Wall clock time and date at job start Mon Mar 30 2020 02:31:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 110.27543 * 2 1 4 4 C 1.53994 * 110.30905 * 122.09053 * 2 1 3 5 5 N 1.47903 * 107.05830 * 117.78508 * 4 2 1 6 6 C 1.46897 * 110.99723 * 145.84453 * 5 4 2 7 7 C 1.48532 * 105.81651 * 25.33452 * 5 4 2 8 8 C 1.54592 * 110.30731 * 237.91124 * 2 1 3 9 9 H 1.09001 * 110.72451 * 337.38875 * 8 2 1 10 10 N 1.46500 * 110.72440 * 100.67080 * 8 2 1 11 11 C 1.36935 * 119.99852 * 205.00081 * 10 8 2 12 12 H 1.08000 * 120.00584 * 359.97438 * 11 10 8 13 13 C 1.38811 * 119.99900 * 180.02562 * 11 10 8 14 14 N 1.31613 * 119.99996 * 359.97438 * 13 11 10 15 15 Si 1.86810 * 120.00031 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46911 * 89.99632 * 15 13 11 17 17 H 1.48496 * 109.47038 * 209.99527 * 15 13 11 18 18 H 1.48493 * 109.47095 * 329.99657 * 15 13 11 19 19 H 1.09002 * 109.47030 * 300.70337 * 1 2 3 20 20 H 1.09000 * 109.47306 * 60.69727 * 1 2 3 21 21 H 1.08997 * 109.47367 * 180.70017 * 1 2 3 22 22 H 1.08995 * 109.91874 * 237.14152 * 4 2 1 23 23 H 1.09002 * 109.91369 * 358.43586 * 4 2 1 24 24 H 1.09006 * 109.47366 * 60.00373 * 6 5 4 25 25 H 1.09005 * 109.47389 * 180.02562 * 6 5 4 26 26 H 1.09002 * 109.47614 * 300.00031 * 6 5 4 27 27 H 1.08996 * 110.67351 * 79.22817 * 7 5 4 28 28 H 1.09003 * 110.66251 * 202.18986 * 7 5 4 29 29 H 0.96994 * 120.00131 * 25.00277 * 10 8 2 30 30 H 0.97003 * 120.00176 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0645 -0.7673 1.2236 5 7 2.8332 -1.9217 0.7099 6 6 3.9767 -2.2225 1.5816 7 6 3.2881 -1.5326 -0.6495 8 6 2.0665 -0.7702 -1.2283 9 1 1.3178 -1.4680 -1.6033 10 7 2.4844 0.1591 -2.2810 11 6 2.5006 -0.2493 -3.5879 12 1 2.2057 -1.2565 -3.8427 13 6 2.8970 0.6311 -4.5852 14 7 3.2569 1.8584 -4.2748 15 14 2.9198 0.0738 -6.3681 16 1 1.6007 0.3526 -6.9907 17 1 3.9796 0.8097 -7.1032 18 1 3.1971 -1.3838 -6.4276 19 1 -0.3633 0.5247 0.8836 20 1 -0.3634 0.5030 -0.8962 21 1 -0.3634 -1.0275 0.0126 22 1 2.7148 -0.1205 1.8124 23 1 1.2326 -1.1174 1.8346 24 1 3.6176 -2.4595 2.5832 25 1 4.5249 -3.0750 1.1806 26 1 4.6364 -1.3560 1.6277 27 1 4.1580 -0.8785 -0.5916 28 1 3.5117 -2.4159 -1.2478 29 1 2.7496 1.0636 -2.0522 30 1 3.5335 2.4737 -4.9717 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722255093.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:42 Heat of formation + Delta-G solvation = 10.893101 kcal Electronic energy + Delta-G solvation = -11524.159463 eV Core-core repulsion = 9547.394136 eV Total energy + Delta-G solvation = -1976.765327 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.66251 -34.29572 -32.53974 -30.57598 -27.73579 -26.35854 -24.35770 -22.56743 -20.36676 -19.56849 -17.07315 -15.57191 -15.06567 -14.24073 -13.90566 -13.33078 -13.15366 -12.99473 -12.52735 -12.27168 -11.80284 -11.14625 -11.04444 -11.01617 -10.76955 -10.52841 -10.38386 -10.12620 -9.82975 -9.66409 -8.88311 -8.06030 -6.96429 -5.77058 -3.06077 3.44076 3.49365 3.50997 4.42237 4.64119 5.12387 5.26641 5.37709 5.57789 5.63822 5.69940 5.87104 5.93075 6.01951 6.03041 6.06179 6.25154 6.34033 6.44214 6.61978 6.65129 6.77990 6.93984 7.32370 7.44069 7.72473 8.41730 9.52553 10.10005 10.44465 11.45553 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.054591 B = 0.010609 C = 0.009721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.784420 B = 2638.512923 C = 2879.696575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.114 4.114 3 H 0.073 0.927 4 C 0.043 3.957 5 N -0.526 5.526 6 C 0.018 3.982 7 C 0.012 3.988 8 C 0.184 3.816 9 H 0.065 0.935 10 N -0.717 5.717 11 C -0.240 4.240 12 H 0.072 0.928 13 C -0.014 4.014 14 N -0.934 5.934 15 Si 0.907 3.093 16 H -0.290 1.290 17 H -0.292 1.292 18 H -0.281 1.281 19 H 0.044 0.956 20 H 0.059 0.941 21 H 0.053 0.947 22 H 0.036 0.964 23 H 0.072 0.928 24 H 0.060 0.940 25 H 0.064 0.936 26 H 0.023 0.977 27 H 0.042 0.958 28 H 0.072 0.928 29 H 0.384 0.616 30 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.806 -4.828 9.748 11.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.134 4.134 3 H 0.092 0.908 4 C -0.085 4.085 5 N -0.250 5.250 6 C -0.131 4.131 7 C -0.119 4.119 8 C 0.072 3.928 9 H 0.083 0.917 10 N -0.357 5.357 11 C -0.371 4.371 12 H 0.090 0.910 13 C -0.209 4.209 14 N -0.582 5.582 15 Si 0.738 3.262 16 H -0.217 1.217 17 H -0.218 1.218 18 H -0.207 1.207 19 H 0.064 0.936 20 H 0.078 0.922 21 H 0.072 0.928 22 H 0.054 0.946 23 H 0.090 0.910 24 H 0.079 0.921 25 H 0.083 0.917 26 H 0.042 0.958 27 H 0.061 0.939 28 H 0.091 0.909 29 H 0.218 0.782 30 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.129 -5.375 9.550 11.164 hybrid contribution 0.834 0.782 -0.814 1.404 sum -1.295 -4.593 8.736 9.955 Atomic orbital electron populations 1.21727 0.94757 1.01390 1.01199 1.22292 0.96288 0.99572 0.95266 0.90838 1.22894 0.97543 0.91204 0.96884 1.64691 1.20755 1.36261 1.03300 1.22474 0.93043 1.00249 0.97335 1.24148 0.99701 0.99624 0.88387 1.21185 0.92900 0.91249 0.87481 0.91691 1.42420 1.79074 1.11984 1.02237 1.19287 1.37430 0.96968 0.83411 0.91024 1.24753 1.02153 0.95969 0.98069 1.69662 1.51364 1.05071 1.32094 0.86185 0.77222 0.77669 0.85109 1.21696 1.21816 1.20696 0.93646 0.92170 0.92770 0.94558 0.90955 0.92098 0.91723 0.95817 0.93913 0.90905 0.78240 0.93515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.07 8.88 37.16 0.33 -1.74 16 2 C -0.11 -2.00 3.32 -89.26 -0.30 -2.29 16 3 H 0.07 1.35 7.75 -51.93 -0.40 0.95 16 4 C 0.04 0.67 6.36 -2.75 -0.02 0.65 16 5 N -0.53 -8.75 5.55 -238.54 -1.32 -10.07 16 6 C 0.02 0.25 9.40 60.06 0.56 0.82 16 7 C 0.01 0.23 6.25 -1.76 -0.01 0.22 16 8 C 0.18 3.82 3.28 -65.93 -0.22 3.60 16 9 H 0.07 1.40 7.82 -51.93 -0.41 1.00 16 10 N -0.72 -18.23 5.23 -51.49 -0.27 -18.50 16 11 C -0.24 -6.70 9.96 -15.06 -0.15 -6.85 16 12 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 13 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 14 N -0.93 -28.30 13.06 55.49 0.72 -27.57 16 15 Si 0.91 22.50 29.55 -169.99 -5.02 17.48 16 16 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 17 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 19 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 20 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 21 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 22 H 0.04 0.54 7.73 -51.93 -0.40 0.13 16 23 H 0.07 1.02 7.68 -51.93 -0.40 0.62 16 24 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 26 H 0.02 0.33 8.00 -51.93 -0.42 -0.09 16 27 H 0.04 0.88 7.96 -51.93 -0.41 0.46 16 28 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 29 H 0.38 10.34 7.58 -40.82 -0.31 10.03 16 30 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 247.19 15.07 3.73 3.73 Total: -1.00 -29.48 247.19 -6.89 -36.37 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -4.83 Total: 4.66 kcal Atomic # 6 Polarization: -6.19 SS G_CDS: 0.11 Total: -6.08 kcal Atomic # 7 Polarization: -55.27 SS G_CDS: -0.87 Total: -56.14 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -29.48 -6.89 -36.37 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722255093.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.261 kcal (2) G-P(sol) polarization free energy of solvation -29.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds