Wall clock time and date at job start Mon Mar 30 2020 02:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 110.36749 * 2 1 4 4 C 1.54382 * 110.32322 * 122.18217 * 2 1 3 5 5 N 1.48856 * 104.63073 * 142.75131 * 4 2 1 6 6 C 1.46894 * 111.13147 * 201.00447 * 5 4 2 7 7 C 1.48562 * 104.07618 * 320.54703 * 5 4 2 8 8 C 1.54257 * 110.32677 * 237.82064 * 2 1 3 9 9 H 1.09004 * 110.40932 * 122.16063 * 8 2 1 10 10 N 1.46497 * 110.32455 * 359.97438 * 8 2 1 11 11 C 1.36939 * 120.00216 * 157.90994 * 10 8 2 12 12 H 1.07996 * 119.99841 * 359.97438 * 11 10 8 13 13 C 1.38818 * 120.00069 * 180.02562 * 11 10 8 14 14 N 1.31618 * 119.99784 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 119.99768 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.47126 * 60.00178 * 15 13 11 17 17 H 1.48499 * 109.46977 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.47336 * 300.00024 * 15 13 11 19 19 H 1.09003 * 109.46929 * 182.17589 * 1 2 3 20 20 H 1.08999 * 109.47480 * 302.17742 * 1 2 3 21 21 H 1.08999 * 109.47109 * 62.18139 * 1 2 3 22 22 H 1.09003 * 110.41233 * 261.53190 * 4 2 1 23 23 H 1.09004 * 110.41109 * 23.85726 * 4 2 1 24 24 H 1.09007 * 109.47069 * 175.19421 * 6 5 4 25 25 H 1.08995 * 109.47381 * 295.19532 * 6 5 4 26 26 H 1.09000 * 109.47076 * 55.19936 * 6 5 4 27 27 H 1.09002 * 110.41176 * 280.62937 * 7 5 4 28 28 H 1.09002 * 110.41204 * 158.30844 * 7 5 4 29 29 H 0.97000 * 120.00318 * 337.91095 * 10 8 2 30 30 H 0.97006 * 119.99273 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9093 1.0218 0.0000 4 6 2.0662 -0.7711 1.2253 5 7 3.2719 -1.4846 0.7224 6 6 3.6108 -2.6245 1.5846 7 6 2.8807 -1.9421 -0.6358 8 6 2.0658 -0.7704 -1.2243 9 1 2.7078 -0.1276 -1.8267 10 7 0.9544 -1.2792 -2.0317 11 6 1.1506 -1.5834 -3.3524 12 1 2.1245 -1.4478 -3.7988 13 6 0.0972 -2.0650 -4.1176 14 7 -1.0899 -2.2297 -3.5736 15 14 0.3647 -2.4793 -5.9193 16 1 1.4041 -3.5335 -6.0358 17 1 -0.9067 -2.9713 -6.5081 18 1 0.8095 -1.2632 -6.6462 19 1 -0.3633 -1.0270 0.0390 20 1 -0.3634 0.5473 0.8698 21 1 -0.3633 0.4796 -0.9089 22 1 2.3393 -0.0779 2.0210 23 1 1.3221 -1.4835 1.5816 24 1 4.4424 -3.1767 1.1468 25 1 3.8956 -2.2612 2.5720 26 1 2.7458 -3.2817 1.6748 27 1 2.2649 -2.8392 -0.5721 28 1 3.7660 -2.1321 -1.2427 29 1 0.0795 -1.4005 -1.6309 30 1 -1.8259 -2.5666 -4.1083 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000722255088.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:36 Heat of formation + Delta-G solvation = -1.408040 kcal Electronic energy + Delta-G solvation = -11659.168651 eV Core-core repulsion = 9681.869906 eV Total energy + Delta-G solvation = -1977.298745 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.20741 -36.19051 -34.10058 -32.17351 -29.52642 -27.70207 -25.84402 -24.69385 -22.03636 -20.25905 -19.44721 -16.91896 -16.82436 -15.97899 -15.43146 -15.34714 -15.00955 -14.44101 -13.61479 -13.52379 -13.17945 -12.92421 -12.84918 -12.49003 -12.30102 -12.12385 -12.09529 -11.77985 -11.43994 -11.36763 -10.91136 -9.48702 -9.00676 -7.94789 -5.23001 1.46741 1.49556 1.55634 2.55597 3.13481 3.37270 3.75039 3.93448 4.04861 4.21917 4.41393 4.52089 4.59950 4.66519 4.69282 4.80393 4.87930 4.95952 4.98006 5.19361 5.24186 5.37753 5.46145 5.50174 5.86448 6.11722 6.29088 7.34648 8.11157 8.35491 9.28524 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.056169 B = 0.011303 C = 0.010180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.374534 B = 2476.605091 C = 2749.804282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.099 4.099 3 H 0.090 0.910 4 C 0.043 3.957 5 N -0.521 5.521 6 C 0.014 3.986 7 C 0.022 3.978 8 C 0.165 3.835 9 H 0.049 0.951 10 N -0.733 5.733 11 C -0.244 4.244 12 H 0.073 0.927 13 C -0.075 4.075 14 N -0.969 5.969 15 Si 0.973 3.027 16 H -0.279 1.279 17 H -0.295 1.295 18 H -0.278 1.278 19 H 0.036 0.964 20 H 0.076 0.924 21 H 0.042 0.958 22 H 0.101 0.899 23 H 0.039 0.961 24 H 0.070 0.930 25 H 0.088 0.912 26 H 0.020 0.980 27 H 0.023 0.977 28 H 0.066 0.934 29 H 0.381 0.619 30 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.464 2.432 9.404 11.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.118 4.118 3 H 0.109 0.891 4 C -0.085 4.085 5 N -0.245 5.245 6 C -0.135 4.135 7 C -0.109 4.109 8 C 0.055 3.945 9 H 0.067 0.933 10 N -0.376 5.376 11 C -0.376 4.376 12 H 0.091 0.909 13 C -0.267 4.267 14 N -0.620 5.620 15 Si 0.802 3.198 16 H -0.206 1.206 17 H -0.222 1.222 18 H -0.204 1.204 19 H 0.055 0.945 20 H 0.095 0.905 21 H 0.061 0.939 22 H 0.120 0.880 23 H 0.057 0.943 24 H 0.089 0.911 25 H 0.107 0.893 26 H 0.038 0.962 27 H 0.041 0.959 28 H 0.085 0.915 29 H 0.217 0.783 30 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 7.018 2.748 9.237 11.922 hybrid contribution -1.108 -1.146 -1.022 1.894 sum 5.910 1.602 8.215 10.246 Atomic orbital electron populations 1.21561 0.94781 1.00704 1.01533 1.22110 0.95844 0.99918 0.93974 0.89122 1.23244 0.90752 0.97362 0.97115 1.65440 1.33237 1.23559 1.02283 1.22553 1.00204 0.92388 0.98316 1.23744 0.98439 0.97957 0.90722 1.21135 0.89013 0.92803 0.91565 0.93283 1.42941 1.09393 1.77480 1.07811 1.19635 0.95626 1.34533 0.87767 0.90891 1.25539 0.95582 1.03176 1.02424 1.69809 1.01424 1.53758 1.37020 0.85225 0.76283 0.78101 0.80239 1.20564 1.22157 1.20395 0.94520 0.90487 0.93865 0.88049 0.94297 0.91123 0.89332 0.96169 0.95867 0.91525 0.78285 0.94047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.43 7.76 71.98 0.56 -3.87 16 2 C -0.10 -3.31 3.65 -9.90 -0.04 -3.35 16 3 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 4 C 0.04 1.25 6.05 86.39 0.52 1.77 16 5 N -0.52 -16.32 5.67 -906.78 -5.14 -21.46 16 6 C 0.01 0.36 9.54 127.69 1.22 1.58 16 7 C 0.02 0.86 6.20 86.45 0.54 1.39 16 8 C 0.16 6.84 3.68 45.89 0.17 7.01 16 9 H 0.05 2.10 8.11 -2.39 -0.02 2.08 16 10 N -0.73 -37.65 4.63 -318.71 -1.48 -39.13 16 11 C -0.24 -13.75 9.97 84.03 0.84 -12.91 16 12 H 0.07 3.97 7.83 -2.91 -0.02 3.95 16 13 C -0.08 -4.35 5.50 84.86 0.47 -3.89 16 14 N -0.97 -59.66 13.06 21.65 0.28 -59.37 16 15 Si 0.97 46.63 29.55 68.60 2.03 48.66 16 16 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 17 H -0.30 -14.23 7.11 99.48 0.71 -13.53 16 18 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 19 H 0.04 1.41 6.96 -2.39 -0.02 1.39 16 20 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 21 H 0.04 1.71 7.72 -2.39 -0.02 1.69 16 22 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 23 H 0.04 1.16 7.60 -2.39 -0.02 1.14 16 24 H 0.07 1.71 8.14 -2.38 -0.02 1.70 16 25 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 26 H 0.02 0.53 7.98 -2.39 -0.02 0.52 16 27 H 0.02 0.99 7.88 -2.39 -0.02 0.97 16 28 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 29 H 0.38 20.58 4.99 -92.71 -0.46 20.12 16 30 H 0.25 15.00 8.31 -92.70 -0.77 14.23 16 Total: -1.00 -62.83 242.83 0.60 -62.22 By element: Atomic # 1 Polarization: 20.71 SS G_CDS: 0.64 Total: 21.35 kcal Atomic # 6 Polarization: -16.54 SS G_CDS: 4.27 Total: -12.27 kcal Atomic # 7 Polarization: -113.63 SS G_CDS: -6.33 Total: -119.97 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.66 kcal Total: -62.83 0.60 -62.22 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722255088.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.814 kcal (2) G-P(sol) polarization free energy of solvation -62.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds