Wall clock time and date at job start Mon Mar 30 2020 02:31:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 110.78600 * 2 1 4 4 C 1.54940 * 110.72475 * 236.74399 * 2 1 3 5 5 N 1.48534 * 103.22395 * 204.23156 * 4 2 1 6 6 C 1.46904 * 110.99926 * 159.72369 * 5 4 2 7 7 C 1.47901 * 105.82282 * 39.20468 * 5 4 2 8 8 C 1.53991 * 107.05874 * 334.67223 * 7 5 4 9 9 H 1.09001 * 110.30829 * 120.14103 * 8 7 5 10 10 N 1.46503 * 110.30554 * 242.30394 * 8 7 5 11 11 C 1.36938 * 119.99988 * 270.71292 * 10 8 7 12 12 H 1.07992 * 120.00078 * 0.02562 * 11 10 8 13 13 C 1.38817 * 119.99763 * 180.02562 * 11 10 8 14 14 N 1.31615 * 119.99800 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99797 * 180.02562 * 13 11 10 16 16 H 1.48493 * 109.47559 * 59.99879 * 15 13 11 17 17 H 1.48501 * 109.46990 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.46928 * 300.00010 * 15 13 11 19 19 H 1.08995 * 109.47198 * 296.76080 * 1 2 3 20 20 H 1.09001 * 109.46673 * 56.75673 * 1 2 3 21 21 H 1.09000 * 109.47038 * 176.75542 * 1 2 3 22 22 H 1.08993 * 110.66470 * 322.66165 * 4 2 1 23 23 H 1.08994 * 110.66705 * 85.63258 * 4 2 1 24 24 H 1.08995 * 109.47000 * 59.99834 * 6 5 4 25 25 H 1.08998 * 109.46851 * 179.97438 * 6 5 4 26 26 H 1.09002 * 109.46575 * 299.99803 * 6 5 4 27 27 H 1.08996 * 109.91871 * 215.31472 * 7 5 4 28 28 H 1.09007 * 109.91341 * 94.02054 * 7 5 4 29 29 H 0.97004 * 119.99503 * 90.72110 * 10 8 7 30 30 H 0.96999 * 119.99743 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9168 1.0190 0.0000 4 6 2.0783 -0.7947 -1.2118 5 7 3.4318 -1.2093 -0.7619 6 6 3.9213 -2.3500 -1.5477 7 6 3.2893 -1.5708 0.6651 8 6 2.0770 -0.7927 1.2093 9 1 1.3207 -1.4832 1.5825 10 7 2.4970 0.1252 2.2711 11 6 2.5242 -0.2998 3.5726 12 1 2.2364 -1.3118 3.8162 13 6 2.9217 0.5701 4.5787 14 7 3.2720 1.8036 4.2817 15 14 2.9595 -0.0099 6.3539 16 1 3.8950 -1.1561 6.4804 17 1 3.4155 1.1007 7.2279 18 1 1.5972 -0.4352 6.7647 19 1 -0.3633 0.4627 0.9175 20 1 -0.3633 0.5634 -0.8595 21 1 -0.3633 -1.0260 -0.0582 22 1 1.4561 -1.6665 -1.4134 23 1 2.1418 -0.1567 -2.0933 24 1 3.9730 -2.0708 -2.6000 25 1 4.9141 -2.6328 -1.1979 26 1 3.2399 -3.1924 -1.4283 27 1 4.1886 -1.2870 1.2117 28 1 3.1160 -2.6427 0.7611 29 1 2.7558 1.0341 2.0521 30 1 3.5494 2.4115 4.9847 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722255087.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:34 Heat of formation + Delta-G solvation = 12.659931 kcal Electronic energy + Delta-G solvation = -11536.267542 eV Core-core repulsion = 9559.578831 eV Total energy + Delta-G solvation = -1976.688712 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.65962 -34.25656 -32.54052 -30.55976 -27.68673 -26.43579 -24.28241 -22.58741 -20.41551 -19.49740 -16.96355 -15.66771 -14.93683 -14.37411 -14.05475 -13.38762 -13.23977 -12.74185 -12.53390 -12.00940 -11.65383 -11.48774 -11.08218 -10.94458 -10.77783 -10.49030 -10.35491 -10.14466 -9.88511 -9.60157 -8.87254 -7.99378 -6.92595 -5.73473 -3.02252 3.45594 3.49951 3.51058 4.47590 4.61552 5.12583 5.25863 5.40688 5.58375 5.64918 5.71919 5.81056 5.90969 5.95045 6.02422 6.05515 6.16704 6.32416 6.45422 6.52364 6.68165 6.83396 7.01647 7.38314 7.48397 7.72223 8.45131 9.56094 10.14822 10.50074 11.48915 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.053591 B = 0.010772 C = 0.009824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.347912 B = 2598.781895 C = 2849.351603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.104 4.104 3 H 0.083 0.917 4 C 0.040 3.960 5 N -0.522 5.522 6 C 0.018 3.982 7 C 0.012 3.988 8 C 0.175 3.825 9 H 0.054 0.946 10 N -0.715 5.715 11 C -0.242 4.242 12 H 0.069 0.931 13 C -0.012 4.012 14 N -0.931 5.931 15 Si 0.906 3.094 16 H -0.286 1.286 17 H -0.291 1.291 18 H -0.286 1.286 19 H 0.062 0.938 20 H 0.047 0.953 21 H 0.047 0.953 22 H 0.038 0.962 23 H 0.072 0.928 24 H 0.061 0.939 25 H 0.064 0.936 26 H 0.021 0.979 27 H 0.086 0.914 28 H 0.028 0.972 29 H 0.386 0.614 30 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.872 -5.848 -9.709 11.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.124 4.124 3 H 0.102 0.898 4 C -0.088 4.088 5 N -0.246 5.246 6 C -0.131 4.131 7 C -0.119 4.119 8 C 0.063 3.937 9 H 0.072 0.928 10 N -0.356 5.356 11 C -0.373 4.373 12 H 0.087 0.913 13 C -0.208 4.208 14 N -0.579 5.579 15 Si 0.737 3.263 16 H -0.213 1.213 17 H -0.217 1.217 18 H -0.213 1.213 19 H 0.081 0.919 20 H 0.066 0.934 21 H 0.066 0.934 22 H 0.056 0.944 23 H 0.091 0.909 24 H 0.079 0.921 25 H 0.083 0.917 26 H 0.040 0.960 27 H 0.105 0.895 28 H 0.046 0.954 29 H 0.220 0.780 30 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.490 -5.505 -9.586 11.331 hybrid contribution -0.309 -0.786 0.999 1.308 sum -2.800 -6.291 -8.587 11.006 Atomic orbital electron populations 1.21690 0.95010 1.00962 1.01670 1.22366 0.95113 1.00375 0.94551 0.89816 1.23238 0.89356 0.98130 0.98097 1.64705 1.23203 1.33062 1.03620 1.22478 1.00136 0.92133 0.98337 1.23962 1.02809 0.97415 0.87674 1.21097 0.92600 0.91723 0.88245 0.92797 1.42448 1.79159 1.11883 1.02061 1.19213 1.37801 0.96577 0.83735 0.91332 1.24741 1.02192 0.95950 0.97956 1.69657 1.51260 1.04980 1.32016 0.86283 0.77663 0.77326 0.84994 1.21298 1.21692 1.21326 0.91884 0.93354 0.93363 0.94404 0.90933 0.92057 0.91733 0.96046 0.89533 0.95352 0.77971 0.93460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 9.16 37.16 0.34 -1.72 16 2 C -0.10 -1.83 3.37 -88.76 -0.30 -2.12 16 3 H 0.08 1.59 7.75 -51.93 -0.40 1.19 16 4 C 0.04 0.62 6.00 -1.90 -0.01 0.61 16 5 N -0.52 -9.00 5.55 -238.72 -1.33 -10.33 16 6 C 0.02 0.25 9.41 60.07 0.57 0.82 16 7 C 0.01 0.23 6.50 -2.76 -0.02 0.22 16 8 C 0.18 3.63 3.22 -66.57 -0.21 3.42 16 9 H 0.05 1.13 7.80 -51.93 -0.40 0.73 16 10 N -0.72 -18.33 5.05 -52.11 -0.26 -18.60 16 11 C -0.24 -6.79 9.96 -15.06 -0.15 -6.94 16 12 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 13 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 14 N -0.93 -28.41 13.06 55.49 0.72 -27.69 16 15 Si 0.91 22.56 29.55 -169.99 -5.02 17.54 16 16 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 17 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 18 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 19 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 20 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 21 H 0.05 0.67 8.10 -51.93 -0.42 0.25 16 22 H 0.04 0.54 7.87 -51.93 -0.41 0.13 16 23 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 24 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.02 0.28 7.99 -51.93 -0.42 -0.14 16 27 H 0.09 1.93 7.92 -51.93 -0.41 1.51 16 28 H 0.03 0.52 7.69 -51.92 -0.40 0.12 16 29 H 0.39 10.59 7.58 -40.82 -0.31 10.28 16 30 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 247.21 15.07 3.73 3.73 Total: -1.00 -29.80 247.21 -6.88 -36.67 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -4.83 Total: 4.84 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: 0.12 Total: -6.17 kcal Atomic # 7 Polarization: -55.75 SS G_CDS: -0.86 Total: -56.61 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -29.80 -6.88 -36.67 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722255087.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.334 kcal (2) G-P(sol) polarization free energy of solvation -29.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds