Wall clock time and date at job start Mon Mar 30 2020 02:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.48531 * 111.00046 * 2 1 4 4 C 1.55195 * 103.23627 * 200.25519 * 3 2 1 5 5 C 1.54593 * 102.80550 * 37.43970 * 4 3 2 6 6 C 1.52996 * 110.30817 * 219.05049 * 5 4 3 7 7 N 1.46499 * 110.31060 * 96.97726 * 5 4 3 8 8 C 1.36939 * 119.99933 * 181.66698 * 7 5 4 9 9 H 1.08001 * 119.99700 * 359.72658 * 8 7 5 10 10 C 1.38810 * 120.00095 * 179.71972 * 8 7 5 11 11 N 1.31612 * 120.00054 * 179.97438 * 10 8 7 12 12 Si 1.86800 * 119.99751 * 0.02562 * 10 8 7 13 13 H 1.48500 * 109.47517 * 89.99708 * 12 10 8 14 14 H 1.48502 * 109.46736 * 209.99481 * 12 10 8 15 15 H 1.48496 * 109.47375 * 329.99177 * 12 10 8 16 16 C 1.47904 * 111.00071 * 242.60471 * 2 1 3 17 17 H 1.08997 * 109.47359 * 177.39195 * 1 2 3 18 18 H 1.09001 * 109.47427 * 297.39409 * 1 2 3 19 19 H 1.09006 * 109.47025 * 57.39378 * 1 2 3 20 20 H 1.08992 * 110.67084 * 318.71482 * 3 2 1 21 21 H 1.08999 * 110.66299 * 81.67993 * 3 2 1 22 22 H 1.09000 * 110.76603 * 279.12726 * 4 3 2 23 23 H 1.09008 * 110.79738 * 155.76536 * 4 3 2 24 24 H 1.09002 * 109.47210 * 298.60576 * 6 5 4 25 25 H 1.08995 * 109.47684 * 58.60732 * 6 5 4 26 26 H 1.09003 * 109.47027 * 178.60734 * 6 5 4 27 27 H 0.97001 * 119.99790 * 1.38671 * 7 5 4 28 28 H 0.96998 * 120.00381 * 180.02562 * 11 10 8 29 29 H 1.08998 * 109.91626 * 26.49382 * 16 2 1 30 30 H 1.08993 * 110.08617 * 265.29205 * 16 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 2.0012 1.3867 0.0000 4 6 3.4517 1.2105 -0.5230 5 6 3.2983 0.1054 -1.5931 6 6 4.4892 -0.8536 -1.5407 7 7 3.1845 0.7012 -2.9267 8 6 3.0056 -0.1010 -4.0220 9 1 2.9528 -1.1732 -3.9032 10 6 2.8920 0.4638 -5.2849 11 7 2.7206 -0.3072 -6.3376 12 14 2.9838 2.3182 -5.4902 13 1 4.3959 2.7228 -5.7083 14 1 2.1654 2.7277 -6.6597 15 1 2.4631 2.9782 -4.2662 16 6 1.9990 -0.6353 -1.2259 17 1 -0.3634 -1.0266 -0.0468 18 1 -0.3634 0.4728 0.9124 19 1 -0.3633 0.5538 -0.8657 20 1 1.4237 2.0205 -0.6728 21 1 2.0013 1.7986 1.0091 22 1 4.1142 0.8824 0.2780 23 1 3.8161 2.1344 -0.9722 24 1 5.4068 -0.3054 -1.7540 25 1 4.5542 -1.2984 -0.5477 26 1 4.3551 -1.6404 -2.2831 27 1 3.2318 1.6641 -3.0333 28 1 2.6416 0.0874 -7.2202 29 1 1.2758 -0.5402 -2.0359 30 1 2.2116 -1.6881 -1.0401 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716600648.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:43 Heat of formation + Delta-G solvation = -3.169218 kcal Electronic energy + Delta-G solvation = -11810.919607 eV Core-core repulsion = 9833.544492 eV Total energy + Delta-G solvation = -1977.375115 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.30296 -36.34117 -34.00655 -31.70398 -30.34648 -27.75692 -26.07256 -24.53698 -22.19751 -20.30795 -19.64602 -17.19808 -16.49654 -16.15149 -15.35696 -15.09790 -14.83028 -14.32461 -13.93373 -13.81874 -13.46511 -12.95801 -12.77230 -12.43342 -12.33157 -12.19572 -11.94626 -11.81925 -11.74314 -11.34204 -11.01010 -9.56874 -9.19851 -8.01143 -5.34248 1.35078 1.38600 1.45310 2.47791 3.11482 3.28664 3.65037 3.77673 3.87140 4.21908 4.42914 4.49359 4.58527 4.64601 4.80764 4.87132 4.92155 4.96136 5.07304 5.12369 5.20847 5.35572 5.53046 5.73204 5.95101 6.10338 6.24503 7.09131 7.85755 8.04109 9.20575 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.044203 B = 0.013552 C = 0.013241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.282691 B = 2065.575619 C = 2114.205368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.522 5.522 3 C 0.036 3.964 4 C -0.117 4.117 5 C 0.179 3.821 6 C -0.136 4.136 7 N -0.744 5.744 8 C -0.216 4.216 9 H 0.058 0.942 10 C -0.067 4.067 11 N -0.986 5.986 12 Si 0.952 3.048 13 H -0.278 1.278 14 H -0.300 1.300 15 H -0.255 1.255 16 C 0.032 3.968 17 H 0.068 0.932 18 H 0.089 0.911 19 H 0.013 0.987 20 H 0.031 0.969 21 H 0.105 0.895 22 H 0.101 0.899 23 H 0.075 0.925 24 H 0.052 0.948 25 H 0.074 0.926 26 H 0.029 0.971 27 H 0.363 0.637 28 H 0.256 0.744 29 H 0.024 0.976 30 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.601 4.625 14.292 15.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.246 5.246 3 C -0.091 4.091 4 C -0.155 4.155 5 C 0.089 3.911 6 C -0.196 4.196 7 N -0.388 5.388 8 C -0.347 4.347 9 H 0.076 0.924 10 C -0.258 4.258 11 N -0.637 5.637 12 Si 0.780 3.220 13 H -0.204 1.204 14 H -0.227 1.227 15 H -0.180 1.180 16 C -0.098 4.098 17 H 0.086 0.914 18 H 0.108 0.892 19 H 0.032 0.968 20 H 0.049 0.951 21 H 0.123 0.877 22 H 0.119 0.881 23 H 0.094 0.906 24 H 0.071 0.929 25 H 0.093 0.907 26 H 0.049 0.951 27 H 0.197 0.803 28 H 0.065 0.935 29 H 0.042 0.958 30 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.479 4.151 14.655 15.239 hybrid contribution -0.476 1.096 -1.775 2.139 sum -0.955 5.247 12.880 13.941 Atomic orbital electron populations 1.22540 0.87621 1.02091 1.00980 1.64810 1.08618 1.15287 1.35912 1.23318 0.94777 0.89540 1.01502 1.22798 0.97125 0.97913 0.97681 1.20703 0.93051 0.93331 0.84013 1.22052 0.97821 0.98869 1.00816 1.42974 1.88581 1.04631 1.02639 1.18917 1.39017 0.91047 0.85689 0.92397 1.25449 1.03126 1.02027 0.95191 1.69878 1.59328 1.35878 0.98627 0.85447 0.77776 0.81387 0.77371 1.20429 1.22662 1.17985 1.23368 0.97239 0.98967 0.90229 0.91362 0.89239 0.96823 0.95090 0.87655 0.88103 0.90602 0.92874 0.90749 0.95130 0.80275 0.93539 0.95758 0.91375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 9.40 127.69 1.20 1.65 16 2 N -0.52 -16.11 5.55 -908.64 -5.05 -21.16 16 3 C 0.04 1.00 6.57 86.74 0.57 1.57 16 4 C -0.12 -3.38 6.29 31.89 0.20 -3.18 16 5 C 0.18 6.72 1.07 4.48 0.00 6.73 16 6 C -0.14 -4.86 8.18 71.98 0.59 -4.28 16 7 N -0.74 -34.45 4.92 -299.38 -1.47 -35.92 16 8 C -0.22 -12.19 9.06 84.03 0.76 -11.43 16 9 H 0.06 3.61 7.49 -2.91 -0.02 3.59 16 10 C -0.07 -3.97 5.50 84.86 0.47 -3.50 16 11 N -0.99 -63.72 13.97 21.65 0.30 -63.42 16 12 Si 0.95 45.86 27.74 68.60 1.90 47.77 16 13 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 14 H -0.30 -14.73 7.11 99.48 0.71 -14.03 16 15 H -0.26 -11.12 6.52 99.48 0.65 -10.47 16 16 C 0.03 1.21 5.87 86.45 0.51 1.71 16 17 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 18 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 19 H 0.01 0.40 8.00 -2.38 -0.02 0.38 16 20 H 0.03 0.93 7.96 -2.39 -0.02 0.91 16 21 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 22 H 0.10 2.46 7.86 -2.39 -0.02 2.44 16 23 H 0.08 2.12 7.73 -2.38 -0.02 2.10 16 24 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 25 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 26 H 0.03 1.24 7.29 -2.39 -0.02 1.22 16 27 H 0.36 16.23 5.31 -92.71 -0.49 15.74 16 28 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 29 H 0.02 1.08 7.09 -2.39 -0.02 1.06 16 30 H 0.07 2.53 7.68 -2.39 -0.02 2.51 16 Total: -1.00 -65.92 240.29 0.54 -65.38 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: 0.55 Total: 18.07 kcal Atomic # 6 Polarization: -15.02 SS G_CDS: 4.30 Total: -10.73 kcal Atomic # 7 Polarization: -114.28 SS G_CDS: -6.22 Total: -120.50 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 1.90 Total: 47.77 kcal Total: -65.92 0.54 -65.38 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716600648.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.212 kcal (2) G-P(sol) polarization free energy of solvation -65.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds