Wall clock time and date at job start Mon Mar 30 2020 02:50:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46909 * 110.99582 * 2 1 4 4 C 1.50699 * 109.47298 * 293.95502 * 3 2 1 5 5 H 1.08005 * 119.99501 * 359.97438 * 4 3 2 6 6 C 1.37874 * 119.99999 * 180.02562 * 4 3 2 7 7 N 1.31515 * 119.99799 * 179.97438 * 6 4 3 8 8 Si 1.86794 * 120.00080 * 0.02562 * 6 4 3 9 9 H 1.48502 * 109.47412 * 89.99745 * 8 6 4 10 10 H 1.48493 * 109.47294 * 210.00100 * 8 6 4 11 11 H 1.48508 * 109.47160 * 330.00114 * 8 6 4 12 12 C 1.46900 * 111.00444 * 123.95396 * 2 1 3 13 13 C 1.52996 * 109.46878 * 66.04610 * 12 2 1 14 14 C 1.53515 * 114.16965 * 185.00128 * 13 12 2 15 15 N 1.47481 * 87.93334 * 220.32733 * 14 13 12 16 16 C 1.47488 * 87.83530 * 27.00963 * 15 14 13 17 17 H 1.09000 * 109.46709 * 296.04005 * 1 2 3 18 18 H 1.08990 * 109.47386 * 56.04405 * 1 2 3 19 19 H 1.09001 * 109.46670 * 176.04963 * 1 2 3 20 20 H 1.08999 * 109.46750 * 53.95688 * 3 2 1 21 21 H 1.09001 * 109.46539 * 173.95660 * 3 2 1 22 22 H 0.97004 * 120.00049 * 179.97438 * 7 6 4 23 23 H 1.08997 * 109.47012 * 306.04888 * 12 2 1 24 24 H 1.08992 * 109.47052 * 186.04754 * 12 2 1 25 25 H 1.09002 * 113.38857 * 318.07963 * 13 12 2 26 26 H 1.09004 * 113.47747 * 105.56637 * 14 13 12 27 27 H 1.08995 * 113.53124 * 335.10698 * 14 13 12 28 28 H 1.00901 * 110.99857 * 138.69928 * 15 14 13 29 29 H 1.08996 * 113.47304 * 87.75121 * 16 15 14 30 30 H 1.08997 * 113.47652 * 218.22256 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0473 -1.2984 5 1 1.0745 1.5113 -2.0488 6 6 2.0275 3.3493 -1.5288 7 7 1.7150 3.9388 -2.6622 8 14 3.0018 4.2755 -0.2319 9 1 4.4540 4.0619 -0.4573 10 1 2.6946 5.7254 -0.3236 11 1 2.6315 3.7753 1.1165 12 6 1.9956 -0.7660 1.1375 13 6 1.6316 -2.2426 0.9703 14 6 2.0257 -3.1260 2.1623 15 7 2.4389 -4.1576 1.1927 16 6 2.6899 -3.0706 0.2279 17 1 -0.3633 0.4512 0.9234 18 1 -0.3633 0.5739 -0.8523 19 1 -0.3633 -1.0253 -0.0708 20 1 1.5610 1.9273 0.8309 21 1 3.0797 1.3445 0.1082 22 1 1.9895 4.8549 -2.8242 23 1 1.5612 -0.3873 2.0627 24 1 3.0798 -0.6610 1.1755 25 1 0.6128 -2.3996 0.6160 26 1 1.1788 -3.4251 2.7799 27 1 2.8527 -2.7238 2.7474 28 1 3.3024 -4.5955 1.4766 29 1 3.6943 -2.6529 0.2961 30 1 2.4059 -3.3226 -0.7938 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710844393.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:13 Heat of formation + Delta-G solvation = 14.584346 kcal Electronic energy + Delta-G solvation = -11309.153913 eV Core-core repulsion = 9332.548650 eV Total energy + Delta-G solvation = -1976.605263 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.68212 -37.92807 -34.65002 -31.11648 -29.25717 -27.09376 -26.65262 -24.39854 -21.94366 -20.39250 -19.02548 -17.26621 -16.78155 -16.37088 -16.23892 -15.64707 -14.65222 -14.53094 -14.24554 -13.65453 -13.31796 -13.17401 -12.89788 -12.56111 -12.42230 -12.00948 -11.82497 -11.70806 -11.37984 -11.23562 -10.78404 -9.94481 -8.99813 -8.28440 -6.32119 1.34546 1.36154 1.46819 2.34274 3.04314 3.14533 3.31900 3.67807 3.93517 4.36513 4.39581 4.46724 4.54719 4.64950 4.68331 4.72660 4.87820 4.94257 4.96259 5.03376 5.11967 5.19286 5.36880 5.52803 5.99525 6.35048 6.38226 6.66900 6.74599 7.31636 8.88294 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.068048 B = 0.009089 C = 0.008742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 411.375002 B = 3079.879307 C = 3202.140616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.548 5.548 3 C 0.171 3.829 4 C -0.518 4.518 5 H 0.037 0.963 6 C 0.006 3.994 7 N -0.949 5.949 8 Si 0.949 3.051 9 H -0.264 1.264 10 H -0.282 1.282 11 H -0.251 1.251 12 C 0.064 3.936 13 C -0.110 4.110 14 C 0.014 3.986 15 N -0.640 5.640 16 C 0.012 3.988 17 H 0.019 0.981 18 H 0.046 0.954 19 H 0.078 0.922 20 H -0.012 1.012 21 H 0.029 0.971 22 H 0.267 0.733 23 H 0.035 0.965 24 H 0.072 0.928 25 H 0.094 0.906 26 H 0.089 0.911 27 H 0.080 0.920 28 H 0.329 0.671 29 H 0.072 0.928 30 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.597 -10.934 11.558 16.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.272 5.272 3 C 0.044 3.956 4 C -0.557 4.557 5 H 0.055 0.945 6 C -0.191 4.191 7 N -0.590 5.590 8 Si 0.772 3.228 9 H -0.189 1.189 10 H -0.207 1.207 11 H -0.175 1.175 12 C -0.064 4.064 13 C -0.129 4.129 14 C -0.117 4.117 15 N -0.265 5.265 16 C -0.118 4.118 17 H 0.038 0.962 18 H 0.065 0.935 19 H 0.096 0.904 20 H 0.005 0.995 21 H 0.047 0.953 22 H 0.076 0.924 23 H 0.054 0.946 24 H 0.090 0.910 25 H 0.112 0.888 26 H 0.108 0.892 27 H 0.098 0.902 28 H 0.142 0.858 29 H 0.090 0.910 30 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.064 -11.475 10.777 15.877 hybrid contribution 0.807 1.659 0.864 2.037 sum 2.872 -9.817 11.641 15.496 Atomic orbital electron populations 1.22217 0.87672 1.01239 0.99676 1.61819 1.08228 1.14589 1.42559 1.19951 0.95112 0.85958 0.94621 1.21298 1.34933 0.97584 1.01863 0.94458 1.25878 0.97056 0.98437 0.97734 1.70056 1.48653 1.13930 1.26333 0.85689 0.79417 0.77621 0.80049 1.18883 1.20714 1.17489 1.22146 0.99813 0.93048 0.91390 1.22722 1.00178 0.92293 0.97704 1.23612 1.01554 0.91483 0.95044 1.67282 1.32345 1.18703 1.08145 1.23557 0.98535 0.91532 0.98221 0.96220 0.93515 0.90385 0.99480 0.95317 0.92413 0.94639 0.90982 0.88785 0.89220 0.90165 0.85842 0.91006 0.91010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.54 9.19 127.69 1.17 2.72 16 2 N -0.55 -22.59 4.75 -927.06 -4.41 -27.00 16 3 C 0.17 8.21 3.79 85.56 0.32 8.54 16 4 C -0.52 -30.34 9.01 25.60 0.23 -30.11 16 5 H 0.04 2.44 7.37 -2.91 -0.02 2.42 16 6 C 0.01 0.36 5.47 84.65 0.46 0.82 16 7 N -0.95 -59.79 13.96 21.45 0.30 -59.49 16 8 Si 0.95 44.00 27.47 68.60 1.88 45.88 16 9 H -0.26 -11.68 7.11 99.48 0.71 -10.98 16 10 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 11 H -0.25 -10.85 6.54 99.48 0.65 -10.20 16 12 C 0.06 2.02 4.87 86.30 0.42 2.44 16 13 C -0.11 -2.90 4.04 -10.45 -0.04 -2.95 16 14 C 0.01 0.28 8.20 83.58 0.69 0.97 16 15 N -0.64 -14.15 8.71 -541.87 -4.72 -18.88 16 16 C 0.01 0.30 8.19 83.58 0.68 0.98 16 17 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 18 H 0.05 2.08 6.76 -2.39 -0.02 2.06 16 19 H 0.08 2.53 6.28 -2.39 -0.01 2.51 16 20 H -0.01 -0.60 7.18 -2.39 -0.02 -0.61 16 21 H 0.03 1.34 7.36 -2.39 -0.02 1.33 16 22 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 23 H 0.04 1.06 8.12 -2.39 -0.02 1.04 16 24 H 0.07 2.18 7.60 -2.39 -0.02 2.16 16 25 H 0.09 2.66 6.27 -2.39 -0.01 2.65 16 26 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.08 1.40 8.10 -2.39 -0.02 1.38 16 28 H 0.33 5.82 8.91 -89.69 -0.80 5.02 16 29 H 0.07 1.71 7.87 -2.39 -0.02 1.70 16 30 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -65.74 242.96 -2.75 -68.48 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: 0.26 Total: 7.59 kcal Atomic # 6 Polarization: -20.53 SS G_CDS: 3.94 Total: -16.59 kcal Atomic # 7 Polarization: -96.54 SS G_CDS: -8.83 Total: -105.37 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 1.88 Total: 45.88 kcal Total: -65.74 -2.75 -68.48 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710844393.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.067 kcal (2) G-P(sol) polarization free energy of solvation -65.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds