Wall clock time and date at job start Mon Mar 30 2020 02:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.48562 * 111.00077 * 2 1 4 4 C 1.54379 * 104.69842 * 201.02102 * 3 2 1 5 5 C 1.54260 * 105.06282 * 23.79326 * 4 3 2 6 6 C 1.53000 * 110.32234 * 118.89451 * 5 4 3 7 7 N 1.46494 * 110.32438 * 241.10105 * 5 4 3 8 8 C 1.36942 * 120.00163 * 179.97438 * 7 5 4 9 9 H 1.08003 * 119.99531 * 0.02562 * 8 7 5 10 10 C 1.38807 * 119.99940 * 180.02562 * 8 7 5 11 11 N 1.31626 * 119.99724 * 180.02562 * 10 8 7 12 12 Si 1.86798 * 120.00367 * 0.02562 * 10 8 7 13 13 H 1.48499 * 109.47114 * 89.99863 * 12 10 8 14 14 H 1.48495 * 109.47226 * 210.00006 * 12 10 8 15 15 H 1.48496 * 109.46841 * 330.00258 * 12 10 8 16 16 C 1.48676 * 111.10990 * 244.58285 * 2 1 3 17 17 H 1.08994 * 109.47282 * 59.87305 * 1 2 3 18 18 H 1.09005 * 109.46824 * 179.87403 * 1 2 3 19 19 H 1.08997 * 109.47169 * 299.86921 * 1 2 3 20 20 H 1.09002 * 110.41176 * 82.18197 * 3 2 1 21 21 H 1.09002 * 110.41204 * 319.86103 * 3 2 1 22 22 H 1.09001 * 110.32380 * 142.69334 * 4 3 2 23 23 H 1.08997 * 110.32306 * 264.89547 * 4 3 2 24 24 H 1.09002 * 109.47163 * 60.00317 * 6 5 4 25 25 H 1.08998 * 109.46999 * 180.02562 * 6 5 4 26 26 H 1.09005 * 109.47200 * 299.99851 * 6 5 4 27 27 H 0.96999 * 120.00234 * 0.02562 * 7 5 4 28 28 H 0.96998 * 119.99703 * 180.02562 * 11 10 8 29 29 H 1.09005 * 110.30200 * 40.13251 * 16 2 1 30 30 H 1.08998 * 110.44307 * 277.74157 * 16 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0014 1.3869 0.0000 4 6 3.4431 1.2531 -0.5357 5 6 3.4451 -0.0509 -1.3598 6 6 3.7947 0.2438 -2.8198 7 7 4.3952 -1.0104 -0.7916 8 6 4.5556 -2.2405 -1.3718 9 1 3.9820 -2.5030 -2.2484 10 6 5.4555 -3.1498 -0.8331 11 7 5.6101 -4.3319 -1.3910 12 14 6.4471 -2.6960 0.6835 13 1 5.6975 -3.0936 1.9022 14 1 7.7519 -3.4041 0.6520 15 1 6.6799 -1.2295 0.7021 16 6 2.0044 -0.5953 -1.2527 17 1 -0.3633 0.5158 -0.8888 18 1 -0.3633 -1.0277 -0.0023 19 1 -0.3633 0.5118 0.8911 20 1 2.0079 1.7916 1.0121 21 1 1.4085 2.0217 -0.6586 22 1 3.6912 2.1031 -1.1713 23 1 4.1490 1.1792 0.2916 24 1 4.7838 0.6989 -2.8719 25 1 3.7917 -0.6859 -3.3889 26 1 3.0572 0.9283 -3.2390 27 1 4.9101 -0.7748 -0.0041 28 1 6.2386 -4.9675 -1.0144 29 1 1.4115 -0.2724 -2.1085 30 1 2.0132 -1.6831 -1.1839 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716600647.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:41 Heat of formation + Delta-G solvation = -2.047370 kcal Electronic energy + Delta-G solvation = -11777.356219 eV Core-core repulsion = 9800.029750 eV Total energy + Delta-G solvation = -1977.326468 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.25401 -36.34064 -33.96971 -31.72083 -30.19577 -27.80877 -26.06470 -24.51523 -22.11109 -20.28702 -19.57862 -17.12561 -16.32917 -16.30168 -15.60242 -15.01518 -14.69245 -14.23043 -13.90229 -13.68028 -13.33073 -12.93723 -12.85489 -12.45077 -12.32278 -12.11136 -11.96380 -11.85497 -11.72353 -11.33364 -10.92156 -9.32190 -9.23999 -7.96417 -5.27489 1.39234 1.43422 1.49405 2.53133 3.20681 3.35490 3.57277 3.81259 3.95922 4.30690 4.41404 4.43121 4.57424 4.66447 4.76981 4.87783 4.95804 4.99293 5.00524 5.05963 5.18859 5.41470 5.48842 5.85497 5.99361 6.21428 6.29527 7.14927 7.93108 8.10831 9.25460 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.046602 B = 0.013046 C = 0.012895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.684778 B = 2145.737374 C = 2170.831260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.537 5.537 3 C 0.038 3.962 4 C -0.121 4.121 5 C 0.185 3.815 6 C -0.140 4.140 7 N -0.739 5.739 8 C -0.210 4.210 9 H 0.059 0.941 10 C -0.069 4.069 11 N -0.988 5.988 12 Si 0.953 3.047 13 H -0.285 1.285 14 H -0.299 1.299 15 H -0.252 1.252 16 C 0.031 3.969 17 H 0.036 0.964 18 H 0.058 0.942 19 H 0.082 0.918 20 H 0.089 0.911 21 H 0.060 0.940 22 H 0.096 0.904 23 H 0.066 0.934 24 H 0.054 0.946 25 H 0.031 0.969 26 H 0.073 0.927 27 H 0.363 0.637 28 H 0.255 0.745 29 H 0.047 0.953 30 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.599 14.307 2.377 16.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.261 5.261 3 C -0.089 4.089 4 C -0.160 4.160 5 C 0.095 3.905 6 C -0.200 4.200 7 N -0.382 5.382 8 C -0.341 4.341 9 H 0.077 0.923 10 C -0.260 4.260 11 N -0.640 5.640 12 Si 0.781 3.219 13 H -0.212 1.212 14 H -0.226 1.226 15 H -0.177 1.177 16 C -0.099 4.099 17 H 0.054 0.946 18 H 0.077 0.923 19 H 0.101 0.899 20 H 0.107 0.893 21 H 0.078 0.922 22 H 0.114 0.886 23 H 0.084 0.916 24 H 0.073 0.927 25 H 0.050 0.950 26 H 0.092 0.908 27 H 0.197 0.803 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -7.485 13.861 2.717 15.985 hybrid contribution 0.443 -0.261 0.012 0.514 sum -7.042 13.600 2.729 15.556 Atomic orbital electron populations 1.22514 0.87218 1.01949 1.01514 1.65284 1.09026 1.16139 1.35663 1.23125 0.94546 0.89528 1.01736 1.22610 0.97277 0.96535 0.99537 1.20600 0.87903 0.88900 0.93077 1.22106 1.01355 1.00408 0.96099 1.42887 1.47977 1.13905 1.33412 1.18925 1.16911 0.90439 1.07836 0.92323 1.25412 1.01906 0.96110 1.02526 1.69884 1.41401 1.08235 1.44459 0.85433 0.77807 0.78523 0.80125 1.21219 1.22600 1.17679 1.23572 0.96489 0.99418 0.90409 0.94557 0.92341 0.89928 0.89263 0.92161 0.88562 0.91564 0.92685 0.94988 0.90781 0.80297 0.93672 0.93471 0.93259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 9.53 127.69 1.22 1.64 16 2 N -0.54 -17.32 5.66 -907.30 -5.14 -22.45 16 3 C 0.04 0.98 6.49 86.45 0.56 1.54 16 4 C -0.12 -3.51 6.43 31.49 0.20 -3.30 16 5 C 0.19 6.96 1.14 4.50 0.01 6.96 16 6 C -0.14 -4.89 8.22 71.98 0.59 -4.30 16 7 N -0.74 -34.95 4.99 -299.31 -1.49 -36.45 16 8 C -0.21 -12.02 8.91 84.03 0.75 -11.28 16 9 H 0.06 3.67 7.39 -2.91 -0.02 3.65 16 10 C -0.07 -4.15 5.50 84.86 0.47 -3.68 16 11 N -0.99 -64.66 13.97 21.65 0.30 -64.36 16 12 Si 0.95 47.14 27.74 68.60 1.90 49.04 16 13 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 14 H -0.30 -14.96 7.11 99.48 0.71 -14.25 16 15 H -0.25 -11.24 6.52 99.48 0.65 -10.59 16 16 C 0.03 1.15 5.66 86.43 0.49 1.64 16 17 H 0.04 0.81 7.98 -2.39 -0.02 0.79 16 18 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 19 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 20 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 21 H 0.06 1.29 7.97 -2.39 -0.02 1.27 16 22 H 0.10 2.25 7.71 -2.39 -0.02 2.23 16 23 H 0.07 2.00 7.49 -2.39 -0.02 1.98 16 24 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 25 H 0.03 1.28 7.16 -2.39 -0.02 1.27 16 26 H 0.07 2.03 8.10 -2.38 -0.02 2.01 16 27 H 0.36 16.84 5.17 -92.71 -0.48 16.36 16 28 H 0.25 15.95 8.31 -92.71 -0.77 15.18 16 29 H 0.05 1.56 7.59 -2.38 -0.02 1.54 16 30 H 0.05 2.26 7.32 -2.39 -0.02 2.24 16 Total: -1.00 -68.00 239.72 0.42 -67.58 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: 0.57 Total: 17.41 kcal Atomic # 6 Polarization: -15.06 SS G_CDS: 4.28 Total: -10.78 kcal Atomic # 7 Polarization: -116.93 SS G_CDS: -6.33 Total: -123.26 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 1.90 Total: 49.04 kcal Total: -68.00 0.42 -67.58 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716600647.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.534 kcal (2) G-P(sol) polarization free energy of solvation -68.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds