Wall clock time and date at job start Mon Mar 30 2020 02:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42906 * 113.99801 * 2 1 4 4 H 1.08995 * 109.47174 * 330.00678 * 3 2 1 5 5 C 1.53004 * 109.46530 * 90.00258 * 3 2 1 6 6 C 1.53011 * 109.46792 * 179.97438 * 5 3 2 7 7 C 1.52994 * 109.47189 * 300.00270 * 6 5 3 8 8 C 1.53005 * 109.47461 * 59.99752 * 7 6 5 9 9 C 1.52995 * 109.46904 * 300.00107 * 8 7 6 10 10 H 1.09002 * 109.47584 * 299.99441 * 9 8 7 11 11 C 1.50708 * 109.47303 * 179.97438 * 9 8 7 12 12 H 1.07998 * 120.00403 * 245.35490 * 11 9 8 13 13 C 1.37879 * 119.99846 * 65.34501 * 11 9 8 14 14 N 1.31506 * 120.00216 * 187.13433 * 13 11 9 15 15 Si 1.86803 * 119.99768 * 7.13954 * 13 11 9 16 16 H 1.48493 * 109.47280 * 269.99570 * 15 13 11 17 17 H 1.48504 * 109.47262 * 29.99600 * 15 13 11 18 18 H 1.48502 * 109.46707 * 149.99427 * 15 13 11 19 19 H 1.09006 * 109.46604 * 179.97438 * 1 2 3 20 20 H 1.09004 * 109.46726 * 299.98944 * 1 2 3 21 21 H 1.08997 * 109.47262 * 59.99830 * 1 2 3 22 22 H 1.08999 * 109.47530 * 60.00323 * 5 3 2 23 23 H 1.08997 * 109.47183 * 299.99925 * 5 3 2 24 24 H 1.08999 * 109.46931 * 180.02562 * 6 5 3 25 25 H 1.08999 * 109.46768 * 59.99919 * 6 5 3 26 26 H 1.09002 * 109.47090 * 300.00272 * 7 6 5 27 27 H 1.08995 * 109.47500 * 180.02562 * 7 6 5 28 28 H 1.08997 * 109.47170 * 180.02562 * 8 7 6 29 29 H 1.08995 * 109.46732 * 59.99892 * 8 7 6 30 30 H 0.97009 * 120.00036 * 354.91179 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 -0.5137 5 6 2.2176 1.7713 1.4426 6 6 2.8405 3.1689 1.4427 7 6 4.1892 3.1262 0.7215 8 6 3.9817 2.6603 -0.7210 9 6 3.3590 1.2629 -0.7210 10 1 4.0239 0.5686 -0.2072 11 6 3.1540 0.8042 -2.1419 12 1 2.1545 0.6500 -2.5208 13 6 4.2427 0.5816 -2.9582 14 7 4.0648 0.3183 -4.2344 15 14 5.9703 0.6538 -2.2515 16 1 6.4899 2.0410 -2.3550 17 1 5.9392 0.2421 -0.8250 18 1 6.8552 -0.2644 -3.0125 19 1 -0.3633 -1.0278 -0.0005 20 1 -0.3633 0.5137 0.8901 21 1 -0.3633 0.5138 -0.8899 22 1 2.8829 1.0774 1.9564 23 1 1.2568 1.8013 1.9564 24 1 2.9887 3.5005 2.4703 25 1 2.1755 3.8630 0.9287 26 1 4.8541 2.4320 1.2354 27 1 4.6331 4.1216 0.7220 28 1 4.9426 2.6295 -1.2346 29 1 3.3168 3.3544 -1.2349 30 1 3.1676 0.2077 -4.5863 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710030413.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:18 Heat of formation + Delta-G solvation = -71.219660 kcal Electronic energy + Delta-G solvation = -11920.936084 eV Core-core repulsion = 9908.317329 eV Total energy + Delta-G solvation = -2012.618755 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.51105 -35.69324 -32.82389 -30.06961 -29.29055 -25.93444 -24.13633 -21.69425 -20.60049 -19.01470 -17.39300 -15.92684 -14.85648 -14.55737 -13.81903 -13.58259 -13.31780 -13.01069 -12.57892 -11.99499 -11.45579 -11.35372 -11.09422 -10.77269 -10.48470 -10.28045 -10.06521 -9.91435 -9.59243 -9.32408 -8.66828 -8.52659 -8.24736 -6.29875 -3.93088 3.42345 3.51966 3.66344 4.53501 4.57942 5.31478 5.37293 5.43104 5.53965 5.71768 5.79963 5.96990 6.02773 6.07642 6.13286 6.16983 6.25831 6.35889 6.46197 6.62593 6.68511 6.88007 7.02926 7.17352 7.49656 8.08410 8.25812 8.50519 9.02509 9.74839 11.09398 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.035886 B = 0.018537 C = 0.013522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.055978 B = 1510.105631 C = 2070.223524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.371 6.371 3 C 0.108 3.892 4 H 0.047 0.953 5 C -0.143 4.143 6 C -0.110 4.110 7 C -0.126 4.126 8 C -0.117 4.117 9 C 0.017 3.983 10 H 0.034 0.966 11 C -0.573 4.573 12 H 0.054 0.946 13 C 0.023 3.977 14 N -0.921 5.921 15 Si 1.055 2.945 16 H -0.285 1.285 17 H -0.278 1.278 18 H -0.292 1.292 19 H 0.074 0.926 20 H 0.027 0.973 21 H 0.034 0.966 22 H 0.064 0.936 23 H 0.049 0.951 24 H 0.053 0.947 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.051 0.949 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.827 4.190 10.434 11.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.289 6.289 3 C 0.051 3.949 4 H 0.065 0.935 5 C -0.181 4.181 6 C -0.147 4.147 7 C -0.164 4.164 8 C -0.155 4.155 9 C -0.003 4.003 10 H 0.052 0.948 11 C -0.612 4.612 12 H 0.073 0.927 13 C -0.180 4.180 14 N -0.556 5.556 15 Si 0.885 3.115 16 H -0.212 1.212 17 H -0.204 1.204 18 H -0.218 1.218 19 H 0.093 0.907 20 H 0.046 0.954 21 H 0.053 0.947 22 H 0.083 0.917 23 H 0.068 0.932 24 H 0.072 0.928 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.113 3.925 10.022 10.821 hybrid contribution -1.967 0.333 0.386 2.031 sum -3.080 4.257 10.408 11.659 Atomic orbital electron populations 1.22629 0.83418 1.01449 0.98772 1.87982 1.17483 1.28702 1.94711 1.22128 0.96782 0.83189 0.92822 0.93501 1.22113 0.99991 0.97046 0.98900 1.21420 0.97309 0.96593 0.99423 1.21679 0.96522 1.00192 0.97973 1.21923 1.00762 0.99209 0.93590 1.19232 0.91254 0.92713 0.97057 0.94831 1.21972 0.95013 1.48343 0.95823 0.92740 1.25748 1.04067 0.93765 0.94426 1.70812 1.25217 1.46954 1.12647 0.83853 0.75552 0.76506 0.75608 1.21204 1.20421 1.21840 0.90721 0.95432 0.94718 0.91687 0.93243 0.92782 0.92428 0.92489 0.92994 0.92617 0.92547 0.92531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 10.82 101.05 1.09 1.69 16 2 O -0.37 -8.25 9.97 -35.23 -0.35 -8.61 16 3 C 0.11 2.32 1.99 -26.73 -0.05 2.27 16 4 H 0.05 1.01 7.79 -51.93 -0.40 0.60 16 5 C -0.14 -2.50 5.54 -26.72 -0.15 -2.64 16 6 C -0.11 -1.73 5.92 -26.73 -0.16 -1.88 16 7 C -0.13 -2.19 5.92 -26.73 -0.16 -2.35 16 8 C -0.12 -2.53 4.83 -26.73 -0.13 -2.66 16 9 C 0.02 0.41 1.42 -91.77 -0.13 0.27 16 10 H 0.03 0.86 6.60 -51.93 -0.34 0.52 16 11 C -0.57 -16.65 8.55 -34.44 -0.29 -16.94 16 12 H 0.05 1.72 7.98 -52.49 -0.42 1.30 16 13 C 0.02 0.68 5.42 -17.82 -0.10 0.58 16 14 N -0.92 -29.23 13.69 55.43 0.76 -28.47 16 15 Si 1.05 26.40 25.41 -169.99 -4.32 22.08 16 16 H -0.28 -6.69 6.76 56.52 0.38 -6.31 16 17 H -0.28 -6.55 6.36 56.52 0.36 -6.19 16 18 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 19 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 20 H 0.03 0.41 7.87 -51.93 -0.41 0.00 16 21 H 0.03 0.60 8.08 -51.93 -0.42 0.18 16 22 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 23 H 0.05 0.77 7.87 -51.93 -0.41 0.36 16 24 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 27 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.06 1.26 4.48 -51.93 -0.23 1.03 16 29 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.26 8.39 8.72 -40.82 -0.36 8.03 16 LS Contribution 236.10 15.07 3.56 3.56 Total: -1.00 -31.37 236.10 -5.24 -36.60 By element: Atomic # 1 Polarization: 1.31 SS G_CDS: -4.81 Total: -3.50 kcal Atomic # 6 Polarization: -21.59 SS G_CDS: -0.08 Total: -21.66 kcal Atomic # 7 Polarization: -29.23 SS G_CDS: 0.76 Total: -28.47 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: -0.35 Total: -8.61 kcal Atomic # 14 Polarization: 26.40 SS G_CDS: -4.32 Total: 22.08 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -31.37 -5.24 -36.60 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710030413.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.616 kcal (2) G-P(sol) polarization free energy of solvation -31.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds