Wall clock time and date at job start Mon Mar 30 2020 02:36:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46906 * 109.46942 * 2 1 4 4 C 1.47472 * 111.00187 * 91.52741 * 3 2 1 5 5 C 1.53512 * 87.93533 * 138.70221 * 4 3 2 6 6 C 1.47475 * 110.99695 * 187.50222 * 3 2 1 7 7 H 1.09003 * 113.47854 * 336.05764 * 6 3 2 8 8 C 1.53003 * 113.47810 * 106.53223 * 6 3 2 9 9 N 1.46500 * 109.46971 * 304.99307 * 8 6 3 10 10 C 1.36935 * 120.00086 * 179.97438 * 9 8 6 11 11 H 1.08001 * 119.99854 * 0.02562 * 10 9 8 12 12 C 1.38817 * 120.00029 * 180.02562 * 10 9 8 13 13 N 1.31618 * 119.99814 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 119.99862 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47011 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.47010 * 120.00431 * 14 12 10 17 17 H 1.48507 * 109.46695 * 239.99893 * 14 12 10 18 18 H 1.09004 * 109.46639 * 300.00089 * 1 2 3 19 19 H 1.08991 * 109.47108 * 59.99747 * 1 2 3 20 20 H 1.09002 * 109.46992 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46891 * 240.00361 * 2 1 3 22 22 H 1.08997 * 109.47208 * 119.99525 * 2 1 3 23 23 H 1.08998 * 113.48140 * 253.47102 * 4 3 2 24 24 H 1.09007 * 113.47537 * 23.93571 * 4 3 2 25 25 H 1.08998 * 114.17034 * 87.62025 * 5 4 3 26 26 H 1.08995 * 114.17400 * 220.14249 * 5 4 3 27 27 H 1.08997 * 109.47214 * 64.99970 * 8 6 3 28 28 H 1.09000 * 109.47021 * 184.99969 * 8 6 3 29 29 H 0.97002 * 120.00019 * 0.02562 * 9 8 6 30 30 H 0.97003 * 119.99589 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3851 0.0000 4 6 2.2304 1.8711 1.3763 5 6 3.5250 2.5337 0.8847 6 6 3.4828 1.4283 -0.1798 7 1 3.9853 0.5109 0.1268 8 6 3.9124 1.9035 -1.5692 9 7 3.2755 1.0674 -2.5898 10 6 3.5129 1.3069 -3.9170 11 1 4.1700 2.1119 -4.2113 12 6 2.9090 0.5151 -4.8840 13 7 2.1078 -0.4656 -4.5253 14 14 3.2334 0.8414 -6.6945 15 1 4.1626 1.9916 -6.8314 16 1 3.8419 -0.3636 -7.3134 17 1 1.9530 1.1558 -7.3779 18 1 -0.3633 0.5139 0.8900 19 1 -0.3633 0.5138 -0.8899 20 1 -0.3633 -1.0277 0.0005 21 1 1.8933 -0.5138 -0.8900 22 1 1.8934 -0.5137 0.8900 23 1 1.4752 2.5849 1.7052 24 1 2.3987 1.0718 2.0981 25 1 3.3888 3.5400 0.4887 26 1 4.3593 2.4547 1.5816 27 1 3.6091 2.9411 -1.7082 28 1 4.9959 1.8263 -1.6607 29 1 2.6851 0.3447 -2.3254 30 1 1.6861 -1.0192 -5.2011 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712545912.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:36 Heat of formation + Delta-G solvation = 20.991812 kcal Electronic energy + Delta-G solvation = -11508.659474 eV Core-core repulsion = 9532.332060 eV Total energy + Delta-G solvation = -1976.327414 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.12579 -36.27262 -33.83737 -32.93907 -28.91973 -28.11199 -25.45956 -23.42140 -22.71064 -20.61617 -19.19264 -17.10220 -16.75513 -16.40078 -15.65881 -15.08002 -14.80207 -14.53302 -14.08094 -13.29093 -13.18983 -12.99469 -12.89811 -12.68827 -12.23900 -12.07648 -12.03593 -11.57577 -11.50629 -11.21100 -10.91666 -9.69423 -8.95737 -7.93739 -5.21377 1.45479 1.47300 1.57412 2.55899 3.07807 3.39470 3.57543 3.84085 4.01485 4.26536 4.36849 4.41007 4.49515 4.53033 4.69844 4.80280 4.87116 4.92244 5.02258 5.09462 5.20673 5.25085 5.38930 5.47471 5.61322 6.27971 6.29713 7.35257 8.14604 8.38825 9.30346 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.052152 B = 0.011073 C = 0.009475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.767995 B = 2528.093249 C = 2954.468578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.018 3.982 3 N -0.485 5.485 4 C 0.001 3.999 5 C -0.121 4.121 6 C 0.018 3.982 7 H 0.075 0.925 8 C 0.164 3.836 9 N -0.742 5.742 10 C -0.245 4.245 11 H 0.074 0.926 12 C -0.079 4.079 13 N -0.970 5.970 14 Si 0.975 3.025 15 H -0.266 1.266 16 H -0.291 1.291 17 H -0.294 1.294 18 H 0.067 0.933 19 H 0.035 0.965 20 H 0.065 0.935 21 H 0.043 0.957 22 H 0.058 0.942 23 H 0.090 0.910 24 H 0.082 0.918 25 H 0.090 0.910 26 H 0.101 0.899 27 H 0.018 0.982 28 H 0.023 0.977 29 H 0.377 0.623 30 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.048 3.377 12.629 13.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.110 4.110 3 N -0.209 5.209 4 C -0.128 4.128 5 C -0.159 4.159 6 C -0.092 4.092 7 H 0.093 0.907 8 C 0.037 3.963 9 N -0.386 5.386 10 C -0.377 4.377 11 H 0.092 0.908 12 C -0.271 4.271 13 N -0.621 5.621 14 Si 0.804 3.196 15 H -0.190 1.190 16 H -0.218 1.218 17 H -0.221 1.221 18 H 0.086 0.914 19 H 0.054 0.946 20 H 0.084 0.916 21 H 0.062 0.938 22 H 0.076 0.924 23 H 0.109 0.891 24 H 0.100 0.900 25 H 0.109 0.891 26 H 0.120 0.880 27 H 0.036 0.964 28 H 0.041 0.959 29 H 0.210 0.790 30 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 0.664 3.800 12.028 12.631 hybrid contribution 0.230 -0.945 -0.740 1.222 sum 0.895 2.855 11.288 11.678 Atomic orbital electron populations 1.21543 0.94120 1.01648 1.01503 1.22610 0.97606 0.90636 1.00176 1.68929 1.13316 1.19441 1.19187 1.23871 0.98047 1.00019 0.90843 1.23137 0.98409 0.97821 0.96580 1.23587 0.90315 0.99514 0.95796 0.90747 1.20796 0.94684 0.93539 0.87264 1.42562 1.56156 1.38024 1.01845 1.19734 1.21899 1.11626 0.84466 0.90834 1.25588 1.00458 0.98670 1.02345 1.69842 1.36220 1.22765 1.33248 0.85038 0.77094 0.77375 0.80050 1.19032 1.21842 1.22080 0.91409 0.94605 0.91596 0.93844 0.92407 0.89118 0.90000 0.89111 0.88044 0.96401 0.95886 0.78986 0.94113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.11 10.23 71.98 0.74 -3.37 16 2 C 0.02 0.63 5.27 86.30 0.46 1.09 16 3 N -0.49 -16.87 5.90 -902.16 -5.32 -22.20 16 4 C 0.00 0.02 7.70 83.57 0.64 0.66 16 5 C -0.12 -2.99 8.00 30.94 0.25 -2.74 16 6 C 0.02 0.60 3.25 42.19 0.14 0.74 16 7 H 0.07 2.46 7.91 -2.39 -0.02 2.44 16 8 C 0.16 7.11 6.40 86.38 0.55 7.66 16 9 N -0.74 -40.63 5.51 -343.45 -1.89 -42.52 16 10 C -0.25 -14.54 9.99 84.03 0.84 -13.70 16 11 H 0.07 4.19 7.83 -2.91 -0.02 4.16 16 12 C -0.08 -4.73 5.50 84.86 0.47 -4.26 16 13 N -0.97 -61.73 13.06 21.65 0.28 -61.45 16 14 Si 0.98 47.97 29.55 68.60 2.03 49.99 16 15 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 16 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 17 H -0.29 -14.40 7.11 99.48 0.71 -13.69 16 18 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 19 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 20 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 21 H 0.04 1.86 6.25 -2.39 -0.01 1.84 16 22 H 0.06 1.66 7.35 -2.39 -0.02 1.64 16 23 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 24 H 0.08 1.70 7.45 -2.38 -0.02 1.68 16 25 H 0.09 2.29 7.94 -2.39 -0.02 2.27 16 26 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.02 0.80 7.87 -2.39 -0.02 0.78 16 28 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.38 21.64 5.39 -92.71 -0.50 21.14 16 30 H 0.25 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -68.34 246.83 -0.22 -68.56 By element: Atomic # 1 Polarization: 20.93 SS G_CDS: 0.60 Total: 21.54 kcal Atomic # 6 Polarization: -18.00 SS G_CDS: 4.08 Total: -13.92 kcal Atomic # 7 Polarization: -119.24 SS G_CDS: -6.93 Total: -126.17 kcal Atomic # 14 Polarization: 47.97 SS G_CDS: 2.03 Total: 49.99 kcal Total: -68.34 -0.22 -68.56 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712545912.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.556 kcal (2) G-P(sol) polarization free energy of solvation -68.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds