Wall clock time and date at job start Mon Mar 30 2020 01:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 H 1.09002 * 109.47069 * 304.99600 * 3 2 1 5 5 O 1.42899 * 109.47405 * 64.99795 * 3 2 1 6 6 C 1.34919 * 117.00034 * 269.99701 * 5 3 2 7 7 H 1.07995 * 120.00210 * 0.02562 * 6 5 3 8 8 C 1.38637 * 119.99909 * 179.97438 * 6 5 3 9 9 N 1.31583 * 120.00108 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 120.00115 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.46958 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.46995 * 120.00235 * 10 8 6 13 13 H 1.48496 * 109.47241 * 240.00267 * 10 8 6 14 14 C 1.53006 * 109.46846 * 185.00166 * 3 2 1 15 15 C 1.53780 * 113.60898 * 279.13276 * 14 3 2 16 16 C 1.53953 * 87.01917 * 220.04840 * 15 14 3 17 17 C 1.53776 * 113.61311 * 181.52724 * 14 3 2 18 18 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 19 19 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 20 20 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 21 21 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 22 22 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 23 23 H 0.97002 * 120.00263 * 179.97438 * 9 8 6 24 24 H 1.09000 * 112.85012 * 50.33226 * 14 3 2 25 25 H 1.09000 * 113.61939 * 334.56909 * 15 14 3 26 26 H 1.09000 * 113.61492 * 105.47760 * 15 14 3 27 27 H 1.09004 * 113.54210 * 270.81920 * 16 15 14 28 28 H 1.08998 * 113.74670 * 139.94670 * 16 15 14 29 29 H 1.09003 * 113.61674 * 254.52717 * 17 14 3 30 30 H 1.09006 * 113.61609 * 25.43431 * 17 14 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 8 1.6619 2.0815 1.2210 6 6 0.4727 2.7185 1.2363 7 1 -0.1458 2.7289 0.3510 8 6 0.0442 3.3590 2.3887 9 7 0.7975 3.3461 3.4675 10 14 -1.6026 4.2405 2.4101 11 1 -2.2522 4.1081 1.0814 12 1 -2.4743 3.6358 3.4492 13 1 -1.3908 5.6779 2.7170 14 6 3.5648 1.4443 -0.1258 15 6 4.2927 1.1810 1.2030 16 6 5.3055 2.2560 0.7686 17 6 4.1835 2.8518 -0.0981 18 1 -0.3633 0.5139 0.8900 19 1 -0.3634 0.5138 -0.8899 20 1 -0.3635 -1.0276 0.0005 21 1 1.8933 -0.5139 -0.8900 22 1 1.8933 -0.5138 0.8900 23 1 0.4979 3.7945 4.2738 24 1 3.9223 0.8263 -0.9494 25 1 3.7112 1.4589 2.0820 26 1 4.7204 0.1811 1.2760 27 1 6.1401 1.8595 0.1902 28 1 5.6256 2.9107 1.5792 29 1 4.5231 3.1988 -1.0740 30 1 3.5721 3.5874 0.4247 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719690416.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:20 Heat of formation + Delta-G solvation = -50.899148 kcal Electronic energy + Delta-G solvation = -11766.646209 eV Core-core repulsion = 9754.908617 eV Total energy + Delta-G solvation = -2011.737591 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.20053 -37.61684 -34.35355 -33.10347 -29.01099 -26.50298 -26.26286 -24.10800 -21.77268 -20.17509 -19.48596 -17.22419 -16.51098 -16.07153 -15.76084 -15.29899 -14.71456 -13.73696 -13.61724 -13.26158 -13.16055 -12.99708 -12.80664 -12.54904 -12.41182 -12.06261 -11.90382 -11.47416 -11.30854 -11.11346 -10.80821 -10.57474 -9.95785 -8.08039 -5.70924 1.39358 1.43165 1.53291 2.36546 3.24567 3.68879 3.86758 3.98387 4.06664 4.16418 4.41047 4.45583 4.46661 4.76471 4.88515 4.91088 5.02925 5.06890 5.13356 5.17841 5.21669 5.25858 5.32479 5.47481 5.53560 5.64060 5.90981 6.31656 7.36827 8.22861 9.17096 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.040184 B = 0.014385 C = 0.011802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.623889 B = 1945.991256 C = 2372.001508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.132 4.132 3 C 0.091 3.909 4 H 0.029 0.971 5 O -0.311 6.311 6 C -0.343 4.343 7 H 0.066 0.934 8 C -0.046 4.046 9 N -0.941 5.941 10 Si 0.988 3.012 11 H -0.259 1.259 12 H -0.281 1.281 13 H -0.281 1.281 14 C -0.106 4.106 15 C -0.129 4.129 16 C -0.129 4.129 17 C -0.133 4.133 18 H 0.040 0.960 19 H 0.048 0.952 20 H 0.062 0.938 21 H 0.083 0.917 22 H 0.048 0.952 23 H 0.254 0.746 24 H 0.120 0.880 25 H 0.051 0.949 26 H 0.073 0.927 27 H 0.106 0.894 28 H 0.053 0.947 29 H 0.079 0.921 30 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.957 -4.228 -8.142 9.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.169 4.169 3 C 0.032 3.968 4 H 0.047 0.953 5 O -0.227 6.227 6 C -0.423 4.423 7 H 0.083 0.917 8 C -0.238 4.238 9 N -0.587 5.587 10 Si 0.812 3.188 11 H -0.183 1.183 12 H -0.207 1.207 13 H -0.207 1.207 14 C -0.124 4.124 15 C -0.166 4.166 16 C -0.166 4.166 17 C -0.171 4.171 18 H 0.060 0.940 19 H 0.067 0.933 20 H 0.081 0.919 21 H 0.102 0.898 22 H 0.067 0.933 23 H 0.063 0.937 24 H 0.138 0.862 25 H 0.070 0.930 26 H 0.092 0.908 27 H 0.124 0.876 28 H 0.072 0.928 29 H 0.098 0.902 30 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.069 -4.184 -7.853 9.784 hybrid contribution -1.053 0.575 0.280 1.232 sum 3.017 -3.609 -7.573 8.915 Atomic orbital electron populations 1.21746 0.96356 1.01028 1.01388 1.21935 0.96269 0.97245 1.01481 1.21961 0.94505 0.92542 0.87745 0.95253 1.85626 1.36276 1.68964 1.31789 1.21217 0.94950 1.28347 0.97749 0.91654 1.25948 1.02569 1.00384 0.94909 1.70191 1.39153 1.46809 1.02564 0.84921 0.77652 0.77706 0.78500 1.18316 1.20657 1.20702 1.22746 0.92756 0.98004 0.98901 1.22688 0.97474 0.98999 0.97466 1.22806 0.96613 0.97870 0.99350 1.22753 0.97771 0.96444 1.00102 0.94039 0.93333 0.91875 0.89817 0.93307 0.93672 0.86232 0.93021 0.90802 0.87613 0.92837 0.90247 0.93451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.60 9.17 71.98 0.66 -4.94 16 2 C -0.13 -4.91 5.62 30.59 0.17 -4.74 16 3 C 0.09 3.92 2.35 30.60 0.07 3.99 16 4 H 0.03 1.29 7.80 -2.39 -0.02 1.27 16 5 O -0.31 -17.41 7.47 -81.88 -0.61 -18.02 16 6 C -0.34 -19.88 7.58 67.92 0.51 -19.36 16 7 H 0.07 3.60 7.37 -2.91 -0.02 3.58 16 8 C -0.05 -2.73 5.49 84.83 0.47 -2.26 16 9 N -0.94 -60.32 13.67 21.61 0.30 -60.03 16 10 Si 0.99 46.07 29.55 68.60 2.03 48.09 16 11 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 12 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 13 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 14 C -0.11 -3.77 3.58 -10.27 -0.04 -3.81 16 15 C -0.13 -4.78 7.49 31.18 0.23 -4.54 16 16 C -0.13 -4.10 8.09 31.18 0.25 -3.85 16 17 C -0.13 -4.78 7.54 31.12 0.23 -4.55 16 18 H 0.04 1.90 6.29 -2.39 -0.01 1.88 16 19 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 20 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 21 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 22 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 23 H 0.25 15.37 8.31 -92.71 -0.77 14.60 16 24 H 0.12 3.35 8.14 -2.39 -0.02 3.33 16 25 H 0.05 2.48 7.03 -2.39 -0.02 2.46 16 26 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 27 H 0.11 2.57 8.14 -2.39 -0.02 2.55 16 28 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 30 H 0.05 2.14 7.72 -2.38 -0.02 2.12 16 Total: -1.00 -67.91 246.72 5.36 -62.55 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: 1.08 Total: 11.48 kcal Atomic # 6 Polarization: -46.64 SS G_CDS: 2.57 Total: -44.07 kcal Atomic # 7 Polarization: -60.32 SS G_CDS: 0.30 Total: -60.03 kcal Atomic # 8 Polarization: -17.41 SS G_CDS: -0.61 Total: -18.02 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.09 kcal Total: -67.91 5.36 -62.55 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719690416.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.648 kcal (2) G-P(sol) polarization free energy of solvation -67.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds