Wall clock time and date at job start Mon Mar 30 2020 01:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47966 * 2 1 4 4 C 1.53092 * 109.49310 * 239.96400 * 2 1 3 5 5 C 1.53170 * 109.16424 * 297.62251 * 4 2 1 6 6 C 1.53179 * 109.03827 * 303.02003 * 5 4 2 7 7 H 1.09002 * 109.52131 * 297.07593 * 6 5 4 8 8 C 1.50706 * 109.57450 * 176.91635 * 6 5 4 9 9 H 1.07998 * 120.00003 * 240.15243 * 8 6 5 10 10 C 1.37879 * 119.99691 * 60.15990 * 8 6 5 11 11 N 1.31514 * 120.00149 * 359.97438 * 10 8 6 12 12 Si 1.86798 * 119.99598 * 179.97438 * 10 8 6 13 13 H 1.48494 * 109.47245 * 59.99861 * 12 10 8 14 14 H 1.48509 * 109.47085 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.47186 * 299.99381 * 12 10 8 16 16 C 1.53095 * 109.16513 * 56.98125 * 6 5 4 17 17 H 1.09001 * 109.48126 * 62.37050 * 16 6 5 18 18 C 1.52999 * 109.47980 * 182.41076 * 16 6 5 19 19 O 1.42900 * 109.41084 * 302.39357 * 16 6 5 20 20 H 1.08993 * 109.47744 * 299.98583 * 1 2 3 21 21 H 1.09001 * 109.46923 * 59.98359 * 1 2 3 22 22 H 1.09007 * 109.47249 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.51601 * 57.52951 * 4 2 1 24 24 H 1.08997 * 109.51974 * 177.71422 * 4 2 1 25 25 H 1.09005 * 109.54499 * 183.15191 * 5 4 2 26 26 H 1.09009 * 109.54383 * 62.88558 * 5 4 2 27 27 H 0.97003 * 119.99561 * 180.02562 * 11 10 8 28 28 H 1.08994 * 109.47142 * 60.00276 * 18 16 6 29 29 H 1.08998 * 109.46732 * 179.97438 * 18 16 6 30 30 H 1.08996 * 109.46940 * 299.99486 * 18 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0408 -0.7224 -1.2494 5 6 1.5763 -2.1814 -1.2118 6 6 2.0769 -2.8321 0.0814 7 1 3.1668 -2.8397 0.0871 8 6 1.5629 -4.2462 0.1669 9 1 0.9353 -4.5436 0.9940 10 6 1.8940 -5.1603 -0.8108 11 7 2.6580 -4.7981 -1.8182 12 14 1.2575 -6.9133 -0.7044 13 1 -0.2273 -6.9021 -0.7118 14 1 1.7520 -7.6910 -1.8689 15 1 1.7416 -7.5403 0.5516 16 6 1.5646 -2.0283 1.2794 17 1 0.4750 -2.0550 1.2959 18 6 2.1099 -2.6369 2.5729 19 8 2.0064 -0.6740 1.1666 20 1 -0.3634 0.5136 0.8900 21 1 -0.3633 0.5141 -0.8898 22 1 -0.3634 -1.0277 -0.0005 23 1 1.6424 -0.2360 -2.1397 24 1 3.1300 -0.6873 -1.2706 25 1 1.9833 -2.7159 -2.0702 26 1 0.4872 -2.2182 -1.2407 27 1 2.8906 -5.4412 -2.5061 28 1 3.1994 -2.6095 2.5562 29 1 1.7454 -2.0643 3.4257 30 1 1.7736 -3.6702 2.6582 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710030218.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:39 Heat of formation + Delta-G solvation = -85.756906 kcal Electronic energy + Delta-G solvation = -12017.299149 eV Core-core repulsion = 10004.050011 eV Total energy + Delta-G solvation = -2013.249137 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.55972 -35.77353 -34.28622 -33.07195 -30.04012 -28.24279 -26.07781 -23.54717 -22.65465 -19.93406 -18.57222 -17.14150 -16.61689 -16.36102 -15.49944 -14.98498 -14.57983 -13.97573 -13.65695 -13.41051 -12.96872 -12.84809 -12.80251 -12.64882 -12.62125 -12.21967 -11.89989 -11.66943 -11.52558 -10.91345 -10.64945 -10.43686 -9.91152 -8.07492 -6.21755 1.42394 1.43412 1.50774 2.43089 3.07647 3.19466 4.08413 4.16860 4.25442 4.34933 4.52246 4.63306 4.68446 4.74001 4.86667 4.90377 5.04553 5.16816 5.24119 5.31565 5.40856 5.43454 5.55246 5.64621 5.94294 6.09404 6.26765 6.62276 6.90554 7.45694 8.96957 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.051339 B = 0.014206 C = 0.012577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.259175 B = 1970.497108 C = 2225.697355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.084 3.916 3 H 0.114 0.886 4 C -0.145 4.145 5 C -0.107 4.107 6 C 0.025 3.975 7 H -0.011 1.011 8 C -0.527 4.527 9 H 0.060 0.940 10 C 0.012 3.988 11 N -0.919 5.919 12 Si 0.954 3.046 13 H -0.270 1.270 14 H -0.287 1.287 15 H -0.270 1.270 16 C 0.093 3.907 17 H 0.049 0.951 18 C -0.127 4.127 19 O -0.401 6.401 20 H 0.068 0.932 21 H 0.080 0.920 22 H 0.047 0.953 23 H 0.077 0.923 24 H 0.045 0.955 25 H 0.057 0.943 26 H 0.037 0.963 27 H 0.259 0.741 28 H 0.044 0.956 29 H 0.066 0.934 30 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.890 6.472 3.014 8.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.027 3.973 3 H 0.132 0.868 4 C -0.183 4.183 5 C -0.145 4.145 6 C 0.006 3.994 7 H 0.007 0.993 8 C -0.565 4.565 9 H 0.078 0.922 10 C -0.187 4.187 11 N -0.559 5.559 12 Si 0.779 3.221 13 H -0.195 1.195 14 H -0.213 1.213 15 H -0.195 1.195 16 C 0.036 3.964 17 H 0.067 0.933 18 C -0.184 4.184 19 O -0.322 6.322 20 H 0.087 0.913 21 H 0.099 0.901 22 H 0.066 0.934 23 H 0.096 0.904 24 H 0.064 0.936 25 H 0.075 0.925 26 H 0.056 0.944 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.085 0.915 30 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.692 6.484 2.996 8.040 hybrid contribution -0.134 -1.269 -0.554 1.391 sum -3.826 5.215 2.442 6.914 Atomic orbital electron populations 1.22366 0.95657 1.02250 1.03157 1.22274 0.94321 0.96046 0.84637 0.86810 1.22209 1.00148 0.97157 0.98749 1.21517 0.98315 0.93643 1.01067 1.19187 0.94311 0.93825 0.92059 0.99275 1.21429 1.31100 0.95701 1.08231 0.92195 1.25754 0.95284 1.02531 0.95109 1.70044 1.37631 1.35794 1.12402 0.85677 0.78873 0.79984 0.77534 1.19472 1.21293 1.19535 1.22133 0.97035 0.80788 0.96472 0.93270 1.21616 1.00686 1.00641 0.95422 1.87804 1.74842 1.25714 1.43806 0.91263 0.90069 0.93380 0.90422 0.93605 0.92491 0.94441 0.93164 0.93704 0.91526 0.91152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.35 8.65 71.98 0.62 -4.72 16 2 C 0.08 2.92 3.91 30.62 0.12 3.04 16 3 H 0.11 3.26 8.14 -2.39 -0.02 3.24 16 4 C -0.14 -5.65 5.64 30.68 0.17 -5.48 16 5 C -0.11 -5.18 4.74 30.71 0.15 -5.03 16 6 C 0.02 1.28 1.80 -11.45 -0.02 1.26 16 7 H -0.01 -0.65 8.14 -2.39 -0.02 -0.66 16 8 C -0.53 -28.80 7.85 25.60 0.20 -28.60 16 9 H 0.06 3.16 6.88 -2.91 -0.02 3.14 16 10 C 0.01 0.65 5.31 84.66 0.45 1.09 16 11 N -0.92 -53.77 11.37 21.45 0.24 -53.53 16 12 Si 0.95 43.48 29.54 68.60 2.03 45.50 16 13 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 14 H -0.29 -12.97 7.11 99.48 0.71 -12.27 16 15 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 16 C 0.09 4.03 2.39 30.63 0.07 4.11 16 17 H 0.05 2.11 6.34 -2.39 -0.02 2.09 16 18 C -0.13 -4.98 9.34 71.98 0.67 -4.31 16 19 O -0.40 -16.46 10.24 -148.98 -1.52 -17.98 16 20 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 21 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 22 H 0.05 1.67 4.98 -2.38 -0.01 1.66 16 23 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 24 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 25 H 0.06 3.12 6.19 -2.38 -0.01 3.11 16 26 H 0.04 1.76 6.62 -2.38 -0.02 1.75 16 27 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 28 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 30 H 0.07 2.80 6.78 -2.39 -0.02 2.78 16 Total: -1.00 -60.50 233.34 4.28 -56.22 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: 1.10 Total: 8.44 kcal Atomic # 6 Polarization: -41.08 SS G_CDS: 2.44 Total: -38.64 kcal Atomic # 7 Polarization: -53.77 SS G_CDS: 0.24 Total: -53.53 kcal Atomic # 8 Polarization: -16.46 SS G_CDS: -1.52 Total: -17.98 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.50 kcal Total: -60.50 4.28 -56.22 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710030218.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.542 kcal (2) G-P(sol) polarization free energy of solvation -60.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds