Wall clock time and date at job start Mon Mar 30 2020 02:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42906 * 113.99801 * 2 1 4 4 H 1.08995 * 109.47174 * 330.00678 * 3 2 1 5 5 C 1.53004 * 109.46530 * 90.00258 * 3 2 1 6 6 C 1.53011 * 109.46792 * 179.97438 * 5 3 2 7 7 C 1.52994 * 109.47189 * 300.00270 * 6 5 3 8 8 C 1.53005 * 109.47461 * 59.99752 * 7 6 5 9 9 C 1.52995 * 109.46904 * 300.00107 * 8 7 6 10 10 H 1.09002 * 109.47584 * 299.99441 * 9 8 7 11 11 C 1.50708 * 109.47303 * 179.97438 * 9 8 7 12 12 H 1.07998 * 120.00403 * 245.35490 * 11 9 8 13 13 C 1.37879 * 119.99846 * 65.34501 * 11 9 8 14 14 N 1.31506 * 120.00216 * 187.13433 * 13 11 9 15 15 Si 1.86803 * 119.99768 * 7.13954 * 13 11 9 16 16 H 1.48493 * 109.47280 * 269.99570 * 15 13 11 17 17 H 1.48504 * 109.47262 * 29.99600 * 15 13 11 18 18 H 1.48502 * 109.46707 * 149.99427 * 15 13 11 19 19 H 1.09006 * 109.46604 * 179.97438 * 1 2 3 20 20 H 1.09004 * 109.46726 * 299.98944 * 1 2 3 21 21 H 1.08997 * 109.47262 * 59.99830 * 1 2 3 22 22 H 1.08999 * 109.47530 * 60.00323 * 5 3 2 23 23 H 1.08997 * 109.47183 * 299.99925 * 5 3 2 24 24 H 1.08999 * 109.46931 * 180.02562 * 6 5 3 25 25 H 1.08999 * 109.46768 * 59.99919 * 6 5 3 26 26 H 1.09002 * 109.47090 * 300.00272 * 7 6 5 27 27 H 1.08995 * 109.47500 * 180.02562 * 7 6 5 28 28 H 1.08997 * 109.47170 * 180.02562 * 8 7 6 29 29 H 1.08995 * 109.46732 * 59.99892 * 8 7 6 30 30 H 0.97009 * 120.00036 * 354.91179 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 -0.5137 5 6 2.2176 1.7713 1.4426 6 6 2.8405 3.1689 1.4427 7 6 4.1892 3.1262 0.7215 8 6 3.9817 2.6603 -0.7210 9 6 3.3590 1.2629 -0.7210 10 1 4.0239 0.5686 -0.2072 11 6 3.1540 0.8042 -2.1419 12 1 2.1545 0.6500 -2.5208 13 6 4.2427 0.5816 -2.9582 14 7 4.0648 0.3183 -4.2344 15 14 5.9703 0.6538 -2.2515 16 1 6.4899 2.0410 -2.3550 17 1 5.9392 0.2421 -0.8250 18 1 6.8552 -0.2644 -3.0125 19 1 -0.3633 -1.0278 -0.0005 20 1 -0.3633 0.5137 0.8901 21 1 -0.3633 0.5138 -0.8899 22 1 2.8829 1.0774 1.9564 23 1 1.2568 1.8013 1.9564 24 1 2.9887 3.5005 2.4703 25 1 2.1755 3.8630 0.9287 26 1 4.8541 2.4320 1.2354 27 1 4.6331 4.1216 0.7220 28 1 4.9426 2.6295 -1.2346 29 1 3.3168 3.3544 -1.2349 30 1 3.1676 0.2077 -4.5863 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710030413.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:18 Heat of formation + Delta-G solvation = -92.784060 kcal Electronic energy + Delta-G solvation = -11921.871187 eV Core-core repulsion = 9908.317329 eV Total energy + Delta-G solvation = -2013.553858 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.12066 -37.27171 -34.94658 -31.88813 -30.80805 -27.43497 -26.07071 -23.28398 -22.27292 -20.64249 -19.62200 -17.52591 -16.49952 -16.15769 -15.48518 -15.29427 -14.86945 -14.52516 -14.30766 -13.79577 -13.17103 -12.98216 -12.66200 -12.44921 -12.18497 -11.84649 -11.63236 -11.54392 -11.33137 -11.06659 -10.64735 -10.61472 -10.16195 -8.67671 -6.32301 1.40938 1.53511 1.70355 2.49081 2.98579 3.17645 3.90122 4.02570 4.20673 4.30822 4.40276 4.51299 4.54627 4.63876 4.69749 4.74267 4.80747 4.92469 5.06655 5.22283 5.24323 5.32985 5.44366 5.49150 5.66870 6.04617 6.11580 6.53562 6.60238 7.45013 8.69419 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.035886 B = 0.018537 C = 0.013522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.055978 B = 1510.105631 C = 2070.223524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.408 6.408 3 C 0.105 3.895 4 H 0.036 0.964 5 C -0.134 4.134 6 C -0.107 4.107 7 C -0.122 4.122 8 C -0.116 4.116 9 C 0.011 3.989 10 H 0.023 0.977 11 C -0.574 4.574 12 H 0.010 0.990 13 C -0.033 4.033 14 N -0.953 5.953 15 Si 1.093 2.907 16 H -0.257 1.257 17 H -0.254 1.254 18 H -0.294 1.294 19 H 0.092 0.908 20 H 0.058 0.942 21 H 0.024 0.976 22 H 0.063 0.937 23 H 0.073 0.927 24 H 0.091 0.909 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.080 0.920 28 H 0.045 0.955 29 H 0.048 0.952 30 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.157 5.508 13.289 14.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.327 6.327 3 C 0.048 3.952 4 H 0.054 0.946 5 C -0.172 4.172 6 C -0.144 4.144 7 C -0.159 4.159 8 C -0.154 4.154 9 C -0.008 4.008 10 H 0.042 0.958 11 C -0.613 4.613 12 H 0.028 0.972 13 C -0.228 4.228 14 N -0.591 5.591 15 Si 0.915 3.085 16 H -0.182 1.182 17 H -0.179 1.179 18 H -0.221 1.221 19 H 0.110 0.890 20 H 0.077 0.923 21 H 0.042 0.958 22 H 0.082 0.918 23 H 0.091 0.909 24 H 0.109 0.891 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.099 0.901 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -0.478 5.260 12.894 13.934 hybrid contribution -2.324 -0.131 -0.551 2.392 sum -2.801 5.128 12.343 13.656 Atomic orbital electron populations 1.22834 0.81030 1.03041 0.99743 1.87907 1.20248 1.29477 1.95076 1.22118 0.94749 0.82921 0.95424 0.94586 1.22037 1.01544 0.98067 0.95552 1.21453 0.96123 0.95390 1.01451 1.21659 0.98011 1.01721 0.94540 1.21803 0.99567 0.97002 0.97051 1.19252 0.93428 0.94132 0.93976 0.95844 1.22227 0.92890 1.47473 0.98673 0.97174 1.27260 1.08489 0.93025 0.94011 1.70948 1.24019 1.49929 1.14219 0.83414 0.70905 0.78078 0.76096 1.18230 1.17884 1.22134 0.88970 0.92305 0.95755 0.91794 0.90855 0.89087 0.91928 0.91907 0.90124 0.93699 0.93352 0.94389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.00 10.82 113.37 1.23 2.23 16 2 O -0.41 -18.08 9.97 -148.98 -1.49 -19.57 16 3 C 0.11 4.42 1.99 30.60 0.06 4.48 16 4 H 0.04 1.55 7.79 -2.39 -0.02 1.53 16 5 C -0.13 -4.23 5.54 30.60 0.17 -4.06 16 6 C -0.11 -2.85 5.92 30.60 0.18 -2.67 16 7 C -0.12 -3.72 5.92 30.59 0.18 -3.54 16 8 C -0.12 -4.82 4.83 30.59 0.15 -4.68 16 9 C 0.01 0.54 1.42 -11.54 -0.02 0.53 16 10 H 0.02 1.18 6.60 -2.39 -0.02 1.17 16 11 C -0.57 -34.46 8.55 25.60 0.22 -34.24 16 12 H 0.01 0.66 7.98 -2.91 -0.02 0.64 16 13 C -0.03 -1.99 5.42 84.66 0.46 -1.53 16 14 N -0.95 -62.82 13.69 21.45 0.29 -62.53 16 15 Si 1.09 52.80 25.41 68.60 1.74 54.54 16 16 H -0.26 -11.22 6.76 99.48 0.67 -10.55 16 17 H -0.25 -11.20 6.36 99.48 0.63 -10.57 16 18 H -0.29 -14.27 7.11 99.48 0.71 -13.57 16 19 H 0.09 2.70 8.14 -2.38 -0.02 2.68 16 20 H 0.06 1.59 7.87 -2.39 -0.02 1.57 16 21 H 0.02 0.84 8.08 -2.39 -0.02 0.82 16 22 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 23 H 0.07 1.97 7.87 -2.39 -0.02 1.95 16 24 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 25 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 26 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 27 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.04 1.93 4.48 -2.39 -0.01 1.92 16 29 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.25 16.59 8.72 -92.70 -0.81 15.79 16 Total: -1.00 -70.43 236.10 4.12 -66.31 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: 0.94 Total: 4.73 kcal Atomic # 6 Polarization: -46.12 SS G_CDS: 2.63 Total: -43.49 kcal Atomic # 7 Polarization: -62.82 SS G_CDS: 0.29 Total: -62.53 kcal Atomic # 8 Polarization: -18.08 SS G_CDS: -1.49 Total: -19.57 kcal Atomic # 14 Polarization: 52.80 SS G_CDS: 1.74 Total: 54.54 kcal Total: -70.43 4.12 -66.31 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710030413.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.473 kcal (2) G-P(sol) polarization free energy of solvation -70.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds