Wall clock time and date at job start Mon Mar 30 2020 01:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 H 1.09002 * 109.47069 * 304.99600 * 3 2 1 5 5 O 1.42899 * 109.47405 * 64.99795 * 3 2 1 6 6 C 1.34919 * 117.00034 * 269.99701 * 5 3 2 7 7 H 1.07995 * 120.00210 * 0.02562 * 6 5 3 8 8 C 1.38637 * 119.99909 * 179.97438 * 6 5 3 9 9 N 1.31583 * 120.00108 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 120.00115 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.46958 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.46995 * 120.00235 * 10 8 6 13 13 H 1.48496 * 109.47241 * 240.00267 * 10 8 6 14 14 C 1.53006 * 109.46846 * 185.00166 * 3 2 1 15 15 C 1.53780 * 113.60898 * 279.13276 * 14 3 2 16 16 C 1.53953 * 87.01917 * 220.04840 * 15 14 3 17 17 C 1.53776 * 113.61311 * 181.52724 * 14 3 2 18 18 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 19 19 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 20 20 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 21 21 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 22 22 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 23 23 H 0.97002 * 120.00263 * 179.97438 * 9 8 6 24 24 H 1.09000 * 112.85012 * 50.33226 * 14 3 2 25 25 H 1.09000 * 113.61939 * 334.56909 * 15 14 3 26 26 H 1.09000 * 113.61492 * 105.47760 * 15 14 3 27 27 H 1.09004 * 113.54210 * 270.81920 * 16 15 14 28 28 H 1.08998 * 113.74670 * 139.94670 * 16 15 14 29 29 H 1.09003 * 113.61674 * 254.52717 * 17 14 3 30 30 H 1.09006 * 113.61609 * 25.43431 * 17 14 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 8 1.6619 2.0815 1.2210 6 6 0.4727 2.7185 1.2363 7 1 -0.1458 2.7289 0.3510 8 6 0.0442 3.3590 2.3887 9 7 0.7975 3.3461 3.4675 10 14 -1.6026 4.2405 2.4101 11 1 -2.2522 4.1081 1.0814 12 1 -2.4743 3.6358 3.4492 13 1 -1.3908 5.6779 2.7170 14 6 3.5648 1.4443 -0.1258 15 6 4.2927 1.1810 1.2030 16 6 5.3055 2.2560 0.7686 17 6 4.1835 2.8518 -0.0981 18 1 -0.3633 0.5139 0.8900 19 1 -0.3634 0.5138 -0.8899 20 1 -0.3635 -1.0276 0.0005 21 1 1.8933 -0.5139 -0.8900 22 1 1.8933 -0.5138 0.8900 23 1 0.4979 3.7945 4.2738 24 1 3.9223 0.8263 -0.9494 25 1 3.7112 1.4589 2.0820 26 1 4.7204 0.1811 1.2760 27 1 6.1401 1.8595 0.1902 28 1 5.6256 2.9107 1.5792 29 1 4.5231 3.1988 -1.0740 30 1 3.5721 3.5874 0.4247 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719690416.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:20 Heat of formation + Delta-G solvation = -32.649730 kcal Electronic energy + Delta-G solvation = -11765.854855 eV Core-core repulsion = 9754.908617 eV Total energy + Delta-G solvation = -2010.946237 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.59188 -35.80665 -32.48182 -31.10040 -27.35635 -24.91106 -24.22669 -22.57762 -20.12335 -18.56431 -17.45912 -15.28130 -14.96280 -14.20734 -14.15953 -13.53508 -12.95407 -12.12111 -11.82675 -11.54475 -11.48580 -11.14996 -11.10253 -10.93928 -10.68105 -10.28734 -10.17742 -9.82543 -9.80164 -9.37139 -9.10895 -8.79173 -7.86956 -5.88499 -3.48342 3.33021 3.37375 3.40775 4.36297 5.24841 5.36885 5.43124 5.46011 5.55337 5.74412 5.92579 6.02523 6.06746 6.22244 6.35474 6.42227 6.49463 6.56713 6.62773 6.71613 6.85760 6.91069 7.04496 7.10225 7.27282 7.43809 7.56021 8.50975 9.56054 10.28369 11.32737 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.040184 B = 0.014385 C = 0.011802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.623889 B = 1945.991256 C = 2372.001508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.136 4.136 3 C 0.105 3.895 4 H 0.036 0.964 5 O -0.279 6.279 6 C -0.346 4.346 7 H 0.061 0.939 8 C 0.020 3.980 9 N -0.890 5.890 10 Si 0.916 3.084 11 H -0.275 1.275 12 H -0.284 1.284 13 H -0.284 1.284 14 C -0.111 4.111 15 C -0.124 4.124 16 C -0.145 4.145 17 C -0.129 4.129 18 H 0.081 0.919 19 H 0.040 0.960 20 H 0.034 0.966 21 H 0.044 0.956 22 H 0.060 0.940 23 H 0.255 0.745 24 H 0.079 0.921 25 H 0.104 0.896 26 H 0.048 0.952 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.050 0.950 30 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.659 -3.414 -6.179 7.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.174 4.174 3 C 0.045 3.955 4 H 0.054 0.946 5 O -0.194 6.194 6 C -0.426 4.426 7 H 0.079 0.921 8 C -0.177 4.177 9 N -0.534 5.534 10 Si 0.744 3.256 11 H -0.200 1.200 12 H -0.211 1.211 13 H -0.211 1.211 14 C -0.129 4.129 15 C -0.161 4.161 16 C -0.182 4.182 17 C -0.166 4.166 18 H 0.100 0.900 19 H 0.059 0.941 20 H 0.053 0.947 21 H 0.063 0.937 22 H 0.079 0.921 23 H 0.065 0.935 24 H 0.097 0.903 25 H 0.123 0.877 26 H 0.067 0.933 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.068 0.932 30 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 3.770 -3.358 -5.860 7.735 hybrid contribution -1.013 0.390 -0.255 1.115 sum 2.757 -2.968 -6.115 7.335 Atomic orbital electron populations 1.21808 0.96164 0.99704 1.03097 1.21985 0.96393 0.98786 1.00254 1.21589 0.92186 0.91718 0.89991 0.94611 1.85648 1.36639 1.68441 1.28635 1.20870 0.94653 1.29347 0.97724 0.92100 1.24867 0.98471 0.99122 0.95271 1.70014 1.36709 1.44910 1.01738 0.86022 0.82505 0.79236 0.77847 1.20036 1.21077 1.21083 1.22618 0.95047 0.97316 0.97911 1.22823 0.96985 0.96993 0.99292 1.22812 0.96466 0.99254 0.99700 1.22843 0.97535 0.97386 0.98830 0.89974 0.94115 0.94680 0.93729 0.92127 0.93504 0.90252 0.87737 0.93276 0.91633 0.92028 0.93159 0.88723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.95 9.17 37.16 0.34 -2.61 16 2 C -0.14 -2.66 5.62 -26.73 -0.15 -2.81 16 3 C 0.10 2.28 2.35 -26.73 -0.06 2.21 16 4 H 0.04 0.79 7.80 -51.93 -0.41 0.39 16 5 O -0.28 -7.56 7.47 -16.48 -0.12 -7.68 16 6 C -0.35 -9.79 7.58 30.88 0.23 -9.56 16 7 H 0.06 1.66 7.37 -52.49 -0.39 1.27 16 8 C 0.02 0.58 5.49 -17.51 -0.10 0.49 16 9 N -0.89 -27.45 13.67 55.48 0.76 -26.69 16 10 Si 0.92 22.06 29.55 -169.99 -5.02 17.04 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 13 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 14 C -0.11 -2.07 3.58 -89.81 -0.32 -2.40 16 15 C -0.12 -2.34 7.49 -25.83 -0.19 -2.54 16 16 C -0.14 -2.44 8.09 -25.83 -0.21 -2.65 16 17 C -0.13 -2.38 7.54 -25.92 -0.20 -2.57 16 18 H 0.08 1.88 6.29 -51.93 -0.33 1.55 16 19 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 20 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 21 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 22 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 23 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 24 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 25 H 0.10 2.41 7.03 -51.93 -0.36 2.04 16 26 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 27 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 28 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.09 2.07 7.72 -51.93 -0.40 1.67 16 LS Contribution 246.72 15.07 3.72 3.72 Total: -1.00 -30.25 246.72 -6.15 -36.40 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: -4.82 Total: -0.35 kcal Atomic # 6 Polarization: -21.78 SS G_CDS: -0.65 Total: -22.44 kcal Atomic # 7 Polarization: -27.45 SS G_CDS: 0.76 Total: -26.69 kcal Atomic # 8 Polarization: -7.56 SS G_CDS: -0.12 Total: -7.68 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -30.25 -6.15 -36.40 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719690416.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.752 kcal (2) G-P(sol) polarization free energy of solvation -30.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds