Wall clock time and date at job start Mon Mar 30 2020 02:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46906 * 109.46942 * 2 1 4 4 C 1.47472 * 111.00187 * 91.52741 * 3 2 1 5 5 C 1.53512 * 87.93533 * 138.70221 * 4 3 2 6 6 C 1.47475 * 110.99695 * 187.50222 * 3 2 1 7 7 H 1.09003 * 113.47854 * 336.05764 * 6 3 2 8 8 C 1.53003 * 113.47810 * 106.53223 * 6 3 2 9 9 N 1.46500 * 109.46971 * 304.99307 * 8 6 3 10 10 C 1.36935 * 120.00086 * 179.97438 * 9 8 6 11 11 H 1.08001 * 119.99854 * 0.02562 * 10 9 8 12 12 C 1.38817 * 120.00029 * 180.02562 * 10 9 8 13 13 N 1.31618 * 119.99814 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 119.99862 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47011 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.47010 * 120.00431 * 14 12 10 17 17 H 1.48507 * 109.46695 * 239.99893 * 14 12 10 18 18 H 1.09004 * 109.46639 * 300.00089 * 1 2 3 19 19 H 1.08991 * 109.47108 * 59.99747 * 1 2 3 20 20 H 1.09002 * 109.46992 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46891 * 240.00361 * 2 1 3 22 22 H 1.08997 * 109.47208 * 119.99525 * 2 1 3 23 23 H 1.08998 * 113.48140 * 253.47102 * 4 3 2 24 24 H 1.09007 * 113.47537 * 23.93571 * 4 3 2 25 25 H 1.08998 * 114.17034 * 87.62025 * 5 4 3 26 26 H 1.08995 * 114.17400 * 220.14249 * 5 4 3 27 27 H 1.08997 * 109.47214 * 64.99970 * 8 6 3 28 28 H 1.09000 * 109.47021 * 184.99969 * 8 6 3 29 29 H 0.97002 * 120.00019 * 0.02562 * 9 8 6 30 30 H 0.97003 * 119.99589 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3851 0.0000 4 6 2.2304 1.8711 1.3763 5 6 3.5250 2.5337 0.8847 6 6 3.4828 1.4283 -0.1798 7 1 3.9853 0.5109 0.1268 8 6 3.9124 1.9035 -1.5692 9 7 3.2755 1.0674 -2.5898 10 6 3.5129 1.3069 -3.9170 11 1 4.1700 2.1119 -4.2113 12 6 2.9090 0.5151 -4.8840 13 7 2.1078 -0.4656 -4.5253 14 14 3.2334 0.8414 -6.6945 15 1 4.1626 1.9916 -6.8314 16 1 3.8419 -0.3636 -7.3134 17 1 1.9530 1.1558 -7.3779 18 1 -0.3633 0.5139 0.8900 19 1 -0.3633 0.5138 -0.8899 20 1 -0.3633 -1.0277 0.0005 21 1 1.8933 -0.5138 -0.8900 22 1 1.8934 -0.5137 0.8900 23 1 1.4752 2.5849 1.7052 24 1 2.3987 1.0718 2.0981 25 1 3.3888 3.5400 0.4887 26 1 4.3593 2.4547 1.5816 27 1 3.6091 2.9411 -1.7082 28 1 4.9959 1.8263 -1.6607 29 1 2.6851 0.3447 -2.3254 30 1 1.6861 -1.0192 -5.2011 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712545912.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:37 Heat of formation + Delta-G solvation = 44.521469 kcal Electronic energy + Delta-G solvation = -11507.639151 eV Core-core repulsion = 9532.332060 eV Total energy + Delta-G solvation = -1975.307092 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.83305 -34.23772 -32.44227 -30.91660 -27.17081 -26.83527 -23.54825 -21.90535 -21.24990 -19.29537 -17.08606 -15.80492 -14.95515 -14.77371 -14.03115 -13.40545 -13.15519 -12.80317 -12.55978 -11.99525 -11.78278 -11.42738 -10.99858 -10.90569 -10.74366 -10.49570 -10.26497 -10.15939 -9.70042 -9.55709 -8.78449 -8.40500 -6.78691 -5.67216 -2.93693 3.48814 3.54071 3.56578 4.33795 4.66464 4.79467 5.09854 5.37262 5.52979 5.57085 5.65662 5.76888 5.80588 5.94526 5.97274 6.01079 6.18393 6.27956 6.40286 6.48505 6.66498 6.73904 6.87352 6.99372 7.57363 7.78855 8.52912 9.63790 10.24794 10.60138 11.56279 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.052152 B = 0.011073 C = 0.009475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.767995 B = 2528.093249 C = 2954.468578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.015 3.985 3 N -0.452 5.452 4 C -0.007 4.007 5 C -0.140 4.140 6 C 0.022 3.978 7 H 0.071 0.929 8 C 0.169 3.831 9 N -0.728 5.728 10 C -0.233 4.233 11 H 0.070 0.930 12 C -0.017 4.017 13 N -0.935 5.935 14 Si 0.906 3.094 15 H -0.281 1.281 16 H -0.293 1.293 17 H -0.292 1.292 18 H 0.044 0.956 19 H 0.066 0.934 20 H 0.052 0.948 21 H 0.086 0.914 22 H 0.033 0.967 23 H 0.078 0.922 24 H 0.061 0.939 25 H 0.092 0.908 26 H 0.069 0.931 27 H 0.024 0.976 28 H 0.019 0.981 29 H 0.385 0.615 30 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.556 2.629 11.423 11.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.113 4.113 3 N -0.175 5.175 4 C -0.137 4.137 5 C -0.178 4.178 6 C -0.087 4.087 7 H 0.089 0.911 8 C 0.041 3.959 9 N -0.372 5.372 10 C -0.365 4.365 11 H 0.088 0.912 12 C -0.213 4.213 13 N -0.584 5.584 14 Si 0.737 3.263 15 H -0.206 1.206 16 H -0.220 1.220 17 H -0.220 1.220 18 H 0.063 0.937 19 H 0.085 0.915 20 H 0.071 0.929 21 H 0.104 0.896 22 H 0.051 0.949 23 H 0.097 0.903 24 H 0.079 0.921 25 H 0.111 0.889 26 H 0.088 0.912 27 H 0.042 0.958 28 H 0.037 0.963 29 H 0.219 0.781 30 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.149 3.021 10.793 11.209 hybrid contribution 0.366 -0.740 -0.416 0.924 sum 0.515 2.281 10.377 10.638 Atomic orbital electron populations 1.21597 0.94936 1.00910 1.02013 1.22683 0.96929 0.90581 1.01139 1.68950 1.13322 1.19255 1.15944 1.23815 0.97795 0.99478 0.92572 1.23182 0.97229 0.99414 0.97996 1.23591 0.90048 0.97728 0.97354 0.91099 1.20603 0.94866 0.94582 0.85864 1.42311 1.55951 1.37498 1.01474 1.19316 1.22317 1.11844 0.82976 0.91240 1.24714 1.00177 0.98549 0.97829 1.69673 1.34975 1.21680 1.32074 0.86122 0.77259 0.77194 0.85690 1.20618 1.22023 1.21966 0.93713 0.91482 0.92875 0.89593 0.94919 0.90340 0.92105 0.88912 0.91207 0.95786 0.96323 0.78057 0.93743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 10.23 37.16 0.38 -1.82 16 2 C 0.02 0.27 5.27 -3.82 -0.02 0.25 16 3 N -0.45 -8.11 5.90 -236.50 -1.40 -9.51 16 4 C -0.01 -0.10 7.70 -7.55 -0.06 -0.16 16 5 C -0.14 -1.94 8.00 -26.20 -0.21 -2.15 16 6 C 0.02 0.40 3.25 -71.43 -0.23 0.16 16 7 H 0.07 1.22 7.91 -51.93 -0.41 0.81 16 8 C 0.17 3.67 6.40 -4.04 -0.03 3.64 16 9 N -0.73 -19.55 5.51 -59.91 -0.33 -19.88 16 10 C -0.23 -6.84 9.99 -15.06 -0.15 -6.99 16 11 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 12 C -0.02 -0.51 5.50 -17.43 -0.10 -0.61 16 13 N -0.93 -29.10 13.06 55.49 0.72 -28.38 16 14 Si 0.91 23.13 29.55 -169.99 -5.02 18.11 16 15 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 16 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 17 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 18 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 19 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 20 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 21 H 0.09 1.78 6.25 -51.93 -0.32 1.45 16 22 H 0.03 0.50 7.35 -51.93 -0.38 0.12 16 23 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 24 H 0.06 0.76 7.45 -51.92 -0.39 0.38 16 25 H 0.09 1.29 7.94 -51.93 -0.41 0.88 16 26 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.02 0.54 7.87 -51.93 -0.41 0.13 16 28 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.38 10.69 5.39 -40.82 -0.22 10.47 16 30 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 246.83 15.07 3.72 3.72 Total: -1.00 -31.62 246.83 -7.34 -38.96 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -4.63 Total: 4.65 kcal Atomic # 6 Polarization: -7.26 SS G_CDS: -0.41 Total: -7.67 kcal Atomic # 7 Polarization: -56.77 SS G_CDS: -1.00 Total: -57.77 kcal Atomic # 14 Polarization: 23.13 SS G_CDS: -5.02 Total: 18.11 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -31.62 -7.34 -38.96 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712545912.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.486 kcal (2) G-P(sol) polarization free energy of solvation -31.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds