Wall clock time and date at job start Mon Mar 30 2020 02:50:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46909 * 110.99582 * 2 1 4 4 C 1.50699 * 109.47298 * 293.95502 * 3 2 1 5 5 H 1.08005 * 119.99501 * 359.97438 * 4 3 2 6 6 C 1.37874 * 119.99999 * 180.02562 * 4 3 2 7 7 N 1.31515 * 119.99799 * 179.97438 * 6 4 3 8 8 Si 1.86794 * 120.00080 * 0.02562 * 6 4 3 9 9 H 1.48502 * 109.47412 * 89.99745 * 8 6 4 10 10 H 1.48493 * 109.47294 * 210.00100 * 8 6 4 11 11 H 1.48508 * 109.47160 * 330.00114 * 8 6 4 12 12 C 1.46900 * 111.00444 * 123.95396 * 2 1 3 13 13 C 1.52996 * 109.46878 * 66.04610 * 12 2 1 14 14 C 1.53515 * 114.16965 * 185.00128 * 13 12 2 15 15 N 1.47481 * 87.93334 * 220.32733 * 14 13 12 16 16 C 1.47488 * 87.83530 * 27.00963 * 15 14 13 17 17 H 1.09000 * 109.46709 * 296.04005 * 1 2 3 18 18 H 1.08990 * 109.47386 * 56.04405 * 1 2 3 19 19 H 1.09001 * 109.46670 * 176.04963 * 1 2 3 20 20 H 1.08999 * 109.46750 * 53.95688 * 3 2 1 21 21 H 1.09001 * 109.46539 * 173.95660 * 3 2 1 22 22 H 0.97004 * 120.00049 * 179.97438 * 7 6 4 23 23 H 1.08997 * 109.47012 * 306.04888 * 12 2 1 24 24 H 1.08992 * 109.47052 * 186.04754 * 12 2 1 25 25 H 1.09002 * 113.38857 * 318.07963 * 13 12 2 26 26 H 1.09004 * 113.47747 * 105.56637 * 14 13 12 27 27 H 1.08995 * 113.53124 * 335.10698 * 14 13 12 28 28 H 1.00901 * 110.99857 * 138.69928 * 15 14 13 29 29 H 1.08996 * 113.47304 * 87.75121 * 16 15 14 30 30 H 1.08997 * 113.47652 * 218.22256 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0473 -1.2984 5 1 1.0745 1.5113 -2.0488 6 6 2.0275 3.3493 -1.5288 7 7 1.7150 3.9388 -2.6622 8 14 3.0018 4.2755 -0.2319 9 1 4.4540 4.0619 -0.4573 10 1 2.6946 5.7254 -0.3236 11 1 2.6315 3.7753 1.1165 12 6 1.9956 -0.7660 1.1375 13 6 1.6316 -2.2426 0.9703 14 6 2.0257 -3.1260 2.1623 15 7 2.4389 -4.1576 1.1927 16 6 2.6899 -3.0706 0.2279 17 1 -0.3633 0.4512 0.9234 18 1 -0.3633 0.5739 -0.8523 19 1 -0.3633 -1.0253 -0.0708 20 1 1.5610 1.9273 0.8309 21 1 3.0797 1.3445 0.1082 22 1 1.9895 4.8549 -2.8242 23 1 1.5612 -0.3873 2.0627 24 1 3.0798 -0.6610 1.1755 25 1 0.6128 -2.3996 0.6160 26 1 1.1788 -3.4251 2.7799 27 1 2.8527 -2.7238 2.7474 28 1 3.3024 -4.5955 1.4766 29 1 3.6943 -2.6529 0.2961 30 1 2.4059 -3.3226 -0.7938 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710844393.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:13 Heat of formation + Delta-G solvation = 39.355778 kcal Electronic energy + Delta-G solvation = -11308.079743 eV Core-core repulsion = 9332.548650 eV Total energy + Delta-G solvation = -1975.531093 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.59450 -36.32095 -32.49764 -29.56663 -27.52170 -25.73424 -25.47718 -22.76565 -20.18248 -19.30035 -16.92539 -16.11667 -15.54021 -14.75934 -14.41526 -14.00058 -13.39385 -12.86637 -12.46571 -12.34404 -12.02039 -11.53713 -11.22673 -10.97549 -10.73298 -10.45717 -10.35296 -10.08404 -9.83232 -9.29994 -8.95760 -8.57223 -7.35421 -6.05339 -4.02563 3.27399 3.34901 3.36655 4.30719 4.41332 4.46652 4.83633 5.17897 5.28401 5.36391 5.49546 5.70460 5.76517 5.81039 5.98181 6.03997 6.10338 6.17250 6.28167 6.49338 6.71343 6.87030 6.99379 7.25236 7.59110 7.90935 8.05740 8.66320 9.03527 9.56399 11.07839 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.068048 B = 0.009089 C = 0.008742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 411.375002 B = 3079.879307 C = 3202.140616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.530 5.530 3 C 0.161 3.839 4 C -0.509 4.509 5 H 0.081 0.919 6 C 0.068 3.932 7 N -0.901 5.901 8 Si 0.875 3.125 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.269 1.269 12 C 0.061 3.939 13 C -0.106 4.106 14 C 0.001 3.999 15 N -0.634 5.634 16 C 0.013 3.987 17 H 0.010 0.990 18 H 0.080 0.920 19 H 0.050 0.950 20 H -0.012 1.012 21 H 0.022 0.978 22 H 0.263 0.737 23 H 0.026 0.974 24 H 0.067 0.933 25 H 0.103 0.897 26 H 0.079 0.921 27 H 0.063 0.937 28 H 0.314 0.686 29 H 0.065 0.935 30 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.555 -10.242 9.174 13.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.253 5.253 3 C 0.035 3.965 4 C -0.547 4.547 5 H 0.099 0.901 6 C -0.134 4.134 7 N -0.540 5.540 8 Si 0.702 3.298 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.193 1.193 12 C -0.068 4.068 13 C -0.125 4.125 14 C -0.130 4.130 15 N -0.258 5.258 16 C -0.117 4.117 17 H 0.029 0.971 18 H 0.098 0.902 19 H 0.069 0.931 20 H 0.005 0.995 21 H 0.040 0.960 22 H 0.073 0.927 23 H 0.044 0.956 24 H 0.085 0.915 25 H 0.121 0.879 26 H 0.098 0.902 27 H 0.081 0.919 28 H 0.126 0.874 29 H 0.083 0.917 30 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.024 -10.747 8.378 13.665 hybrid contribution 1.188 1.531 1.674 2.561 sum 2.212 -9.216 10.052 13.816 Atomic orbital electron populations 1.22291 0.88312 0.99992 1.00773 1.61920 1.07425 1.16246 1.39759 1.20188 0.94801 0.84251 0.97272 1.21051 1.35584 0.97208 1.00875 0.90073 1.24904 0.95834 0.97367 0.95283 1.69896 1.46956 1.13285 1.23836 0.86865 0.80882 0.79306 0.82719 1.20167 1.21170 1.19346 1.22079 0.99663 0.92294 0.92740 1.22780 1.00468 0.93621 0.95593 1.23643 1.00683 0.92728 0.95904 1.67326 1.31337 1.18885 1.08217 1.23583 0.98448 0.91108 0.98606 0.97122 0.90176 0.93137 0.99460 0.95974 0.92668 0.95607 0.91497 0.87888 0.90236 0.91908 0.87426 0.91679 0.89677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 9.19 60.07 0.55 1.22 16 2 N -0.53 -11.15 4.75 -244.37 -1.16 -12.31 16 3 C 0.16 3.95 3.79 -4.97 -0.02 3.93 16 4 C -0.51 -14.58 9.01 -34.44 -0.31 -14.89 16 5 H 0.08 2.52 7.37 -52.48 -0.39 2.14 16 6 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 7 N -0.90 -27.71 13.96 55.43 0.77 -26.93 16 8 Si 0.87 21.56 27.47 -169.99 -4.67 16.90 16 9 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 12 C 0.06 1.04 4.87 -3.83 -0.02 1.02 16 13 C -0.11 -1.52 4.04 -90.09 -0.36 -1.88 16 14 C 0.00 0.02 8.20 -7.54 -0.06 -0.04 16 15 N -0.63 -7.89 8.71 -122.62 -1.07 -8.96 16 16 C 0.01 0.17 8.19 -7.53 -0.06 0.11 16 17 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 18 H 0.08 1.73 6.76 -51.93 -0.35 1.37 16 19 H 0.05 0.84 6.28 -51.93 -0.33 0.51 16 20 H -0.01 -0.30 7.18 -51.93 -0.37 -0.68 16 21 H 0.02 0.54 7.36 -51.93 -0.38 0.16 16 22 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 23 H 0.03 0.43 8.12 -51.93 -0.42 0.00 16 24 H 0.07 1.11 7.60 -51.93 -0.39 0.71 16 25 H 0.10 1.56 6.27 -51.93 -0.33 1.23 16 26 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.06 0.68 8.10 -51.93 -0.42 0.26 16 28 H 0.31 3.26 8.91 -39.29 -0.35 2.91 16 29 H 0.06 0.85 7.87 -51.93 -0.41 0.44 16 30 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 242.96 15.07 3.66 3.66 Total: -1.00 -30.40 242.96 -7.42 -37.82 By element: Atomic # 1 Polarization: 3.06 SS G_CDS: -4.58 Total: -1.51 kcal Atomic # 6 Polarization: -8.28 SS G_CDS: -0.38 Total: -8.66 kcal Atomic # 7 Polarization: -46.75 SS G_CDS: -1.46 Total: -48.20 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.67 Total: 16.90 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -30.40 -7.42 -37.82 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710844393.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.175 kcal (2) G-P(sol) polarization free energy of solvation -30.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds