Wall clock time and date at job start Mon Mar 30 2020 02:31:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 110.78600 * 2 1 4 4 C 1.54940 * 110.72475 * 236.74399 * 2 1 3 5 5 N 1.48534 * 103.22395 * 204.23156 * 4 2 1 6 6 C 1.46904 * 110.99926 * 159.72369 * 5 4 2 7 7 C 1.47901 * 105.82282 * 39.20468 * 5 4 2 8 8 C 1.53991 * 107.05874 * 334.67223 * 7 5 4 9 9 H 1.09001 * 110.30829 * 120.14103 * 8 7 5 10 10 N 1.46503 * 110.30554 * 242.30394 * 8 7 5 11 11 C 1.36938 * 119.99988 * 270.71292 * 10 8 7 12 12 H 1.07992 * 120.00078 * 0.02562 * 11 10 8 13 13 C 1.38817 * 119.99763 * 180.02562 * 11 10 8 14 14 N 1.31615 * 119.99800 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99797 * 180.02562 * 13 11 10 16 16 H 1.48493 * 109.47559 * 59.99879 * 15 13 11 17 17 H 1.48501 * 109.46990 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.46928 * 300.00010 * 15 13 11 19 19 H 1.08995 * 109.47198 * 296.76080 * 1 2 3 20 20 H 1.09001 * 109.46673 * 56.75673 * 1 2 3 21 21 H 1.09000 * 109.47038 * 176.75542 * 1 2 3 22 22 H 1.08993 * 110.66470 * 322.66165 * 4 2 1 23 23 H 1.08994 * 110.66705 * 85.63258 * 4 2 1 24 24 H 1.08995 * 109.47000 * 59.99834 * 6 5 4 25 25 H 1.08998 * 109.46851 * 179.97438 * 6 5 4 26 26 H 1.09002 * 109.46575 * 299.99803 * 6 5 4 27 27 H 1.08996 * 109.91871 * 215.31472 * 7 5 4 28 28 H 1.09007 * 109.91341 * 94.02054 * 7 5 4 29 29 H 0.97004 * 119.99503 * 90.72110 * 10 8 7 30 30 H 0.96999 * 119.99743 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9168 1.0190 0.0000 4 6 2.0783 -0.7947 -1.2118 5 7 3.4318 -1.2093 -0.7619 6 6 3.9213 -2.3500 -1.5477 7 6 3.2893 -1.5708 0.6651 8 6 2.0770 -0.7927 1.2093 9 1 1.3207 -1.4832 1.5825 10 7 2.4970 0.1252 2.2711 11 6 2.5242 -0.2998 3.5726 12 1 2.2364 -1.3118 3.8162 13 6 2.9217 0.5701 4.5787 14 7 3.2720 1.8036 4.2817 15 14 2.9595 -0.0099 6.3539 16 1 3.8950 -1.1561 6.4804 17 1 3.4155 1.1007 7.2279 18 1 1.5972 -0.4352 6.7647 19 1 -0.3633 0.4627 0.9175 20 1 -0.3633 0.5634 -0.8595 21 1 -0.3633 -1.0260 -0.0582 22 1 1.4561 -1.6665 -1.4134 23 1 2.1418 -0.1567 -2.0933 24 1 3.9730 -2.0708 -2.6000 25 1 4.9141 -2.6328 -1.1979 26 1 3.2399 -3.1924 -1.4283 27 1 4.1886 -1.2870 1.2117 28 1 3.1160 -2.6427 0.7611 29 1 2.7558 1.0341 2.0521 30 1 3.5494 2.4115 4.9847 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000722255087.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:34 Heat of formation + Delta-G solvation = -8.888562 kcal Electronic energy + Delta-G solvation = -11537.201955 eV Core-core repulsion = 9559.578831 eV Total energy + Delta-G solvation = -1977.623125 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.10634 -36.08589 -34.11576 -32.43020 -29.28715 -27.72053 -26.09070 -24.21468 -21.82637 -21.07790 -19.03794 -17.27309 -16.33744 -16.18490 -15.42444 -15.21533 -14.89864 -14.06980 -13.96327 -13.49551 -13.07111 -12.94924 -12.80305 -12.64532 -12.33911 -12.18991 -12.04964 -11.78248 -11.56077 -11.37805 -10.91517 -9.30532 -9.00845 -7.93361 -5.22388 1.46684 1.49921 1.56039 2.56355 3.18084 3.38072 3.74108 3.88084 4.01791 4.31827 4.41284 4.47647 4.58992 4.65917 4.68598 4.78716 4.89115 4.99202 5.00457 5.16821 5.30692 5.36720 5.43387 5.53994 5.99989 6.21577 6.28409 7.33736 8.10039 8.34014 9.29919 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.053591 B = 0.010772 C = 0.009824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.347912 B = 2598.781895 C = 2849.351603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.101 4.101 3 H 0.062 0.938 4 C 0.049 3.951 5 N -0.541 5.541 6 C 0.018 3.982 7 C 0.023 3.977 8 C 0.165 3.835 9 H 0.052 0.948 10 N -0.728 5.728 11 C -0.243 4.243 12 H 0.075 0.925 13 C -0.076 4.076 14 N -0.969 5.969 15 Si 0.973 3.027 16 H -0.279 1.279 17 H -0.296 1.296 18 H -0.277 1.277 19 H 0.039 0.961 20 H 0.074 0.926 21 H 0.063 0.937 22 H 0.059 0.941 23 H 0.093 0.907 24 H 0.083 0.917 25 H 0.063 0.937 26 H 0.033 0.967 27 H 0.050 0.950 28 H 0.041 0.959 29 H 0.372 0.628 30 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.599 -7.237 -10.858 13.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.121 4.121 3 H 0.081 0.919 4 C -0.079 4.079 5 N -0.265 5.265 6 C -0.131 4.131 7 C -0.108 4.108 8 C 0.056 3.944 9 H 0.070 0.930 10 N -0.367 5.367 11 C -0.375 4.375 12 H 0.092 0.908 13 C -0.268 4.268 14 N -0.620 5.620 15 Si 0.802 3.198 16 H -0.205 1.205 17 H -0.222 1.222 18 H -0.203 1.203 19 H 0.059 0.941 20 H 0.093 0.907 21 H 0.082 0.918 22 H 0.077 0.923 23 H 0.111 0.889 24 H 0.102 0.898 25 H 0.082 0.918 26 H 0.051 0.949 27 H 0.069 0.931 28 H 0.059 0.941 29 H 0.204 0.796 30 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -3.235 -6.943 -10.774 13.220 hybrid contribution -0.088 -0.394 1.256 1.319 sum -3.323 -7.337 -9.519 12.469 Atomic orbital electron populations 1.21637 0.93072 1.02222 1.01727 1.22315 0.96704 0.99021 0.94057 0.91934 1.23253 0.88460 0.98767 0.97407 1.64644 1.24568 1.34855 1.02466 1.22549 1.00178 0.91375 0.98955 1.23592 1.00247 0.97672 0.89243 1.21362 0.93123 0.91602 0.88357 0.92982 1.42615 1.79500 1.12025 1.02594 1.19603 1.36261 0.96661 0.84965 0.90751 1.25570 1.02880 0.96205 1.02136 1.69824 1.53068 1.06184 1.32888 0.85218 0.77985 0.76703 0.79895 1.20488 1.22177 1.20298 0.94136 0.90698 0.91776 0.92307 0.88920 0.89797 0.91826 0.94868 0.93121 0.94097 0.79562 0.94052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.65 9.16 71.98 0.66 -2.99 16 2 C -0.10 -3.42 3.37 -9.59 -0.03 -3.45 16 3 H 0.06 2.38 7.75 -2.39 -0.02 2.36 16 4 C 0.05 1.36 6.00 86.65 0.52 1.88 16 5 N -0.54 -17.57 5.55 -909.17 -5.05 -22.62 16 6 C 0.02 0.44 9.41 127.69 1.20 1.64 16 7 C 0.02 0.89 6.50 86.45 0.56 1.46 16 8 C 0.17 6.82 3.22 45.87 0.15 6.96 16 9 H 0.05 2.15 7.80 -2.39 -0.02 2.13 16 10 N -0.73 -38.10 5.05 -318.78 -1.61 -39.71 16 11 C -0.24 -13.79 9.96 84.03 0.84 -12.95 16 12 H 0.07 4.04 7.83 -2.91 -0.02 4.01 16 13 C -0.08 -4.43 5.50 84.86 0.47 -3.96 16 14 N -0.97 -60.58 13.06 21.65 0.28 -60.30 16 15 Si 0.97 46.81 29.55 68.60 2.03 48.83 16 16 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 17 H -0.30 -14.31 7.11 99.48 0.71 -13.61 16 18 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 19 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 20 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 21 H 0.06 1.60 8.10 -2.39 -0.02 1.58 16 22 H 0.06 1.42 7.87 -2.39 -0.02 1.40 16 23 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 24 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 25 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.03 0.75 7.99 -2.39 -0.02 0.73 16 27 H 0.05 2.29 7.92 -2.39 -0.02 2.28 16 28 H 0.04 1.44 7.69 -2.38 -0.02 1.42 16 29 H 0.37 21.17 7.58 -92.71 -0.70 20.47 16 30 H 0.25 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -64.18 247.21 0.41 -63.77 By element: Atomic # 1 Polarization: 21.03 SS G_CDS: 0.40 Total: 21.43 kcal Atomic # 6 Polarization: -15.77 SS G_CDS: 4.36 Total: -11.41 kcal Atomic # 7 Polarization: -116.25 SS G_CDS: -6.38 Total: -122.63 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 2.03 Total: 48.83 kcal Total: -64.18 0.41 -63.77 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722255087.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.882 kcal (2) G-P(sol) polarization free energy of solvation -64.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds