21918 5.29556 5.36115 5.43179 5.56454 5.64205 5.93301 6.08644 6.26536 6.61639 6.89953 7.45130 8.96524 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.067101 B = 0.012806 C = 0.011518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 417.183790 B = 2185.952980 C = 2430.475137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.079 3.921 3 H 0.061 0.939 4 C -0.144 4.144 5 C -0.106 4.106 6 C 0.023 3.977 7 H -0.013 1.013 8 C -0.525 4.525 9 H 0.062 0.938 10 C 0.010 3.990 11 N -0.920 5.920 12 Si 0.955 3.045 13 H -0.278 1.278 14 H -0.286 1.286 15 H -0.264 1.264 16 C 0.093 3.907 17 H 0.082 0.918 18 C -0.159 4.159 19 O -0.401 6.401 20 H 0.068 0.932 21 H 0.054 0.946 22 H 0.089 0.911 23 H 0.045 0.955 24 H 0.076 0.924 25 H 0.038 0.962 26 H 0.057 0.943 27 H 0.259 0.741 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.793 6.312 2.268 8.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.022 3.978 3 H 0.079 0.921 4 C -0.181 4.181 5 C -0.144 4.144 6 C 0.004 3.996 7 H 0.005 0.995 8 C -0.563 4.563 9 H 0.080 0.920 10 C -0.188 4.188 11 N -0.559 5.559 12 Si 0.780 3.220 13 H -0.204 1.204 14 H -0.211 1.211 15 H -0.188 1.188 16 C 0.035 3.965 17 H 0.100 0.900 18 C -0.216 4.216 19 O -0.321 6.321 20 H 0.087 0.913 21 H 0.073 0.927 22 H 0.108 0.892 23 H 0.064 0.936 24 H 0.095 0.905 25 H 0.057 0.943 26 H 0.075 0.925 27 H 0.068 0.932 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.879 6.138 2.247 8.791 hybrid contribution 1.347 -0.414 -0.436 1.475 sum -4.532 5.725 1.810 7.522 Atomic orbital electron populations 1.21759 0.91572 1.02643 1.03304 1.22212 0.95799 0.95056 0.84730 0.92119 1.22236 0.96989 1.00237 0.98664 1.21499 0.93140 0.98866 1.00903 1.19173 0.94762 0.93301 0.92353 0.99500 1.21470 0.91919 1.34519 1.08410 0.91950 1.25768 1.02907 0.94945 0.95177 1.70049 1.36611 1.36709 1.12550 0.85606 0.80463 0.78697 0.77195 1.20409 1.21147 1.18842 1.22186 0.79230 0.96417 0.98621 0.90031 1.22200 1.01895 0.96151 1.01396 1.87809 1.22069 1.78501 1.43747 0.91305 0.92712 0.89218 0.93649 0.90537 0.94297 0.92475 0.93166 0.91844 0.91768 0.92614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.63 9.56 71.98 0.69 -2.94 16 2 C 0.08 2.78 2.94 30.63 0.09 2.87 16 3 H 0.06 2.02 6.34 -2.39 -0.02 2.01 16 4 C -0.14 -5.64 5.42 30.68 0.17 -5.47 16 5 C -0.11 -5.11 4.74 30.71 0.15 -4.96 16 6 C 0.02 1.18 2.08 -11.45 -0.02 1.15 16 7 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 8 C -0.53 -28.70 7.83 25.60 0.20 -28.50 16 9 H 0.06 3.28 6.55 -2.91 -0.02 3.26 16 10 C 0.01 0.58 5.31 84.65 0.45 1.02 16 11 N -0.92 -53.85 11.38 21.44 0.24 -53.61 16 12 Si 0.95 43.56 29.54 68.60 2.03 45.58 16 13 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 14 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 15 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 16 C 0.09 4.04 3.44 30.62 0.11 4.14 16 17 H 0.08 3.55 8.14 -2.39 -0.02 3.53 16 18 C -0.16 -6.03 8.37 71.98 0.60 -5.42 16 19 O -0.40 -16.55 10.24 -148.98 -1.52 -18.07 16 20 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 21 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 22 H 0.09 1.92 8.14 -2.38 -0.02 1.90 16 23 H 0.04 1.88 8.14 -2.39 -0.02 1.87 16 24 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 25 H 0.04 1.82 6.62 -2.39 -0.02 1.80 16 26 H 0.06 3.13 6.20 -2.39 -0.01 3.11 16 27 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 28 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.06 2.53 6.48 -2.39 -0.02 2.51 16 30 H 0.05 2.07 4.97 -2.39 -0.01 2.06 16 Total: -1.00 -60.59 232.76 4.27 -56.32 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: 1.10 Total: 7.89 kcal Atomic # 6 Polarization: -40.54 SS G_CDS: 2.42 Total: -38.11 kcal Atomic # 7 Polarization: -53.85 SS G_CDS: 0.24 Total: -53.61 kcal Atomic # 8 Polarization: -16.55 SS G_CDS: -1.52 Total: -18.07 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.58 kcal Total: -60.59 4.27 -56.32 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710030167.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.068 kcal (2) G-P(sol) polarization free energy of solvation -60.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds