Wall clock time and date at job start Mon Mar 30 2020 02:29:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 110.45998 * 2 1 4 4 C 1.54384 * 110.40765 * 122.41269 * 2 1 3 5 5 H 1.08998 * 110.32472 * 23.73107 * 4 2 1 6 6 N 1.46506 * 110.40870 * 261.56786 * 4 2 1 7 7 C 1.36930 * 119.99768 * 157.85735 * 6 4 2 8 8 H 1.08003 * 120.00283 * 0.02562 * 7 6 4 9 9 C 1.38814 * 120.00169 * 180.02562 * 7 6 4 10 10 N 1.31622 * 119.99537 * 0.02562 * 9 7 6 11 11 Si 1.86793 * 120.00373 * 180.02562 * 9 7 6 12 12 H 1.48508 * 109.47356 * 89.99937 * 11 9 7 13 13 H 1.48500 * 109.47366 * 210.00052 * 11 9 7 14 14 H 1.48504 * 109.47151 * 329.99882 * 11 9 7 15 15 C 1.54255 * 105.06060 * 142.63005 * 4 2 1 16 16 C 1.54385 * 105.06035 * 359.97438 * 15 4 2 17 17 N 1.48554 * 110.40952 * 237.58309 * 2 1 3 18 18 C 1.46901 * 111.00201 * 82.18591 * 17 2 1 19 19 H 1.08990 * 109.47614 * 180.96141 * 1 2 3 20 20 H 1.09000 * 109.46862 * 300.96567 * 1 2 3 21 21 H 1.09002 * 109.47052 * 60.95869 * 1 2 3 22 22 H 0.96995 * 119.99850 * 337.86118 * 6 4 2 23 23 H 0.96997 * 119.99692 * 180.02562 * 10 9 7 24 24 H 1.08994 * 110.32708 * 241.10448 * 15 4 2 25 25 H 1.09003 * 110.32750 * 118.89036 * 15 4 2 26 26 H 1.09004 * 110.41214 * 217.36871 * 16 15 4 27 27 H 1.08998 * 110.41383 * 94.92575 * 16 15 4 28 28 H 1.09002 * 109.47401 * 175.29016 * 18 17 2 29 29 H 1.09001 * 109.46874 * 55.29029 * 18 17 2 30 30 H 1.09004 * 109.46970 * 295.29162 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9110 1.0212 0.0000 4 6 2.0684 -0.7756 1.2215 5 1 1.3234 -1.4879 1.5760 6 7 2.4352 0.1520 2.2945 7 6 2.4986 -0.2893 3.5892 8 1 2.2785 -1.3214 3.8193 9 6 2.8457 0.5896 4.6060 10 7 3.1133 1.8475 4.3256 11 14 2.9328 -0.0126 6.3720 12 1 4.3056 -0.4991 6.6620 13 1 2.5985 1.1036 7.2927 14 1 1.9636 -1.1210 6.5655 15 6 3.3176 -1.5189 0.7056 16 6 3.4287 -1.1305 -0.7845 17 7 2.0481 -0.7464 -1.1753 18 6 2.0569 0.1012 -2.3751 19 1 -0.3634 -1.0274 0.0172 20 1 -0.3633 0.5288 0.8812 21 1 -0.3633 0.4989 -0.8985 22 1 2.6331 1.0788 2.0878 23 1 3.3562 2.4616 5.0360 24 1 3.1860 -2.5961 0.8067 25 1 4.2041 -1.1923 1.2493 26 1 3.7686 -1.9814 -1.3749 27 1 4.1068 -0.2861 -0.9077 28 1 2.5177 -0.4419 -3.2003 29 1 2.6263 1.0088 -2.1746 30 1 1.0333 0.3656 -2.6407 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719596421.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:44 Heat of formation + Delta-G solvation = 13.192250 kcal Electronic energy + Delta-G solvation = -11584.104159 eV Core-core repulsion = 9607.438530 eV Total energy + Delta-G solvation = -1976.665629 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.71804 -34.24205 -31.63196 -30.85718 -29.14480 -25.05793 -24.62307 -22.93216 -20.20167 -19.52183 -17.00586 -15.56246 -14.91770 -14.40291 -14.19288 -13.44062 -13.18083 -12.77507 -12.45985 -12.11745 -11.42625 -11.19386 -11.01881 -10.95821 -10.77066 -10.74278 -10.40438 -10.12628 -9.78968 -9.62430 -8.87422 -8.17590 -6.94329 -5.76027 -3.04766 3.44278 3.49536 3.51200 4.34581 4.63255 5.19635 5.25099 5.52875 5.58779 5.65722 5.75374 5.80491 5.90480 5.96239 5.99749 6.14656 6.26779 6.34069 6.48987 6.56034 6.70786 6.83287 7.03532 7.28774 7.41315 7.73183 8.42935 9.53469 10.11408 10.45916 11.46742 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.066642 B = 0.010259 C = 0.009861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 420.052513 B = 2728.577584 C = 2838.795839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.051 3.949 3 H 0.052 0.948 4 C 0.180 3.820 5 H 0.058 0.942 6 N -0.721 5.721 7 C -0.237 4.237 8 H 0.071 0.929 9 C -0.015 4.015 10 N -0.934 5.934 11 Si 0.907 3.093 12 H -0.290 1.290 13 H -0.292 1.292 14 H -0.282 1.282 15 C -0.148 4.148 16 C 0.035 3.965 17 N -0.515 5.515 18 C 0.015 3.985 19 H 0.058 0.942 20 H 0.063 0.937 21 H 0.043 0.957 22 H 0.382 0.618 23 H 0.255 0.745 24 H 0.057 0.943 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.038 0.962 28 H 0.062 0.938 29 H 0.025 0.975 30 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.912 -3.835 -9.925 10.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.058 4.058 3 H 0.070 0.930 4 C 0.069 3.931 5 H 0.076 0.924 6 N -0.362 5.362 7 C -0.368 4.368 8 H 0.089 0.911 9 C -0.210 4.210 10 N -0.583 5.583 11 Si 0.738 3.262 12 H -0.218 1.218 13 H -0.218 1.218 14 H -0.207 1.207 15 C -0.189 4.189 16 C -0.093 4.093 17 N -0.239 5.239 18 C -0.134 4.134 19 H 0.077 0.923 20 H 0.082 0.918 21 H 0.062 0.938 22 H 0.216 0.784 23 H 0.065 0.935 24 H 0.076 0.924 25 H 0.094 0.906 26 H 0.088 0.912 27 H 0.056 0.944 28 H 0.081 0.919 29 H 0.043 0.957 30 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.269 -4.374 -9.885 11.045 hybrid contribution 0.768 0.808 0.996 1.495 sum -1.501 -3.566 -8.890 9.695 Atomic orbital electron populations 1.21619 0.94150 1.01872 1.00907 1.22944 0.95876 0.96227 0.90735 0.92989 1.20956 0.93407 0.91556 0.87161 0.92415 1.42490 1.82131 1.09078 1.02514 1.19252 1.38905 0.94887 0.83741 0.91093 1.24747 1.02580 0.95678 0.98036 1.69667 1.53623 1.03224 1.31761 0.86186 0.77684 0.77400 0.84914 1.21768 1.21812 1.20722 1.23148 1.01941 1.00250 0.93605 1.23059 0.89509 0.99354 0.97372 1.65297 1.18405 1.37037 1.03162 1.22474 1.01493 0.95588 0.93835 0.92312 0.91845 0.93753 0.78391 0.93550 0.92447 0.90605 0.91214 0.94412 0.91917 0.95672 0.91649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.08 9.35 37.16 0.35 -1.73 16 2 C 0.05 0.92 2.60 -66.07 -0.17 0.75 16 3 H 0.05 1.01 7.50 -51.93 -0.39 0.62 16 4 C 0.18 3.77 3.25 -66.54 -0.22 3.55 16 5 H 0.06 1.25 7.81 -51.93 -0.41 0.84 16 6 N -0.72 -18.37 5.09 -52.08 -0.27 -18.63 16 7 C -0.24 -6.61 9.97 -15.06 -0.15 -6.76 16 8 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 9 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 10 N -0.93 -28.36 13.06 55.49 0.72 -27.63 16 11 Si 0.91 22.52 29.55 -169.99 -5.02 17.50 16 12 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 13 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 14 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 15 C -0.15 -2.81 6.78 -25.35 -0.17 -2.98 16 16 C 0.04 0.57 6.49 -2.19 -0.01 0.56 16 17 N -0.51 -8.36 5.34 -230.36 -1.23 -9.59 16 18 C 0.02 0.21 9.42 60.07 0.57 0.77 16 19 H 0.06 0.93 8.12 -51.93 -0.42 0.50 16 20 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 21 H 0.04 0.63 7.54 -51.93 -0.39 0.24 16 22 H 0.38 10.36 7.55 -40.82 -0.31 10.05 16 23 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 24 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 25 H 0.08 1.58 7.95 -51.93 -0.41 1.17 16 26 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 27 H 0.04 0.62 7.97 -51.93 -0.41 0.21 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.02 0.34 7.97 -51.93 -0.41 -0.07 16 30 H 0.06 0.81 7.54 -51.93 -0.39 0.42 16 LS Contribution 246.36 15.07 3.71 3.71 Total: -1.00 -29.50 246.36 -6.77 -36.27 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -4.78 Total: 4.73 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: 0.09 Total: -6.36 kcal Atomic # 7 Polarization: -55.09 SS G_CDS: -0.77 Total: -55.86 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -29.50 -6.77 -36.27 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719596421.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.463 kcal (2) G-P(sol) polarization free energy of solvation -29.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds