Wall clock time and date at job start Mon Mar 30 2020 02:29:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 110.45998 * 2 1 4 4 C 1.54384 * 110.40765 * 122.41269 * 2 1 3 5 5 H 1.08998 * 110.32472 * 23.73107 * 4 2 1 6 6 N 1.46506 * 110.40870 * 261.56786 * 4 2 1 7 7 C 1.36930 * 119.99768 * 157.85735 * 6 4 2 8 8 H 1.08003 * 120.00283 * 0.02562 * 7 6 4 9 9 C 1.38814 * 120.00169 * 180.02562 * 7 6 4 10 10 N 1.31622 * 119.99537 * 0.02562 * 9 7 6 11 11 Si 1.86793 * 120.00373 * 180.02562 * 9 7 6 12 12 H 1.48508 * 109.47356 * 89.99937 * 11 9 7 13 13 H 1.48500 * 109.47366 * 210.00052 * 11 9 7 14 14 H 1.48504 * 109.47151 * 329.99882 * 11 9 7 15 15 C 1.54255 * 105.06060 * 142.63005 * 4 2 1 16 16 C 1.54385 * 105.06035 * 359.97438 * 15 4 2 17 17 N 1.48554 * 110.40952 * 237.58309 * 2 1 3 18 18 C 1.46901 * 111.00201 * 82.18591 * 17 2 1 19 19 H 1.08990 * 109.47614 * 180.96141 * 1 2 3 20 20 H 1.09000 * 109.46862 * 300.96567 * 1 2 3 21 21 H 1.09002 * 109.47052 * 60.95869 * 1 2 3 22 22 H 0.96995 * 119.99850 * 337.86118 * 6 4 2 23 23 H 0.96997 * 119.99692 * 180.02562 * 10 9 7 24 24 H 1.08994 * 110.32708 * 241.10448 * 15 4 2 25 25 H 1.09003 * 110.32750 * 118.89036 * 15 4 2 26 26 H 1.09004 * 110.41214 * 217.36871 * 16 15 4 27 27 H 1.08998 * 110.41383 * 94.92575 * 16 15 4 28 28 H 1.09002 * 109.47401 * 175.29016 * 18 17 2 29 29 H 1.09001 * 109.46874 * 55.29029 * 18 17 2 30 30 H 1.09004 * 109.46970 * 295.29162 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9110 1.0212 0.0000 4 6 2.0684 -0.7756 1.2215 5 1 1.3234 -1.4879 1.5760 6 7 2.4352 0.1520 2.2945 7 6 2.4986 -0.2893 3.5892 8 1 2.2785 -1.3214 3.8193 9 6 2.8457 0.5896 4.6060 10 7 3.1133 1.8475 4.3256 11 14 2.9328 -0.0126 6.3720 12 1 4.3056 -0.4991 6.6620 13 1 2.5985 1.1036 7.2927 14 1 1.9636 -1.1210 6.5655 15 6 3.3176 -1.5189 0.7056 16 6 3.4287 -1.1305 -0.7845 17 7 2.0481 -0.7464 -1.1753 18 6 2.0569 0.1012 -2.3751 19 1 -0.3634 -1.0274 0.0172 20 1 -0.3633 0.5288 0.8812 21 1 -0.3633 0.4989 -0.8985 22 1 2.6331 1.0788 2.0878 23 1 3.3562 2.4616 5.0360 24 1 3.1860 -2.5961 0.8067 25 1 4.2041 -1.1923 1.2493 26 1 3.7686 -1.9814 -1.3749 27 1 4.1068 -0.2861 -0.9077 28 1 2.5177 -0.4419 -3.2003 29 1 2.6263 1.0088 -2.1746 30 1 1.0333 0.3656 -2.6407 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719596421.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:43 Heat of formation + Delta-G solvation = -7.776665 kcal Electronic energy + Delta-G solvation = -11585.013440 eV Core-core repulsion = 9607.438530 eV Total energy + Delta-G solvation = -1977.574909 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.16621 -36.11300 -33.47089 -32.24521 -30.88400 -26.79117 -25.89765 -24.77104 -21.63418 -21.12261 -19.07516 -17.21781 -16.28515 -16.11981 -15.79620 -15.15154 -14.70061 -14.32088 -13.97478 -13.45127 -13.08703 -12.93436 -12.69001 -12.49226 -12.28164 -12.16283 -12.12147 -11.98767 -11.57753 -11.36384 -10.92492 -9.48208 -9.02029 -7.95288 -5.24272 1.47055 1.48582 1.57199 2.54844 3.06328 3.37346 3.74279 3.96036 4.06205 4.27621 4.30549 4.49265 4.60423 4.61215 4.65503 4.88713 4.93317 4.97171 5.01719 5.13507 5.27732 5.33753 5.45781 5.50839 5.89317 6.13210 6.27747 7.32183 8.06928 8.30886 9.28291 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.066642 B = 0.010259 C = 0.009861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 420.052513 B = 2728.577584 C = 2838.795839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.057 3.943 3 H 0.035 0.965 4 C 0.170 3.830 5 H 0.050 0.950 6 N -0.732 5.732 7 C -0.238 4.238 8 H 0.075 0.925 9 C -0.076 4.076 10 N -0.971 5.971 11 Si 0.973 3.027 12 H -0.288 1.288 13 H -0.295 1.295 14 H -0.269 1.269 15 C -0.144 4.144 16 C 0.041 3.959 17 N -0.513 5.513 18 C 0.013 3.987 19 H 0.064 0.936 20 H 0.046 0.954 21 H 0.067 0.933 22 H 0.370 0.630 23 H 0.251 0.749 24 H 0.070 0.930 25 H 0.050 0.950 26 H 0.097 0.903 27 H 0.034 0.966 28 H 0.085 0.915 29 H 0.020 0.980 30 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.271 -4.974 -10.983 12.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.052 4.052 3 H 0.053 0.947 4 C 0.061 3.939 5 H 0.068 0.932 6 N -0.372 5.372 7 C -0.370 4.370 8 H 0.093 0.907 9 C -0.268 4.268 10 N -0.622 5.622 11 Si 0.802 3.198 12 H -0.215 1.215 13 H -0.222 1.222 14 H -0.194 1.194 15 C -0.185 4.185 16 C -0.087 4.087 17 N -0.237 5.237 18 C -0.135 4.135 19 H 0.083 0.917 20 H 0.065 0.935 21 H 0.086 0.914 22 H 0.202 0.798 23 H 0.059 0.941 24 H 0.088 0.912 25 H 0.069 0.931 26 H 0.115 0.885 27 H 0.053 0.947 28 H 0.104 0.896 29 H 0.039 0.961 30 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.640 -5.557 -10.980 12.587 hybrid contribution 0.870 1.124 1.238 1.885 sum -1.770 -4.434 -9.742 10.849 Atomic orbital electron populations 1.21555 0.92693 1.02329 1.01330 1.22806 0.97009 0.94960 0.90440 0.94713 1.21186 0.94211 0.91253 0.87237 0.93168 1.42635 1.82387 1.09190 1.02986 1.19608 1.37426 0.94988 0.84957 0.90681 1.25560 1.03263 0.95926 1.02083 1.69824 1.55340 1.04376 1.32630 0.85140 0.77782 0.76948 0.79909 1.21479 1.22209 1.19368 1.22990 0.99576 1.00620 0.95325 1.23047 0.89717 1.00250 0.95650 1.65341 1.18072 1.37207 1.03123 1.22587 1.02631 0.95310 0.93008 0.91705 0.93461 0.91387 0.79789 0.94065 0.91168 0.93097 0.88486 0.94729 0.89649 0.96092 0.90332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.76 9.35 71.98 0.67 -3.09 16 2 C 0.06 2.01 2.60 45.07 0.12 2.12 16 3 H 0.03 1.35 7.50 -2.39 -0.02 1.33 16 4 C 0.17 7.08 3.25 45.89 0.15 7.23 16 5 H 0.05 2.15 7.81 -2.39 -0.02 2.13 16 6 N -0.73 -37.88 5.09 -318.70 -1.62 -39.50 16 7 C -0.24 -13.40 9.97 84.04 0.84 -12.57 16 8 H 0.08 4.08 7.83 -2.91 -0.02 4.05 16 9 C -0.08 -4.43 5.50 84.86 0.47 -3.96 16 10 N -0.97 -60.06 13.06 21.65 0.28 -59.78 16 11 Si 0.97 46.57 29.55 68.60 2.03 48.60 16 12 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 13 H -0.30 -14.21 7.11 99.48 0.71 -13.51 16 14 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 15 C -0.14 -5.33 6.78 31.49 0.21 -5.12 16 16 C 0.04 1.25 6.49 86.46 0.56 1.82 16 17 N -0.51 -15.38 5.34 -882.71 -4.71 -20.09 16 18 C 0.01 0.31 9.42 127.69 1.20 1.52 16 19 H 0.06 1.92 8.12 -2.39 -0.02 1.90 16 20 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 21 H 0.07 1.77 7.54 -2.39 -0.02 1.75 16 22 H 0.37 20.65 7.55 -92.71 -0.70 19.95 16 23 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 24 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 25 H 0.05 2.12 7.95 -2.39 -0.02 2.10 16 26 H 0.10 2.46 8.14 -2.38 -0.02 2.44 16 27 H 0.03 1.08 7.97 -2.39 -0.02 1.06 16 28 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.02 0.52 7.97 -2.39 -0.02 0.50 16 30 H 0.08 1.68 7.54 -2.38 -0.02 1.66 16 Total: -1.00 -62.48 246.36 0.60 -61.88 By element: Atomic # 1 Polarization: 20.54 SS G_CDS: 0.40 Total: 20.94 kcal Atomic # 6 Polarization: -16.27 SS G_CDS: 4.22 Total: -12.05 kcal Atomic # 7 Polarization: -113.32 SS G_CDS: -6.05 Total: -119.38 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.60 kcal Total: -62.48 0.60 -61.88 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719596421.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.108 kcal (2) G-P(sol) polarization free energy of solvation -62.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds