Wall clock time and date at job start Mon Mar 30 2020 02:12:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.48531 * 111.00046 * 2 1 4 4 C 1.55195 * 103.23627 * 200.25519 * 3 2 1 5 5 C 1.54593 * 102.80550 * 37.43970 * 4 3 2 6 6 C 1.52996 * 110.30817 * 219.05049 * 5 4 3 7 7 N 1.46499 * 110.31060 * 96.97726 * 5 4 3 8 8 C 1.36939 * 119.99933 * 181.66698 * 7 5 4 9 9 H 1.08001 * 119.99700 * 359.72658 * 8 7 5 10 10 C 1.38810 * 120.00095 * 179.71972 * 8 7 5 11 11 N 1.31612 * 120.00054 * 179.97438 * 10 8 7 12 12 Si 1.86800 * 119.99751 * 0.02562 * 10 8 7 13 13 H 1.48500 * 109.47517 * 89.99708 * 12 10 8 14 14 H 1.48502 * 109.46736 * 209.99481 * 12 10 8 15 15 H 1.48496 * 109.47375 * 329.99177 * 12 10 8 16 16 C 1.47904 * 111.00071 * 242.60471 * 2 1 3 17 17 H 1.08997 * 109.47359 * 177.39195 * 1 2 3 18 18 H 1.09001 * 109.47427 * 297.39409 * 1 2 3 19 19 H 1.09006 * 109.47025 * 57.39378 * 1 2 3 20 20 H 1.08992 * 110.67084 * 318.71482 * 3 2 1 21 21 H 1.08999 * 110.66299 * 81.67993 * 3 2 1 22 22 H 1.09000 * 110.76603 * 279.12726 * 4 3 2 23 23 H 1.09008 * 110.79738 * 155.76536 * 4 3 2 24 24 H 1.09002 * 109.47210 * 298.60576 * 6 5 4 25 25 H 1.08995 * 109.47684 * 58.60732 * 6 5 4 26 26 H 1.09003 * 109.47027 * 178.60734 * 6 5 4 27 27 H 0.97001 * 119.99790 * 1.38671 * 7 5 4 28 28 H 0.96998 * 120.00381 * 180.02562 * 11 10 8 29 29 H 1.08998 * 109.91626 * 26.49382 * 16 2 1 30 30 H 1.08993 * 110.08617 * 265.29205 * 16 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 2.0012 1.3867 0.0000 4 6 3.4517 1.2105 -0.5230 5 6 3.2983 0.1054 -1.5931 6 6 4.4892 -0.8536 -1.5407 7 7 3.1845 0.7012 -2.9267 8 6 3.0056 -0.1010 -4.0220 9 1 2.9528 -1.1732 -3.9032 10 6 2.8920 0.4638 -5.2849 11 7 2.7206 -0.3072 -6.3376 12 14 2.9838 2.3182 -5.4902 13 1 4.3959 2.7228 -5.7083 14 1 2.1654 2.7277 -6.6597 15 1 2.4631 2.9782 -4.2662 16 6 1.9990 -0.6353 -1.2259 17 1 -0.3634 -1.0266 -0.0468 18 1 -0.3634 0.4728 0.9124 19 1 -0.3633 0.5538 -0.8657 20 1 1.4237 2.0205 -0.6728 21 1 2.0013 1.7986 1.0091 22 1 4.1142 0.8824 0.2780 23 1 3.8161 2.1344 -0.9722 24 1 5.4068 -0.3054 -1.7540 25 1 4.5542 -1.2984 -0.5477 26 1 4.3551 -1.6404 -2.2831 27 1 3.2318 1.6641 -3.0333 28 1 2.6416 0.0874 -7.2202 29 1 1.2758 -0.5402 -2.0359 30 1 2.2116 -1.6881 -1.0401 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716600648.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:44 Heat of formation + Delta-G solvation = 19.451225 kcal Electronic energy + Delta-G solvation = -11809.938711 eV Core-core repulsion = 9833.544492 eV Total energy + Delta-G solvation = -1976.394219 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.84334 -34.63251 -32.07687 -29.97733 -28.81171 -26.35647 -24.36231 -22.80632 -20.84566 -18.67519 -17.56896 -15.62233 -15.09261 -14.21526 -13.82157 -13.65620 -13.10398 -12.65253 -12.40869 -12.26426 -11.82134 -11.28784 -11.10174 -10.97998 -10.91040 -10.65175 -10.30522 -10.23354 -9.85047 -9.51242 -8.97548 -8.07212 -7.25922 -5.77321 -3.12729 3.35743 3.38774 3.43898 4.45802 4.58277 5.13760 5.17160 5.32462 5.55229 5.55761 5.68747 5.78931 5.86799 6.07721 6.08843 6.10585 6.24031 6.41939 6.43262 6.55804 6.70145 6.87334 7.06598 7.24108 7.43461 8.01528 8.42660 9.20600 9.93499 10.13398 11.41036 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.044203 B = 0.013552 C = 0.013241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.282691 B = 2065.575619 C = 2114.205368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.525 5.525 3 C 0.036 3.964 4 C -0.125 4.125 5 C 0.195 3.805 6 C -0.143 4.143 7 N -0.743 5.743 8 C -0.238 4.238 9 H 0.092 0.908 10 C 0.004 3.996 11 N -0.934 5.934 12 Si 0.882 3.118 13 H -0.284 1.284 14 H -0.292 1.292 15 H -0.279 1.279 16 C 0.025 3.975 17 H 0.064 0.936 18 H 0.060 0.940 19 H 0.027 0.973 20 H 0.042 0.958 21 H 0.072 0.928 22 H 0.075 0.925 23 H 0.068 0.932 24 H 0.049 0.951 25 H 0.044 0.956 26 H 0.059 0.941 27 H 0.360 0.640 28 H 0.259 0.741 29 H 0.061 0.939 30 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.906 2.910 11.892 12.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.249 5.249 3 C -0.092 4.092 4 C -0.163 4.163 5 C 0.104 3.896 6 C -0.202 4.202 7 N -0.386 5.386 8 C -0.368 4.368 9 H 0.110 0.890 10 C -0.191 4.191 11 N -0.582 5.582 12 Si 0.713 3.287 13 H -0.211 1.211 14 H -0.218 1.218 15 H -0.205 1.205 16 C -0.105 4.105 17 H 0.083 0.917 18 H 0.079 0.921 19 H 0.046 0.954 20 H 0.060 0.940 21 H 0.091 0.909 22 H 0.094 0.906 23 H 0.087 0.913 24 H 0.068 0.932 25 H 0.063 0.937 26 H 0.078 0.922 27 H 0.194 0.806 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.788 2.428 12.183 12.447 hybrid contribution -0.362 1.733 -1.125 2.097 sum -1.150 4.161 11.058 11.871 Atomic orbital electron populations 1.22463 0.88866 1.01619 1.00201 1.64758 1.07423 1.14553 1.38157 1.23203 0.95618 0.90448 0.99894 1.22792 0.96045 0.99074 0.98415 1.20328 0.92707 0.91666 0.84915 1.22127 0.98224 0.99879 1.00014 1.42950 1.88764 1.04822 1.02086 1.19012 1.41513 0.91995 0.84306 0.89031 1.24652 1.02087 0.96942 0.95461 1.69693 1.56724 1.33639 0.98148 0.86581 0.77732 0.87381 0.76999 1.21080 1.21840 1.20527 1.23567 0.98242 0.98575 0.90108 0.91717 0.92115 0.95407 0.93962 0.90945 0.90589 0.91297 0.93201 0.93719 0.92152 0.80635 0.93106 0.92033 0.91277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.40 60.06 0.56 0.82 16 2 N -0.52 -8.77 5.55 -238.55 -1.32 -10.10 16 3 C 0.04 0.57 6.57 -1.76 -0.01 0.56 16 4 C -0.12 -2.04 6.29 -24.73 -0.16 -2.19 16 5 C 0.20 3.82 1.07 -130.46 -0.14 3.68 16 6 C -0.14 -2.65 8.18 37.16 0.30 -2.35 16 7 N -0.74 -17.50 4.92 -45.98 -0.23 -17.72 16 8 C -0.24 -6.61 9.06 -15.06 -0.14 -6.75 16 9 H 0.09 2.72 7.49 -52.49 -0.39 2.33 16 10 C 0.00 0.12 5.50 -17.43 -0.10 0.03 16 11 N -0.93 -29.26 13.97 55.49 0.78 -28.49 16 12 Si 0.88 22.16 27.74 -169.99 -4.71 17.45 16 13 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 14 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 15 H -0.28 -6.63 6.52 56.52 0.37 -6.26 16 16 C 0.02 0.47 5.87 -2.75 -0.02 0.46 16 17 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 18 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 19 H 0.03 0.43 8.00 -51.93 -0.42 0.02 16 20 H 0.04 0.70 7.96 -51.93 -0.41 0.29 16 21 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 22 H 0.08 1.11 7.86 -51.93 -0.41 0.70 16 23 H 0.07 1.10 7.73 -51.92 -0.40 0.70 16 24 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 25 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.06 1.23 7.29 -51.93 -0.38 0.85 16 27 H 0.36 8.42 5.31 -40.82 -0.22 8.20 16 28 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 29 H 0.06 1.35 7.09 -51.93 -0.37 0.98 16 30 H 0.07 1.29 7.68 -51.93 -0.40 0.89 16 LS Contribution 240.29 15.07 3.62 3.62 Total: -1.00 -30.25 240.29 -6.23 -36.49 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -4.68 Total: 4.49 kcal Atomic # 6 Polarization: -6.05 SS G_CDS: 0.31 Total: -5.74 kcal Atomic # 7 Polarization: -55.53 SS G_CDS: -0.78 Total: -56.31 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.71 Total: 17.45 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -30.25 -6.23 -36.49 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716600648.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.937 kcal (2) G-P(sol) polarization free energy of solvation -30.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds